Wall clock time and date at job start Fri Apr 10 2020 17:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34779 * 119.99892 * 2 1 4 4 O 1.21276 * 120.00001 * 185.53120 * 3 2 1 5 5 C 1.50709 * 120.00047 * 5.53491 * 3 2 1 6 6 H 1.08999 * 109.57654 * 325.93614 * 5 3 2 7 7 C 1.53254 * 109.58238 * 205.66130 * 5 3 2 8 8 C 1.53161 * 109.49403 * 190.00791 * 7 5 3 9 9 C 1.53399 * 109.37696 * 69.25600 * 8 7 5 10 10 C 1.51046 * 108.20482 * 311.21478 * 9 8 7 11 11 N 1.30092 * 127.38715 * 196.04102 * 10 9 8 12 12 C 1.34292 * 109.21029 * 179.90699 * 11 10 9 13 13 C 1.34853 * 108.06916 * 0.02562 * 12 11 10 14 14 N 1.35421 * 123.98251 * 15.98763 * 10 9 8 15 15 C 1.46494 * 120.00188 * 180.02562 * 2 1 3 16 16 C 1.53948 * 113.73995 * 31.83859 * 15 2 1 17 17 N 1.47577 * 86.11702 * 222.04669 * 16 15 2 18 18 C 1.36937 * 134.49532 * 204.64371 * 17 16 15 19 19 H 1.07999 * 120.00200 * 180.02562 * 18 17 16 20 20 C 1.38810 * 119.99594 * 359.97438 * 18 17 16 21 21 N 1.31617 * 120.00533 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 119.99845 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46771 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47066 * 120.00057 * 22 20 18 25 25 H 1.48495 * 109.46983 * 240.00507 * 22 20 18 26 26 C 1.47583 * 91.01691 * 24.64247 * 17 16 15 27 27 H 1.08993 * 109.46969 * 214.74773 * 1 2 3 28 28 H 1.09007 * 109.47149 * 334.74629 * 1 2 3 29 29 H 1.09003 * 109.47278 * 94.74624 * 1 2 3 30 30 H 1.09000 * 109.46997 * 309.86523 * 7 5 3 31 31 H 1.09006 * 109.46660 * 69.84369 * 7 5 3 32 32 H 1.08998 * 109.39047 * 309.31607 * 8 7 5 33 33 H 1.09000 * 109.52869 * 189.28518 * 8 7 5 34 34 H 1.09003 * 109.71683 * 191.53614 * 9 8 7 35 35 H 1.09001 * 109.75143 * 70.91474 * 9 8 7 36 36 H 1.07990 * 125.96425 * 180.02562 * 12 11 10 37 37 H 1.08000 * 126.65459 * 180.02562 * 13 12 11 38 38 H 1.08995 * 113.01822 * 163.50249 * 15 2 1 39 39 H 1.08992 * 113.77128 * 336.35345 * 16 15 2 40 40 H 1.09006 * 113.76505 * 107.74596 * 16 15 2 41 41 H 0.96996 * 120.00615 * 179.97438 * 21 20 18 42 42 H 1.09000 * 113.77352 * 221.06134 * 26 17 16 43 43 H 1.08995 * 113.76822 * 89.65787 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3474 1.1697 -0.1012 5 6 1.3906 2.4694 0.1259 6 1 0.4261 2.3863 -0.3751 7 6 2.2078 3.5956 -0.5163 8 6 1.5741 4.9469 -0.1726 9 6 1.7660 5.2336 1.3221 10 6 1.3457 4.0063 2.0957 11 7 1.0808 3.9262 3.3669 12 6 0.7420 2.6623 3.6688 13 6 0.8008 1.9317 2.5369 14 7 1.1830 2.7813 1.5419 15 6 2.1975 -1.2687 -0.0006 16 6 1.4706 -2.4037 -0.7445 17 7 1.8916 -3.2704 0.3733 18 6 2.1063 -4.6152 0.5169 19 1 2.4205 -5.0131 1.4704 20 6 1.9189 -5.4670 -0.5630 21 7 1.5355 -4.9821 -1.7250 22 14 2.2111 -7.3017 -0.3671 23 1 2.6325 -7.5896 1.0275 24 1 0.9564 -8.0374 -0.6665 25 1 3.2760 -7.7363 -1.3062 26 6 1.9885 -2.1056 1.2745 27 1 -0.3633 -0.8444 0.5857 28 1 -0.3634 0.9295 0.4385 29 1 -0.3634 -0.0850 -1.0242 30 1 3.2282 3.5676 -0.1340 31 1 2.2217 3.4629 -1.5982 32 1 0.5093 4.9165 -0.4037 33 1 2.0513 5.7326 -0.7583 34 1 1.1490 6.0828 1.6158 35 1 2.8144 5.4540 1.5232 36 1 0.4700 2.2951 4.6473 37 1 0.5862 0.8779 2.4378 38 1 3.2436 -1.1567 -0.2854 39 1 0.3916 -2.2651 -0.8107 40 1 1.9266 -2.6656 -1.6993 41 1 1.4049 -5.5773 -2.4797 42 1 2.8578 -2.1296 1.9317 43 1 1.0615 -1.8796 1.8014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042922665.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:36 Heat of formation + Delta-G solvation = 93.870270 kcal Electronic energy + Delta-G solvation = -25619.081058 eV Core-core repulsion = 22088.636318 eV Total energy + Delta-G solvation = -3530.444741 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.56479 -40.05198 -38.01337 -36.37783 -34.85350 -33.36092 -32.02933 -30.05390 -28.81416 -27.88266 -26.90299 -25.37165 -24.91884 -23.16350 -22.41155 -21.59685 -20.15535 -19.12653 -18.68361 -17.60654 -17.41990 -16.90613 -16.18468 -15.25649 -15.10296 -14.84949 -14.78097 -14.53845 -14.22277 -13.91158 -13.89608 -13.82452 -13.08430 -12.80156 -12.63315 -12.50813 -12.14065 -11.98414 -11.70041 -11.58754 -11.43039 -11.42134 -11.29981 -10.97248 -10.81269 -10.42420 -10.28666 -10.10769 -9.95913 -9.67406 -9.42893 -8.91262 -8.43075 -8.36282 -7.02252 -5.88349 -3.21609 1.87316 2.07554 2.92529 3.04394 3.10336 3.33581 3.39324 3.41547 3.97886 4.19932 4.20863 4.36649 4.38869 4.55554 4.78733 4.96664 5.01820 5.04434 5.08638 5.27953 5.37889 5.39511 5.40844 5.45991 5.51205 5.54626 5.56047 5.68718 5.75678 5.87965 5.91798 5.99247 6.19175 6.29254 6.44040 6.55194 6.69408 7.03318 7.05277 7.15804 7.38303 7.47798 7.85678 8.02127 8.06803 8.93105 9.59039 10.43968 11.28867 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.030318 B = 0.003381 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.332003 B = 8279.075333 C = 8758.554797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.591 5.591 3 C 0.506 3.494 4 O -0.523 6.523 5 C 0.116 3.884 6 H 0.109 0.891 7 C -0.123 4.123 8 C -0.123 4.123 9 C -0.034 4.034 10 C 0.210 3.790 11 N -0.488 5.488 12 C -0.030 4.030 13 C -0.048 4.048 14 N -0.443 5.443 15 C 0.089 3.911 16 C 0.158 3.842 17 N -0.604 5.604 18 C -0.224 4.224 19 H 0.083 0.917 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.915 3.085 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.109 3.891 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.171 0.829 37 H 0.175 0.825 38 H 0.116 0.884 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.255 0.745 42 H 0.048 0.952 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.231 19.556 1.956 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.324 5.324 3 C 0.290 3.710 4 O -0.398 6.398 5 C 0.010 3.990 6 H 0.127 0.873 7 C -0.161 4.161 8 C -0.161 4.161 9 C -0.073 4.073 10 C -0.052 4.052 11 N -0.207 5.207 12 C -0.177 4.177 13 C -0.181 4.181 14 N -0.128 5.128 15 C -0.015 4.015 16 C 0.032 3.968 17 N -0.330 5.330 18 C -0.352 4.352 19 H 0.101 0.899 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C -0.018 4.018 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.188 0.812 37 H 0.192 0.808 38 H 0.134 0.866 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -3.509 19.752 2.208 20.182 hybrid contribution -0.263 -2.060 -0.425 2.120 sum -3.772 17.692 1.782 18.177 Atomic orbital electron populations 1.21971 0.79707 1.02902 1.02916 1.48118 1.07023 1.06181 1.71049 1.20322 0.88042 0.84849 0.77780 1.90715 1.13761 1.86773 1.48556 1.21739 1.01337 0.95295 0.80661 0.87308 1.21836 1.00575 0.91894 1.01746 1.21693 1.01830 0.97091 0.95499 1.20213 1.02761 0.91966 0.92331 1.23328 1.04740 0.87473 0.89664 1.70063 1.18563 1.20923 1.11173 1.22326 1.07379 0.89523 0.98493 1.22703 1.09204 0.97725 0.88439 1.45164 1.50841 1.09371 1.07451 1.24177 0.98101 0.79495 0.99677 1.22625 0.95908 0.83694 0.94572 1.45640 1.78403 1.01781 1.07216 1.19048 1.39458 0.79911 0.96763 0.89897 1.24808 1.01399 0.98356 0.95667 1.69808 1.52097 1.33883 1.00917 0.86004 0.77454 0.84552 0.77493 1.20346 1.21643 1.21558 1.22964 0.98302 0.86975 0.93536 0.89806 0.91686 0.91641 0.89005 0.88859 0.91062 0.89466 0.88661 0.89158 0.81195 0.80793 0.86645 0.94904 0.90356 0.93528 0.93371 0.94748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 7.69 59.85 0.46 1.25 16 2 N -0.59 -8.78 3.04 -175.74 -0.53 -9.32 16 3 C 0.51 7.51 6.45 -10.98 -0.07 7.44 16 4 O -0.52 -9.70 15.43 5.56 0.09 -9.61 16 5 C 0.12 1.29 2.51 -68.96 -0.17 1.11 16 6 H 0.11 0.96 6.53 -51.93 -0.34 0.62 16 7 C -0.12 -1.13 4.99 -26.52 -0.13 -1.26 16 8 C -0.12 -0.83 5.95 -26.44 -0.16 -0.99 16 9 C -0.03 -0.29 6.34 -27.51 -0.17 -0.46 16 10 C 0.21 2.62 7.65 -155.24 -1.19 1.43 16 11 N -0.49 -7.00 11.24 -10.62 -0.12 -7.12 16 12 C -0.03 -0.39 11.87 -17.68 -0.21 -0.60 16 13 C -0.05 -0.61 9.92 -16.76 -0.17 -0.78 16 14 N -0.44 -5.44 2.97 -107.92 -0.32 -5.77 16 15 C 0.09 1.67 4.37 -70.15 -0.31 1.37 16 16 C 0.16 3.52 6.91 -2.98 -0.02 3.50 16 17 N -0.60 -15.03 3.70 -178.09 -0.66 -15.68 16 18 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 19 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 21 N -0.92 -26.51 11.38 55.49 0.63 -25.88 16 22 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.11 2.19 8.50 -2.97 -0.03 2.17 16 27 H 0.08 1.04 6.62 -51.93 -0.34 0.70 16 28 H 0.06 0.61 4.95 -51.92 -0.26 0.35 16 29 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 30 H 0.09 1.04 7.48 -51.93 -0.39 0.65 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.17 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.17 2.07 6.94 -52.49 -0.36 1.71 16 38 H 0.12 2.41 7.29 -51.93 -0.38 2.04 16 39 H 0.03 0.71 6.56 -51.93 -0.34 0.37 16 40 H 0.08 1.98 7.16 -51.93 -0.37 1.61 16 41 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.64 7.25 -51.93 -0.38 0.26 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -33.68 339.94 -9.32 -43.00 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -6.09 Total: 0.96 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -2.42 Total: 7.59 kcal Atomic # 7 Polarization: -62.77 SS G_CDS: -1.00 Total: -63.77 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.09 Total: -9.61 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.68 -9.32 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042922665.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.872 kcal (2) G-P(sol) polarization free energy of solvation -33.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds