Wall clock time and date at job start Fri Apr 10 2020 17:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99839 * 2 1 4 4 O 1.21280 * 119.99863 * 185.49595 * 3 2 1 5 5 C 1.50696 * 119.99800 * 5.49088 * 3 2 1 6 6 H 1.08999 * 109.46952 * 38.99706 * 5 3 2 7 7 C 1.53154 * 109.46604 * 158.97553 * 5 3 2 8 8 C 1.53387 * 109.24730 * 189.47822 * 7 5 3 9 9 C 1.51041 * 108.21120 * 311.17337 * 8 7 5 10 10 N 1.30095 * 127.38743 * 196.02427 * 9 8 7 11 11 C 1.34296 * 109.20597 * 179.89722 * 10 9 8 12 12 C 1.34848 * 108.07425 * 0.02562 * 11 10 9 13 13 N 1.35422 * 123.98330 * 15.96544 * 9 8 7 14 14 C 1.46479 * 124.82307 * 0.12515 * 13 9 8 15 15 C 1.46500 * 120.00411 * 179.97438 * 2 1 3 16 16 C 1.53940 * 113.74097 * 306.07632 * 15 2 1 17 17 N 1.47579 * 86.24377 * 137.89464 * 16 15 2 18 18 C 1.36937 * 134.49733 * 155.42265 * 17 16 15 19 19 H 1.08004 * 119.99832 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00337 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00088 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00264 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46877 * 60.00414 * 22 20 18 24 24 H 1.48502 * 109.47419 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47177 * 300.00222 * 22 20 18 26 26 C 1.47816 * 90.92061 * 335.45880 * 17 16 15 27 27 H 1.08998 * 109.46625 * 204.43559 * 1 2 3 28 28 H 1.08997 * 109.46908 * 324.43205 * 1 2 3 29 29 H 1.08995 * 109.47032 * 84.43980 * 1 2 3 30 30 H 1.09002 * 109.50740 * 309.41740 * 7 5 3 31 31 H 1.09004 * 109.50936 * 69.55664 * 7 5 3 32 32 H 1.09000 * 109.73433 * 191.48493 * 8 7 5 33 33 H 1.08999 * 109.68925 * 70.84608 * 8 7 5 34 34 H 1.08001 * 125.95697 * 180.02562 * 11 10 9 35 35 H 1.08005 * 126.65713 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.58109 * 257.30767 * 14 13 9 37 37 H 1.09000 * 109.69643 * 136.96475 * 14 13 9 38 38 H 1.08998 * 113.01721 * 174.40950 * 15 2 1 39 39 H 1.09006 * 113.77172 * 252.24776 * 16 15 2 40 40 H 1.09003 * 113.77350 * 23.53519 * 16 15 2 41 41 H 0.96996 * 120.00501 * 179.97438 * 21 20 18 42 42 H 1.08996 * 113.66619 * 270.23189 * 26 17 16 43 43 H 1.08998 * 113.93613 * 138.88878 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3475 1.1697 -0.1006 5 6 1.3905 2.4693 0.1249 6 1 0.5736 2.3519 0.8369 7 6 2.3445 3.5610 0.6184 8 6 1.5372 4.8170 0.9698 9 6 0.6069 5.1176 -0.1815 10 7 -0.0276 6.2291 -0.4148 11 6 -0.7517 6.0970 -1.5381 12 6 -0.5564 4.8519 -2.0177 13 7 0.3024 4.2321 -1.1597 14 6 0.8231 2.8655 -1.2426 15 6 2.1976 -1.2687 0.0006 16 6 1.7889 -2.2198 1.1399 17 7 1.8479 -3.2961 0.1319 18 6 2.0439 -4.6504 0.1842 19 1 2.1998 -5.1371 1.1357 20 6 2.0410 -5.3978 -0.9854 21 7 1.8505 -4.8048 -2.1450 22 14 2.3090 -7.2451 -0.9141 23 1 1.2441 -7.8682 -0.0876 24 1 2.2614 -7.8057 -2.2884 25 1 3.6351 -7.5299 -0.3096 26 6 1.6113 -2.3232 -0.9555 27 1 -0.3632 -0.9356 0.4251 28 1 -0.3633 0.8359 0.5977 29 1 -0.3633 0.0996 -1.0228 30 1 2.8739 3.2088 1.5037 31 1 3.0633 3.7982 -0.1661 32 1 2.2134 5.6576 1.1253 33 1 0.9567 4.6390 1.8750 34 1 -1.3807 6.8556 -1.9801 35 1 -0.9951 4.4281 -2.9091 36 1 1.6126 2.8203 -1.9928 37 1 0.0194 2.1821 -1.5166 38 1 3.2754 -1.1385 -0.0972 39 1 2.5389 -2.3122 1.9255 40 1 0.7871 -2.0357 1.5279 41 1 1.8488 -5.3270 -2.9624 42 1 0.5566 -2.1708 -1.1844 43 1 2.2185 -2.4967 -1.8440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043133322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:12 Heat of formation + Delta-G solvation = 90.628521 kcal Electronic energy + Delta-G solvation = -25059.941098 eV Core-core repulsion = 21529.355785 eV Total energy + Delta-G solvation = -3530.585313 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52386 -40.23658 -38.03490 -36.21533 -34.66312 -33.43902 -32.09754 -30.32941 -28.70672 -27.75669 -26.84618 -25.02244 -24.92101 -23.79090 -22.39186 -21.55033 -20.09052 -19.12748 -18.58949 -17.39252 -17.31024 -16.86560 -16.13569 -15.73541 -15.48708 -14.88236 -14.55714 -14.41901 -14.20555 -13.97921 -13.87740 -13.83703 -13.27920 -12.88995 -12.64847 -12.31880 -12.20587 -12.04171 -11.84076 -11.63991 -11.44893 -11.39622 -11.24179 -10.95209 -10.78618 -10.39374 -10.17205 -10.14348 -9.77962 -9.68608 -9.62693 -8.89066 -8.51843 -8.32569 -7.01250 -5.87188 -3.20608 1.87103 2.33753 2.69199 2.97682 3.05323 3.34575 3.38759 3.39760 4.04042 4.18164 4.20654 4.26306 4.39444 4.69955 4.72846 4.87751 4.97827 5.05028 5.08601 5.14415 5.25109 5.27788 5.31983 5.40234 5.44955 5.58194 5.62425 5.66970 5.73270 5.88640 5.95409 6.02416 6.12380 6.30525 6.44986 6.59128 6.60759 6.95410 7.08041 7.19446 7.40455 7.55974 7.86226 7.93904 8.19466 8.93474 9.59892 10.45477 11.29897 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.034939 B = 0.002883 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.212121 B = 9710.763941 C =10105.187828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.595 5.595 3 C 0.519 3.481 4 O -0.533 6.533 5 C -0.122 4.122 6 H 0.105 0.895 7 C -0.106 4.106 8 C -0.033 4.033 9 C 0.207 3.793 10 N -0.491 5.491 11 C -0.034 4.034 12 C -0.053 4.053 13 N -0.453 5.453 14 C 0.115 3.885 15 C 0.088 3.912 16 C 0.108 3.892 17 N -0.605 5.605 18 C -0.226 4.226 19 H 0.082 0.918 20 C -0.005 4.005 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.157 3.843 27 H 0.085 0.915 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.169 0.831 35 H 0.175 0.825 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.256 0.744 42 H 0.031 0.969 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.362 18.198 2.908 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.327 5.327 3 C 0.305 3.695 4 O -0.410 6.410 5 C -0.144 4.144 6 H 0.123 0.877 7 C -0.145 4.145 8 C -0.072 4.072 9 C -0.055 4.055 10 N -0.210 5.210 11 C -0.181 4.181 12 C -0.186 4.186 13 N -0.136 5.136 14 C -0.008 4.008 15 C -0.015 4.015 16 C -0.019 4.019 17 N -0.332 5.332 18 C -0.353 4.353 19 H 0.100 0.900 20 C -0.202 4.202 21 N -0.567 5.567 22 Si 0.745 3.255 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.031 3.969 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.186 0.814 35 H 0.192 0.808 36 H 0.111 0.889 37 H 0.117 0.883 38 H 0.136 0.864 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.602 18.378 3.153 19.206 hybrid contribution -0.398 -1.874 -0.734 2.052 sum -5.000 16.504 2.418 17.414 Atomic orbital electron populations 1.21890 0.79934 1.03652 1.01677 1.48079 1.06897 1.06273 1.71498 1.20089 0.87814 0.84602 0.77035 1.90715 1.13973 1.87025 1.49281 1.21679 1.00276 0.94808 0.97640 0.87655 1.21542 0.97053 0.92356 1.03500 1.20241 0.95327 0.98737 0.92931 1.23373 1.01980 0.85947 0.94225 1.70068 1.11352 1.22743 1.16860 1.22353 1.04113 0.96308 0.95368 1.22597 1.00701 0.95788 0.99509 1.45350 1.35181 1.12283 1.20788 1.21850 1.00349 0.80658 0.97941 1.24115 0.98071 0.79496 0.99822 1.22971 0.97952 0.87506 0.93454 1.45675 1.83233 1.02348 1.01908 1.18939 1.42715 0.80168 0.93485 0.90040 1.24809 1.01864 0.98361 0.95193 1.69798 1.55221 1.34638 0.97040 0.86157 0.78160 0.84475 0.76703 1.21097 1.21477 1.20936 1.22656 0.97358 0.83280 0.93620 0.89650 0.91718 0.92419 0.89154 0.90101 0.88286 0.89125 0.81351 0.80776 0.88903 0.88319 0.86405 0.93422 0.94659 0.93439 0.95148 0.90516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.19 59.85 0.49 1.27 16 2 N -0.60 -8.44 3.10 -175.44 -0.54 -8.99 16 3 C 0.52 7.09 6.79 -10.99 -0.07 7.01 16 4 O -0.53 -9.30 15.67 5.56 0.09 -9.21 16 5 C -0.12 -1.19 1.79 -91.56 -0.16 -1.35 16 6 H 0.11 0.88 6.43 -51.93 -0.33 0.54 16 7 C -0.11 -0.99 4.61 -26.45 -0.12 -1.11 16 8 C -0.03 -0.29 6.33 -27.52 -0.17 -0.46 16 9 C 0.21 2.35 7.65 -155.24 -1.19 1.16 16 10 N -0.49 -6.36 11.24 -10.62 -0.12 -6.48 16 11 C -0.03 -0.36 11.87 -17.68 -0.21 -0.57 16 12 C -0.05 -0.51 11.64 -16.76 -0.20 -0.70 16 13 N -0.45 -4.66 3.13 -113.75 -0.36 -5.01 16 14 C 0.11 1.05 6.14 -3.92 -0.02 1.03 16 15 C 0.09 1.63 4.44 -69.80 -0.31 1.32 16 16 C 0.11 2.11 8.41 -2.98 -0.03 2.08 16 17 N -0.61 -14.95 3.71 -177.07 -0.66 -15.60 16 18 C -0.23 -6.16 10.70 -15.06 -0.16 -6.33 16 19 H 0.08 2.14 7.83 -52.48 -0.41 1.73 16 20 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 21 N -0.92 -26.56 11.40 55.49 0.63 -25.93 16 22 Si 0.92 21.65 29.55 -169.99 -5.02 16.62 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.16 3.49 6.97 -2.84 -0.02 3.47 16 27 H 0.08 1.05 6.11 -51.93 -0.32 0.73 16 28 H 0.06 0.52 6.11 -51.93 -0.32 0.20 16 29 H 0.06 0.57 7.55 -51.93 -0.39 0.18 16 30 H 0.09 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.08 0.85 8.12 -51.93 -0.42 0.43 16 32 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.18 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.10 0.77 6.83 -51.93 -0.35 0.41 16 38 H 0.12 2.40 7.19 -51.93 -0.37 2.03 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.64 6.65 -51.93 -0.35 0.29 16 41 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.03 0.66 6.94 -51.93 -0.36 0.30 16 43 H 0.08 1.95 7.18 -51.93 -0.37 1.57 16 LS Contribution 342.17 15.07 5.16 5.16 Total: -1.00 -33.67 342.17 -9.19 -42.85 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.09 Total: 0.03 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: -2.27 Total: 6.57 kcal Atomic # 7 Polarization: -60.97 SS G_CDS: -1.04 Total: -62.02 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.67 -9.19 -42.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043133322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.481 kcal (2) G-P(sol) polarization free energy of solvation -33.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds