Wall clock time and date at job start Fri Apr 10 2020 17:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38115 * 120.40019 * 2 1 4 4 C 1.39631 * 118.33276 * 180.02562 * 3 2 1 5 5 N 1.38547 * 120.52791 * 179.97438 * 4 3 2 6 6 C 1.46849 * 110.99392 * 179.97438 * 5 4 3 7 7 C 1.53045 * 109.51842 * 174.16016 * 6 5 4 8 8 C 1.53124 * 109.27445 * 59.18168 * 7 6 5 9 9 C 1.50701 * 109.51734 * 182.44047 * 8 7 6 10 10 O 1.21293 * 120.00153 * 119.68269 * 9 8 7 11 11 N 1.34781 * 119.99986 * 299.67990 * 9 8 7 12 12 C 1.46500 * 119.99955 * 0.02562 * 11 9 8 13 13 C 1.37099 * 119.99775 * 180.02562 * 11 9 8 14 14 H 1.07997 * 119.99982 * 321.49748 * 13 11 9 15 15 C 1.38950 * 119.99557 * 141.49807 * 13 11 9 16 16 N 1.31418 * 119.99831 * 157.27176 * 15 13 11 17 17 Si 1.86802 * 120.00418 * 337.26519 * 15 13 11 18 18 H 1.48501 * 109.46759 * 95.10354 * 17 15 13 19 19 H 1.48500 * 109.47532 * 215.10451 * 17 15 13 20 20 H 1.48500 * 109.46784 * 335.10810 * 17 15 13 21 21 C 1.53114 * 109.16221 * 302.34071 * 8 7 6 22 22 C 1.46845 * 110.99834 * 55.79473 * 5 4 3 23 23 N 1.32991 * 118.93674 * 0.25535 * 4 3 2 24 24 C 1.31743 * 120.68394 * 359.48472 * 23 4 3 25 25 N 1.31787 * 121.83962 * 0.53338 * 24 23 4 26 26 H 1.09001 * 109.47136 * 90.00111 * 1 2 3 27 27 H 1.09004 * 109.46548 * 209.99778 * 1 2 3 28 28 H 1.09000 * 109.47180 * 329.99394 * 1 2 3 29 29 H 1.08001 * 120.83349 * 0.04815 * 3 2 1 30 30 H 1.08993 * 109.46561 * 294.17314 * 6 5 4 31 31 H 1.08992 * 109.46169 * 54.14625 * 6 5 4 32 32 H 1.08999 * 109.49987 * 179.11874 * 7 6 5 33 33 H 1.08998 * 109.50228 * 299.23925 * 7 6 5 34 34 H 1.08993 * 109.52423 * 62.25513 * 8 7 6 35 35 H 1.08996 * 109.46822 * 88.38618 * 12 11 9 36 36 H 1.08997 * 109.47105 * 208.38437 * 12 11 9 37 37 H 1.09000 * 109.47255 * 328.38719 * 12 11 9 38 38 H 0.97000 * 119.99823 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.50329 * 297.71863 * 21 8 7 40 40 H 1.08996 * 109.50544 * 177.59892 * 21 8 7 41 41 H 1.09000 * 109.46178 * 305.84578 * 22 5 4 42 42 H 1.08999 * 109.46699 * 65.81954 * 22 5 4 43 43 H 1.08010 * 119.07966 * 180.26325 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 5.7861 2.0128 -0.0010 7 6 6.5756 3.3156 -0.1484 8 6 6.2276 4.2516 1.0124 9 6 6.9563 5.5595 0.8405 10 8 6.3305 6.5930 0.7335 11 7 8.3035 5.5807 0.8057 12 6 9.0594 4.3324 0.9344 13 6 8.9665 6.7706 0.6498 14 1 8.5733 7.5246 -0.0159 15 6 10.1443 7.0063 1.3483 16 7 11.0050 7.8946 0.9043 17 14 10.5042 6.0607 2.9186 18 1 11.3470 4.8795 2.6029 19 1 11.2241 6.9417 3.8731 20 1 9.2275 5.6092 3.5281 21 6 4.7175 4.5044 1.0188 22 6 3.9823 3.1669 1.1326 23 7 4.2024 -0.0454 -0.0062 24 6 3.4956 -1.1572 -0.0011 25 7 2.1778 -1.1433 -0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6862 2.1380 0.0008 30 1 6.0573 1.5280 0.9367 31 1 6.0208 1.3498 -0.8336 32 1 7.6435 3.0977 -0.1326 33 1 6.3151 3.7941 -1.0925 34 1 6.5237 3.7897 1.9542 35 1 9.1976 3.8881 -0.0513 36 1 10.0326 4.5411 1.3785 37 1 8.5103 3.6392 1.5716 38 1 11.8274 8.0588 1.3918 39 1 4.4278 5.0016 0.0931 40 1 4.4577 5.1358 1.8684 41 1 2.9065 3.3423 1.1235 42 1 4.2622 2.6764 2.0649 43 1 4.0105 -2.1067 -0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177557712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:46 Heat of formation + Delta-G solvation = 38.295646 kcal Electronic energy + Delta-G solvation = -25089.088826 eV Core-core repulsion = 21556.234189 eV Total energy + Delta-G solvation = -3532.854637 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.47154 -39.70750 -38.09686 -34.96955 -34.66269 -33.75409 -32.08905 -31.04443 -30.96194 -28.65785 -26.55122 -26.14032 -24.72128 -23.94793 -22.75421 -21.93153 -20.22651 -18.72816 -17.86279 -17.37372 -17.08251 -16.16386 -15.74060 -15.60250 -15.53225 -15.18966 -14.75959 -14.51257 -14.15613 -13.78587 -13.52544 -13.36460 -13.20324 -13.11123 -12.69836 -12.63440 -12.49159 -12.08788 -11.96263 -11.85297 -11.34813 -11.14623 -11.04670 -10.88461 -10.74924 -10.49223 -10.42480 -10.21151 -9.96493 -9.94900 -9.44970 -9.05875 -8.62448 -8.44893 -7.73519 -6.41615 -3.98507 0.77037 0.89717 3.01040 3.16052 3.20002 3.24478 3.59448 3.70131 3.85895 4.00674 4.12889 4.36344 4.49772 4.73599 4.82448 4.84904 4.95969 5.04355 5.07419 5.16797 5.19304 5.28206 5.32918 5.35745 5.42118 5.57713 5.59849 5.61101 5.73030 5.82694 5.85789 5.96834 6.00635 6.11208 6.15764 6.29654 6.38802 6.49405 6.52724 6.87641 7.00483 7.53499 7.97001 8.28345 8.49855 8.95705 9.30543 9.76499 10.70594 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.033360 B = 0.003155 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.116155 B = 8873.775165 C = 9281.776169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.186 3.814 3 C -0.247 4.247 4 C 0.365 3.635 5 N -0.471 5.471 6 C 0.070 3.930 7 C -0.124 4.124 8 C -0.108 4.108 9 C 0.470 3.530 10 O -0.564 6.564 11 N -0.470 5.470 12 C 0.062 3.938 13 C -0.317 4.317 14 H 0.104 0.896 15 C 0.060 3.940 16 N -0.863 5.863 17 Si 0.878 3.122 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.265 1.265 21 C -0.093 4.093 22 C 0.063 3.937 23 N -0.562 5.562 24 C 0.323 3.677 25 N -0.549 5.549 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.146 0.854 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.274 0.726 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.422 -17.930 0.497 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.043 3.957 3 C -0.272 4.272 4 C 0.125 3.875 5 N -0.188 5.188 6 C -0.057 4.057 7 C -0.162 4.162 8 C -0.130 4.130 9 C 0.259 3.741 10 O -0.446 6.446 11 N -0.191 5.191 12 C -0.081 4.081 13 C -0.444 4.444 14 H 0.122 0.878 15 C -0.146 4.146 16 N -0.499 5.499 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.132 4.132 22 C -0.062 4.062 23 N -0.284 5.284 24 C 0.034 3.966 25 N -0.267 5.267 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.164 0.836 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -15.132 -17.773 0.038 23.342 hybrid contribution 0.362 -0.090 1.365 1.416 sum -14.769 -17.863 1.404 23.220 Atomic orbital electron populations 1.20768 0.87955 1.03923 1.03637 1.21512 0.97421 0.87857 0.88893 1.22195 0.93918 1.00858 1.10250 1.20210 0.90499 0.88875 0.87959 1.58813 1.07482 1.11243 1.41228 1.22081 0.83437 0.97483 1.02651 1.21960 1.00932 0.94141 0.99138 1.21356 0.96125 0.95981 0.99540 1.20148 0.82825 0.89546 0.81626 1.90551 1.66213 1.34734 1.53066 1.43650 1.04073 1.06249 1.65169 1.22140 0.97345 0.87968 1.00653 1.19028 1.05271 0.94231 1.25907 0.87833 1.25379 0.95511 0.96332 0.97373 1.69775 1.08354 1.34176 1.37605 0.86953 0.78771 0.79289 0.84469 1.20224 1.21405 1.18984 1.21395 0.92911 0.94271 1.04581 1.22379 1.01113 0.93610 0.89141 1.68418 1.41806 0.98511 1.19628 1.24747 0.86630 0.96237 0.89028 1.68276 1.10239 1.30132 1.18091 0.89720 0.90008 0.90174 0.83590 0.92894 0.89293 0.89183 0.90464 0.89922 0.92655 0.91873 0.92591 0.91605 0.89853 0.90017 0.89613 0.93342 0.78906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.21 36.01 0.37 -0.29 16 2 C 0.19 1.83 6.82 -82.33 -0.56 1.27 16 3 C -0.25 -2.55 8.95 -39.11 -0.35 -2.90 16 4 C 0.36 4.43 6.41 -154.77 -0.99 3.44 16 5 N -0.47 -5.89 4.68 -173.05 -0.81 -6.70 16 6 C 0.07 0.88 4.67 -3.83 -0.02 0.86 16 7 C -0.12 -1.77 5.01 -26.64 -0.13 -1.90 16 8 C -0.11 -1.77 1.78 -91.65 -0.16 -1.94 16 9 C 0.47 10.63 7.03 -10.98 -0.08 10.55 16 10 O -0.56 -14.95 15.86 5.55 0.09 -14.86 16 11 N -0.47 -11.19 2.55 -122.19 -0.31 -11.51 16 12 C 0.06 1.19 7.57 59.85 0.45 1.65 16 13 C -0.32 -8.97 9.33 -14.93 -0.14 -9.11 16 14 H 0.10 3.30 7.93 -52.49 -0.42 2.89 16 15 C 0.06 1.65 5.28 -17.46 -0.09 1.56 16 16 N -0.86 -24.94 13.96 55.50 0.77 -24.17 16 17 Si 0.88 20.45 25.14 -169.99 -4.27 16.18 16 18 H -0.28 -5.93 6.66 56.52 0.38 -5.56 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 20 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 21 C -0.09 -1.36 4.68 -26.65 -0.12 -1.48 16 22 C 0.06 0.73 5.25 -3.83 -0.02 0.71 16 23 N -0.56 -6.86 8.85 -13.81 -0.12 -6.98 16 24 C 0.32 3.43 12.28 -92.20 -1.13 2.29 16 25 N -0.55 -6.04 10.37 -10.88 -0.11 -6.16 16 26 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 29 H 0.15 1.24 7.22 -52.49 -0.38 0.86 16 30 H 0.05 0.66 8.13 -51.93 -0.42 0.23 16 31 H 0.09 1.12 7.72 -51.93 -0.40 0.72 16 32 H 0.09 1.24 4.62 -51.93 -0.24 1.00 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.08 1.26 7.40 -51.93 -0.38 0.87 16 35 H 0.06 0.93 6.90 -51.93 -0.36 0.58 16 36 H 0.06 1.29 3.50 -51.93 -0.18 1.11 16 37 H 0.06 0.89 6.11 -51.93 -0.32 0.57 16 38 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.08 1.33 8.04 -51.93 -0.42 0.92 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.09 0.83 6.74 -51.93 -0.35 0.48 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.19 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 337.03 15.07 5.08 5.08 Total: -1.00 -33.49 337.03 -8.66 -42.14 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -5.98 Total: 2.27 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.98 Total: 4.71 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.58 Total: -55.52 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: 0.09 Total: -14.86 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.27 Total: 16.18 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.49 -8.66 -42.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177557712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.437 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds