Wall clock time and date at job start Fri Apr 10 2020 17:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38115 * 120.40019 * 2 1 4 4 C 1.39631 * 118.33276 * 180.02562 * 3 2 1 5 5 N 1.38547 * 120.52791 * 179.97438 * 4 3 2 6 6 C 1.46849 * 110.99392 * 179.97438 * 5 4 3 7 7 C 1.53045 * 109.51842 * 174.16016 * 6 5 4 8 8 C 1.53124 * 109.27445 * 59.18168 * 7 6 5 9 9 C 1.50701 * 109.51734 * 182.44047 * 8 7 6 10 10 O 1.21293 * 120.00153 * 119.68269 * 9 8 7 11 11 N 1.34781 * 119.99986 * 299.67990 * 9 8 7 12 12 C 1.46500 * 119.99955 * 0.02562 * 11 9 8 13 13 C 1.37099 * 119.99775 * 180.02562 * 11 9 8 14 14 H 1.07997 * 119.99982 * 321.49748 * 13 11 9 15 15 C 1.38950 * 119.99557 * 141.49807 * 13 11 9 16 16 N 1.31418 * 119.99831 * 157.27176 * 15 13 11 17 17 Si 1.86802 * 120.00418 * 337.26519 * 15 13 11 18 18 H 1.48501 * 109.46759 * 95.10354 * 17 15 13 19 19 H 1.48500 * 109.47532 * 215.10451 * 17 15 13 20 20 H 1.48500 * 109.46784 * 335.10810 * 17 15 13 21 21 C 1.53114 * 109.16221 * 302.34071 * 8 7 6 22 22 C 1.46845 * 110.99834 * 55.79473 * 5 4 3 23 23 N 1.32991 * 118.93674 * 0.25535 * 4 3 2 24 24 C 1.31743 * 120.68394 * 359.48472 * 23 4 3 25 25 N 1.31787 * 121.83962 * 0.53338 * 24 23 4 26 26 H 1.09001 * 109.47136 * 90.00111 * 1 2 3 27 27 H 1.09004 * 109.46548 * 209.99778 * 1 2 3 28 28 H 1.09000 * 109.47180 * 329.99394 * 1 2 3 29 29 H 1.08001 * 120.83349 * 0.04815 * 3 2 1 30 30 H 1.08993 * 109.46561 * 294.17314 * 6 5 4 31 31 H 1.08992 * 109.46169 * 54.14625 * 6 5 4 32 32 H 1.08999 * 109.49987 * 179.11874 * 7 6 5 33 33 H 1.08998 * 109.50228 * 299.23925 * 7 6 5 34 34 H 1.08993 * 109.52423 * 62.25513 * 8 7 6 35 35 H 1.08996 * 109.46822 * 88.38618 * 12 11 9 36 36 H 1.08997 * 109.47105 * 208.38437 * 12 11 9 37 37 H 1.09000 * 109.47255 * 328.38719 * 12 11 9 38 38 H 0.97000 * 119.99823 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.50329 * 297.71863 * 21 8 7 40 40 H 1.08996 * 109.50544 * 177.59892 * 21 8 7 41 41 H 1.09000 * 109.46178 * 305.84578 * 22 5 4 42 42 H 1.08999 * 109.46699 * 65.81954 * 22 5 4 43 43 H 1.08010 * 119.07966 * 180.26325 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2059 1.1913 0.0000 4 6 3.6013 1.1409 -0.0005 5 7 4.3477 2.3081 -0.0011 6 6 5.7861 2.0128 -0.0010 7 6 6.5756 3.3156 -0.1484 8 6 6.2276 4.2516 1.0124 9 6 6.9563 5.5595 0.8405 10 8 6.3305 6.5930 0.7335 11 7 8.3035 5.5807 0.8057 12 6 9.0594 4.3324 0.9344 13 6 8.9665 6.7706 0.6498 14 1 8.5733 7.5246 -0.0159 15 6 10.1443 7.0063 1.3483 16 7 11.0050 7.8946 0.9043 17 14 10.5042 6.0607 2.9186 18 1 11.3470 4.8795 2.6029 19 1 11.2241 6.9417 3.8731 20 1 9.2275 5.6092 3.5281 21 6 4.7175 4.5044 1.0188 22 6 3.9823 3.1669 1.1326 23 7 4.2024 -0.0454 -0.0062 24 6 3.4956 -1.1572 -0.0011 25 7 2.1778 -1.1433 -0.0006 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3632 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.6862 2.1380 0.0008 30 1 6.0573 1.5280 0.9367 31 1 6.0208 1.3498 -0.8336 32 1 7.6435 3.0977 -0.1326 33 1 6.3151 3.7941 -1.0925 34 1 6.5237 3.7897 1.9542 35 1 9.1976 3.8881 -0.0513 36 1 10.0326 4.5411 1.3785 37 1 8.5103 3.6392 1.5716 38 1 11.8274 8.0588 1.3918 39 1 4.4278 5.0016 0.0931 40 1 4.4577 5.1358 1.8684 41 1 2.9065 3.3423 1.1235 42 1 4.2622 2.6764 2.0649 43 1 4.0105 -2.1067 -0.0016 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177557712.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:45 Heat of formation + Delta-G solvation = 15.892716 kcal Electronic energy + Delta-G solvation = -25090.060290 eV Core-core repulsion = 21556.234189 eV Total energy + Delta-G solvation = -3533.826101 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.30116 -41.11460 -39.39016 -36.80366 -35.71834 -34.70905 -34.02076 -32.03445 -31.99872 -29.36466 -28.21987 -27.61255 -25.90193 -25.14126 -23.74209 -22.88403 -21.44963 -20.28825 -19.11946 -18.73273 -18.17819 -17.83897 -17.39664 -16.55077 -16.39903 -16.16623 -15.87045 -15.70611 -15.62392 -14.99267 -14.84227 -14.69651 -14.29197 -14.16866 -13.99481 -13.74334 -13.67552 -13.45449 -13.18109 -13.10885 -12.72377 -12.56595 -12.36683 -12.11897 -11.94797 -11.87205 -11.76455 -11.58145 -11.37286 -11.01240 -10.72019 -10.28641 -10.24650 -9.69150 -9.47399 -8.53449 -6.16144 0.01701 0.11338 1.18800 1.31664 1.44178 1.93558 2.16695 2.29934 2.69205 2.82324 2.93681 3.21441 3.26170 3.58507 3.71534 3.78428 3.90302 4.08495 4.14561 4.20460 4.25021 4.30732 4.35470 4.43198 4.51626 4.58995 4.61585 4.65471 4.76816 4.79916 4.81599 4.84351 4.87257 4.98887 5.11346 5.20690 5.31444 5.42691 5.52466 5.54653 5.99780 6.02980 6.20777 6.55428 6.93386 7.20053 7.29291 7.86920 8.64112 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.033360 B = 0.003155 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.116155 B = 8873.775165 C = 9281.776169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.181 3.819 3 C -0.250 4.250 4 C 0.349 3.651 5 N -0.482 5.482 6 C 0.081 3.919 7 C -0.115 4.115 8 C -0.097 4.097 9 C 0.463 3.537 10 O -0.616 6.616 11 N -0.482 5.482 12 C 0.056 3.944 13 C -0.338 4.338 14 H 0.040 0.960 15 C 0.011 3.989 16 N -0.910 5.910 17 Si 0.952 3.048 18 H -0.237 1.237 19 H -0.290 1.290 20 H -0.259 1.259 21 C -0.089 4.089 22 C 0.073 3.927 23 N -0.579 5.579 24 C 0.316 3.684 25 N -0.563 5.563 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.163 0.837 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.280 0.720 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.060 0.940 43 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.397 -21.540 2.204 27.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.038 3.962 3 C -0.275 4.275 4 C 0.109 3.891 5 N -0.199 5.199 6 C -0.045 4.045 7 C -0.153 4.153 8 C -0.119 4.119 9 C 0.253 3.747 10 O -0.500 6.500 11 N -0.204 5.204 12 C -0.086 4.086 13 C -0.466 4.466 14 H 0.058 0.942 15 C -0.191 4.191 16 N -0.548 5.548 17 Si 0.775 3.225 18 H -0.162 1.162 19 H -0.217 1.217 20 H -0.183 1.183 21 C -0.127 4.127 22 C -0.052 4.052 23 N -0.300 5.300 24 C 0.027 3.973 25 N -0.281 5.281 26 H 0.113 0.887 27 H 0.103 0.897 28 H 0.117 0.883 29 H 0.180 0.820 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -16.104 -21.426 1.727 26.859 hybrid contribution 0.580 1.088 0.715 1.426 sum -15.524 -20.337 2.442 25.701 Atomic orbital electron populations 1.20872 0.85585 1.05015 1.04563 1.22076 0.99006 0.87409 0.87695 1.22405 0.93332 1.01861 1.09931 1.20325 0.91181 0.88702 0.88876 1.58806 1.07405 1.11877 1.41843 1.21933 0.83490 0.95941 1.03183 1.21882 1.01888 0.94408 0.97132 1.21348 0.96393 0.92596 1.01520 1.21283 0.82537 0.91343 0.79515 1.90516 1.67305 1.37397 1.54825 1.43789 1.04850 1.06377 1.65402 1.22397 0.96846 0.86394 1.02948 1.18627 1.06252 0.95575 1.26155 0.94168 1.26204 0.94661 0.97750 1.00490 1.69891 1.09195 1.36458 1.39232 0.85783 0.79287 0.78889 0.78514 1.16164 1.21695 1.18271 1.21318 0.92033 0.96092 1.03295 1.22297 1.01901 0.91575 0.89425 1.68407 1.42375 0.98880 1.20362 1.25289 0.86807 0.96819 0.88353 1.68361 1.10523 1.30784 1.18472 0.88705 0.89735 0.88287 0.81950 0.91875 0.89223 0.88249 0.92460 0.87368 0.90464 0.92776 0.88446 0.91010 0.92104 0.90464 0.87451 0.92156 0.76450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 10.21 71.24 0.73 -0.27 16 2 C 0.18 3.09 6.82 42.42 0.29 3.38 16 3 C -0.25 -4.50 8.95 22.58 0.20 -4.30 16 4 C 0.35 7.60 6.41 133.16 0.85 8.45 16 5 N -0.48 -10.92 4.68 -701.40 -3.28 -14.20 16 6 C 0.08 1.82 4.67 86.33 0.40 2.22 16 7 C -0.12 -3.08 5.01 30.65 0.15 -2.92 16 8 C -0.10 -3.03 1.78 -11.46 -0.02 -3.05 16 9 C 0.46 21.19 7.03 87.66 0.62 21.80 16 10 O -0.62 -34.23 15.86 -3.07 -0.05 -34.28 16 11 N -0.48 -23.12 2.55 -658.89 -1.68 -24.80 16 12 C 0.06 1.99 7.57 127.77 0.97 2.96 16 13 C -0.34 -20.03 9.33 84.04 0.78 -19.25 16 14 H 0.04 2.81 7.93 -2.91 -0.02 2.79 16 15 C 0.01 0.63 5.28 84.93 0.45 1.08 16 16 N -0.91 -54.44 13.96 21.66 0.30 -54.14 16 17 Si 0.95 41.53 25.14 68.60 1.72 43.25 16 18 H -0.24 -8.89 6.66 99.48 0.66 -8.23 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 21 C -0.09 -2.49 4.68 30.65 0.14 -2.35 16 22 C 0.07 1.49 5.25 86.33 0.45 1.95 16 23 N -0.58 -12.69 8.85 -197.60 -1.75 -14.44 16 24 C 0.32 5.96 12.28 180.90 2.22 8.18 16 25 N -0.56 -11.07 10.37 -188.33 -1.95 -13.03 16 26 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 0.58 8.09 -2.39 -0.02 0.56 16 29 H 0.16 2.25 7.22 -2.91 -0.02 2.23 16 30 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 31 H 0.09 2.04 7.72 -2.39 -0.02 2.02 16 32 H 0.10 2.45 4.62 -2.39 -0.01 2.43 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 2.87 7.40 -2.39 -0.02 2.86 16 35 H 0.08 2.40 6.90 -2.39 -0.02 2.39 16 36 H 0.05 2.03 3.50 -2.39 -0.01 2.03 16 37 H 0.10 2.64 6.11 -2.39 -0.01 2.63 16 38 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 39 H 0.06 1.97 8.04 -2.39 -0.02 1.95 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.11 1.74 6.74 -2.39 -0.02 1.73 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.22 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -78.12 337.03 2.53 -75.59 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.98 Total: 18.15 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 8.24 Total: 17.90 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -8.36 Total: -120.61 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -0.05 Total: -34.28 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 1.72 Total: 43.25 kcal Total: -78.12 2.53 -75.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177557712.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.483 kcal (2) G-P(sol) polarization free energy of solvation -78.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds