Wall clock time and date at job start Fri Apr 10 2020 17:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99839 * 2 1 4 4 O 1.21280 * 119.99863 * 185.49595 * 3 2 1 5 5 C 1.50696 * 119.99800 * 5.49088 * 3 2 1 6 6 H 1.08999 * 109.46952 * 38.99706 * 5 3 2 7 7 C 1.53154 * 109.46604 * 158.97553 * 5 3 2 8 8 C 1.53387 * 109.24730 * 189.47822 * 7 5 3 9 9 C 1.51041 * 108.21120 * 311.17337 * 8 7 5 10 10 N 1.30095 * 127.38743 * 196.02427 * 9 8 7 11 11 C 1.34296 * 109.20597 * 179.89722 * 10 9 8 12 12 C 1.34848 * 108.07425 * 0.02562 * 11 10 9 13 13 N 1.35422 * 123.98330 * 15.96544 * 9 8 7 14 14 C 1.46479 * 124.82307 * 0.12515 * 13 9 8 15 15 C 1.46500 * 120.00411 * 179.97438 * 2 1 3 16 16 C 1.53940 * 113.74097 * 306.07632 * 15 2 1 17 17 N 1.47579 * 86.24377 * 137.89464 * 16 15 2 18 18 C 1.36937 * 134.49733 * 155.42265 * 17 16 15 19 19 H 1.08004 * 119.99832 * 0.02562 * 18 17 16 20 20 C 1.38808 * 120.00337 * 179.97438 * 18 17 16 21 21 N 1.31626 * 120.00088 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00264 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46877 * 60.00414 * 22 20 18 24 24 H 1.48502 * 109.47419 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47177 * 300.00222 * 22 20 18 26 26 C 1.47816 * 90.92061 * 335.45880 * 17 16 15 27 27 H 1.08998 * 109.46625 * 204.43559 * 1 2 3 28 28 H 1.08997 * 109.46908 * 324.43205 * 1 2 3 29 29 H 1.08995 * 109.47032 * 84.43980 * 1 2 3 30 30 H 1.09002 * 109.50740 * 309.41740 * 7 5 3 31 31 H 1.09004 * 109.50936 * 69.55664 * 7 5 3 32 32 H 1.09000 * 109.73433 * 191.48493 * 8 7 5 33 33 H 1.08999 * 109.68925 * 70.84608 * 8 7 5 34 34 H 1.08001 * 125.95697 * 180.02562 * 11 10 9 35 35 H 1.08005 * 126.65713 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.58109 * 257.30767 * 14 13 9 37 37 H 1.09000 * 109.69643 * 136.96475 * 14 13 9 38 38 H 1.08998 * 113.01721 * 174.40950 * 15 2 1 39 39 H 1.09006 * 113.77172 * 252.24776 * 16 15 2 40 40 H 1.09003 * 113.77350 * 23.53519 * 16 15 2 41 41 H 0.96996 * 120.00501 * 179.97438 * 21 20 18 42 42 H 1.08996 * 113.66619 * 270.23189 * 26 17 16 43 43 H 1.08998 * 113.93613 * 138.88878 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3475 1.1697 -0.1006 5 6 1.3905 2.4693 0.1249 6 1 0.5736 2.3519 0.8369 7 6 2.3445 3.5610 0.6184 8 6 1.5372 4.8170 0.9698 9 6 0.6069 5.1176 -0.1815 10 7 -0.0276 6.2291 -0.4148 11 6 -0.7517 6.0970 -1.5381 12 6 -0.5564 4.8519 -2.0177 13 7 0.3024 4.2321 -1.1597 14 6 0.8231 2.8655 -1.2426 15 6 2.1976 -1.2687 0.0006 16 6 1.7889 -2.2198 1.1399 17 7 1.8479 -3.2961 0.1319 18 6 2.0439 -4.6504 0.1842 19 1 2.1998 -5.1371 1.1357 20 6 2.0410 -5.3978 -0.9854 21 7 1.8505 -4.8048 -2.1450 22 14 2.3090 -7.2451 -0.9141 23 1 1.2441 -7.8682 -0.0876 24 1 2.2614 -7.8057 -2.2884 25 1 3.6351 -7.5299 -0.3096 26 6 1.6113 -2.3232 -0.9555 27 1 -0.3632 -0.9356 0.4251 28 1 -0.3633 0.8359 0.5977 29 1 -0.3633 0.0996 -1.0228 30 1 2.8739 3.2088 1.5037 31 1 3.0633 3.7982 -0.1661 32 1 2.2134 5.6576 1.1253 33 1 0.9567 4.6390 1.8750 34 1 -1.3807 6.8556 -1.9801 35 1 -0.9951 4.4281 -2.9091 36 1 1.6126 2.8203 -1.9928 37 1 0.0194 2.1821 -1.5166 38 1 3.2754 -1.1385 -0.0972 39 1 2.5389 -2.3122 1.9255 40 1 0.7871 -2.0357 1.5279 41 1 1.8488 -5.3270 -2.9624 42 1 0.5566 -2.1708 -1.1844 43 1 2.2185 -2.4967 -1.8440 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043133322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:12 Heat of formation + Delta-G solvation = 69.410890 kcal Electronic energy + Delta-G solvation = -25060.861164 eV Core-core repulsion = 21529.355785 eV Total energy + Delta-G solvation = -3531.505379 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.29562 -41.43168 -39.51938 -37.13776 -35.99007 -34.21418 -34.00850 -31.24889 -29.63913 -29.30579 -27.94229 -26.63704 -25.99988 -25.04217 -23.58972 -22.32127 -21.36606 -20.18067 -19.72289 -18.88063 -18.34481 -18.09589 -17.34697 -16.93405 -16.59722 -16.39355 -15.76300 -15.43540 -15.32304 -14.97734 -14.80298 -14.73956 -14.51312 -14.02458 -13.85041 -13.58549 -13.29364 -13.21714 -13.15522 -12.91701 -12.82698 -12.71879 -12.57814 -12.25314 -12.05678 -11.99929 -11.96934 -11.54990 -10.97309 -10.88071 -10.84968 -10.56936 -9.60196 -9.26434 -8.97159 -7.94348 -5.28264 1.12113 1.36450 1.45343 1.48544 1.54567 1.74688 1.98743 2.19083 2.47392 3.21537 3.28015 3.32019 3.41308 3.45269 3.54408 3.80227 3.95145 3.97783 4.16853 4.25226 4.29685 4.30908 4.36404 4.45536 4.52545 4.60171 4.68560 4.71272 4.75757 4.85431 4.92773 4.95309 5.01526 5.15035 5.17817 5.20886 5.36862 5.45721 5.66181 5.86897 5.87904 6.20572 6.39476 6.87479 7.07107 7.16361 7.56284 8.49252 9.22377 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.034939 B = 0.002883 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.212121 B = 9710.763941 C =10105.187828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.595 5.595 3 C 0.522 3.478 4 O -0.575 6.575 5 C -0.108 4.108 6 H 0.131 0.869 7 C -0.101 4.101 8 C -0.026 4.026 9 C 0.192 3.808 10 N -0.526 5.526 11 C -0.056 4.056 12 C -0.048 4.048 13 N -0.455 5.455 14 C 0.117 3.883 15 C 0.115 3.885 16 C 0.115 3.885 17 N -0.638 5.638 18 C -0.236 4.236 19 H 0.086 0.914 20 C -0.064 4.064 21 N -0.952 5.952 22 Si 0.980 3.020 23 H -0.275 1.275 24 H -0.294 1.294 25 H -0.278 1.278 26 C 0.160 3.840 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.185 0.815 35 H 0.204 0.796 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.250 0.750 42 H 0.038 0.962 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.848 18.892 3.950 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.326 5.326 3 C 0.310 3.690 4 O -0.454 6.454 5 C -0.130 4.130 6 H 0.149 0.851 7 C -0.140 4.140 8 C -0.065 4.065 9 C -0.070 4.070 10 N -0.246 5.246 11 C -0.203 4.203 12 C -0.181 4.181 13 N -0.138 5.138 14 C -0.005 4.005 15 C 0.010 3.990 16 C -0.011 4.011 17 N -0.365 5.365 18 C -0.364 4.364 19 H 0.104 0.896 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.808 3.192 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.204 1.204 26 C 0.034 3.966 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.203 0.797 35 H 0.221 0.779 36 H 0.102 0.898 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.120 19.112 4.227 20.508 hybrid contribution 0.063 -1.993 -1.051 2.254 sum -6.056 17.119 3.176 18.434 Atomic orbital electron populations 1.22151 0.77383 1.04717 1.03350 1.48001 1.08277 1.04838 1.71468 1.20687 0.87403 0.85406 0.75524 1.90708 1.16125 1.87639 1.50943 1.21599 1.00448 0.92160 0.98756 0.85086 1.21483 0.96804 0.92614 1.03060 1.20279 0.95090 0.98336 0.92799 1.23790 1.02243 0.85936 0.95037 1.70037 1.12533 1.23836 1.18171 1.22775 1.04652 0.97536 0.95308 1.23086 0.99805 0.95383 0.99837 1.45425 1.35192 1.12412 1.20749 1.21865 1.00821 0.80661 0.97186 1.23290 0.96942 0.81065 0.97669 1.23089 0.99354 0.85634 0.92985 1.45999 1.83615 1.02499 1.04367 1.19335 1.41566 0.81832 0.93693 0.89622 1.25634 1.02544 1.02601 0.94980 1.69985 1.56915 1.35797 0.97349 0.85134 0.78301 0.79476 0.76307 1.20055 1.22055 1.20384 1.22529 0.97122 0.84466 0.92494 0.90749 0.87900 0.91054 0.88893 0.91744 0.87749 0.87323 0.79747 0.77930 0.89792 0.86236 0.88733 0.93006 0.91902 0.94162 0.94404 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 8.19 127.77 1.05 2.25 16 2 N -0.59 -15.73 3.10 -827.35 -2.56 -18.29 16 3 C 0.52 13.37 6.79 87.65 0.60 13.97 16 4 O -0.58 -19.91 15.67 -3.03 -0.05 -19.95 16 5 C -0.11 -1.81 1.79 -11.40 -0.02 -1.83 16 6 H 0.13 1.57 6.43 -2.39 -0.02 1.55 16 7 C -0.10 -1.71 4.61 30.78 0.14 -1.56 16 8 C -0.03 -0.40 6.33 30.09 0.19 -0.21 16 9 C 0.19 3.98 7.65 138.23 1.06 5.03 16 10 N -0.53 -12.89 11.24 -187.51 -2.11 -15.00 16 11 C -0.06 -1.11 11.87 83.54 0.99 -0.12 16 12 C -0.05 -0.80 11.64 83.22 0.97 0.17 16 13 N -0.45 -8.20 3.13 -513.80 -1.61 -9.81 16 14 C 0.12 1.83 6.14 86.47 0.53 2.36 16 15 C 0.12 4.23 4.44 46.62 0.21 4.43 16 16 C 0.12 4.36 8.41 86.48 0.73 5.08 16 17 N -0.64 -31.63 3.71 -714.13 -2.65 -34.27 16 18 C -0.24 -12.96 10.70 84.03 0.90 -12.06 16 19 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 20 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 21 N -0.95 -56.30 11.40 21.65 0.25 -56.05 16 22 Si 0.98 44.85 29.55 68.60 2.03 46.88 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 26 C 0.16 7.23 6.97 86.43 0.60 7.83 16 27 H 0.07 1.59 6.11 -2.39 -0.01 1.57 16 28 H 0.10 1.13 6.11 -2.39 -0.01 1.12 16 29 H 0.07 1.15 7.55 -2.39 -0.02 1.14 16 30 H 0.09 1.54 8.11 -2.39 -0.02 1.52 16 31 H 0.06 1.31 8.12 -2.38 -0.02 1.29 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.19 2.75 8.06 -2.91 -0.02 2.73 16 35 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 36 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 37 H 0.12 1.39 6.83 -2.39 -0.02 1.37 16 38 H 0.09 3.95 7.19 -2.39 -0.02 3.93 16 39 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.06 2.08 6.65 -2.39 -0.02 2.07 16 41 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.04 1.64 6.94 -2.39 -0.02 1.63 16 43 H 0.04 1.91 7.18 -2.39 -0.02 1.89 16 Total: -1.00 -74.91 342.17 2.72 -72.19 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 1.02 Total: 12.09 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 8.41 Total: 22.21 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -8.68 Total: -133.41 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.05 Total: -19.95 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -74.91 2.72 -72.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043133322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.600 kcal (2) G-P(sol) polarization free energy of solvation -74.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds