Wall clock time and date at job start Fri Apr 10 2020 17:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00135 * 2 1 4 4 O 1.21680 * 120.00341 * 180.26565 * 3 2 1 5 5 C 1.46762 * 119.99857 * 0.27102 * 3 2 1 6 6 C 1.36833 * 126.91196 * 348.34780 * 5 3 2 7 7 N 1.33452 * 107.83846 * 179.97438 * 6 5 3 8 8 C 1.30560 * 109.68325 * 359.97438 * 7 6 5 9 9 N 1.34875 * 108.98617 * 0.04981 * 8 7 6 10 10 C 1.46444 * 124.98984 * 179.97438 * 9 8 7 11 11 C 1.53261 * 108.81879 * 342.95331 * 10 9 8 12 12 C 1.53158 * 109.43925 * 50.23020 * 11 10 9 13 13 C 1.51117 * 127.09268 * 180.10428 * 8 7 6 14 14 C 1.46501 * 120.00167 * 180.02562 * 2 1 3 15 15 C 1.53948 * 113.74332 * 38.74241 * 14 2 1 16 16 N 1.47805 * 86.03355 * 222.08491 * 15 14 2 17 17 C 1.36950 * 134.45370 * 204.64070 * 16 15 14 18 18 H 1.07997 * 119.99424 * 179.86879 * 17 16 15 19 19 C 1.38809 * 119.99797 * 359.87066 * 17 16 15 20 20 N 1.31618 * 119.99874 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47365 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47042 * 119.99898 * 21 19 17 24 24 H 1.48500 * 109.46911 * 239.99756 * 21 19 17 25 25 C 1.47573 * 91.05586 * 24.54707 * 16 15 14 26 26 H 1.09003 * 109.46905 * 83.33831 * 1 2 3 27 27 H 1.08996 * 109.46919 * 203.33039 * 1 2 3 28 28 H 1.08996 * 109.47302 * 323.33448 * 1 2 3 29 29 H 1.08003 * 126.08516 * 0.02562 * 6 5 3 30 30 H 1.08993 * 109.58054 * 102.76289 * 10 9 8 31 31 H 1.09002 * 109.57456 * 223.15980 * 10 9 8 32 32 H 1.09008 * 109.47378 * 170.21822 * 11 10 9 33 33 H 1.08998 * 109.48181 * 290.23520 * 11 10 9 34 34 H 1.08997 * 109.51662 * 50.58400 * 12 11 10 35 35 H 1.09002 * 109.51023 * 170.73065 * 12 11 10 36 36 H 1.08993 * 109.71235 * 44.23499 * 13 8 7 37 37 H 1.09004 * 109.73960 * 283.63204 * 13 8 7 38 38 H 1.09006 * 112.94512 * 170.33246 * 14 2 1 39 39 H 1.09001 * 113.76557 * 336.34695 * 15 14 2 40 40 H 1.08995 * 113.77139 * 107.74679 * 15 14 2 41 41 H 0.97006 * 119.99696 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.77243 * 221.15073 * 25 16 15 43 43 H 1.09010 * 113.77099 * 89.75487 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3557 1.1673 -0.0049 5 6 1.4051 2.4382 0.0060 6 6 0.0653 2.6147 -0.2091 7 7 -0.1951 3.9202 -0.1163 8 6 0.9062 4.5708 0.1453 9 7 1.9257 3.6919 0.2294 10 6 3.3188 4.0459 0.5097 11 6 3.5054 5.5478 0.2679 12 6 2.4126 6.3232 1.0098 13 6 1.0610 6.0623 0.3327 14 6 2.1975 -1.2687 -0.0006 15 6 1.5556 -2.3547 -0.8829 16 7 1.8611 -3.2879 0.2218 17 6 2.0640 -4.6396 0.3070 18 1 2.2810 -5.0938 1.2625 19 6 1.9907 -5.4258 -0.8347 20 7 1.7258 -4.8721 -1.9990 21 14 2.2667 -7.2696 -0.7182 22 1 2.5452 -7.6404 0.6925 23 1 1.0515 -7.9826 -1.1873 24 1 3.4235 -7.6515 -1.5675 25 6 1.8621 -2.1786 1.1950 26 1 -0.3633 0.1192 -1.0208 27 1 -0.3633 -0.9436 0.4070 28 1 -0.3634 0.8243 0.6136 29 1 -0.6537 1.8358 -0.4162 30 1 3.5536 3.8110 1.5478 31 1 3.9785 3.4847 -0.1521 32 1 4.4838 5.8564 0.6364 33 1 3.4371 5.7554 -0.7999 34 1 2.3710 5.9913 2.0472 35 1 2.6365 7.3894 0.9767 36 1 0.2562 6.4391 0.9638 37 1 1.0317 6.5602 -0.6366 38 1 3.2670 -1.1419 -0.1691 39 1 0.4888 -2.2090 -1.0526 40 1 2.1092 -2.5603 -1.7991 41 1 1.6743 -5.4216 -2.7968 42 1 2.6599 -2.2439 1.9348 43 1 0.8855 -1.9811 1.6371 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043615683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:51 Heat of formation + Delta-G solvation = 100.783995 kcal Electronic energy + Delta-G solvation = -25113.018426 eV Core-core repulsion = 21582.873487 eV Total energy + Delta-G solvation = -3530.144939 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.56431 -39.62508 -37.53852 -36.94093 -34.62778 -33.33494 -32.07542 -30.19710 -29.16139 -27.52524 -26.96375 -24.88009 -24.82985 -23.65835 -22.41216 -21.95813 -20.34279 -19.01263 -18.72583 -17.12259 -16.90335 -16.43091 -16.29955 -15.60338 -15.21200 -14.84862 -14.77007 -14.50984 -14.39883 -14.01031 -13.80168 -13.67320 -13.26265 -12.94822 -12.52945 -12.17601 -11.88105 -11.62468 -11.57978 -11.53714 -11.47089 -11.35018 -11.22952 -10.91229 -10.74140 -10.35436 -10.26677 -10.04959 -9.74677 -9.62659 -9.57676 -8.83905 -8.49975 -8.19234 -6.94466 -5.81522 -3.14595 1.34169 2.39179 2.78293 3.30808 3.38253 3.41464 3.43573 3.45536 4.00366 4.21174 4.27329 4.35702 4.43690 4.63179 4.87416 4.98096 5.08260 5.15268 5.23300 5.23956 5.30127 5.31979 5.41420 5.41662 5.45935 5.47527 5.56229 5.71426 5.73215 5.85488 5.98905 6.08180 6.18817 6.40145 6.47190 6.54136 6.71864 6.95685 7.16289 7.29032 7.48436 7.66003 7.85972 7.92260 8.34084 8.99477 9.65600 10.51734 11.35691 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.038983 B = 0.002935 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.095467 B = 9538.378994 C = 9895.427416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.582 5.582 3 C 0.588 3.412 4 O -0.553 6.553 5 C -0.073 4.073 6 C 0.013 3.987 7 N -0.494 5.494 8 C 0.221 3.779 9 N -0.421 5.421 10 C 0.101 3.899 11 C -0.136 4.136 12 C -0.127 4.127 13 C -0.034 4.034 14 C 0.092 3.908 15 C 0.157 3.843 16 N -0.606 5.606 17 C -0.223 4.223 18 H 0.083 0.917 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.109 3.891 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.198 0.802 30 H 0.086 0.914 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.117 0.883 39 H 0.034 0.966 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.047 0.953 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 23.237 5.018 23.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.312 5.312 3 C 0.375 3.625 4 O -0.433 6.433 5 C -0.190 4.190 6 C -0.140 4.140 7 N -0.213 5.213 8 C -0.041 4.041 9 N -0.102 5.102 10 C -0.020 4.020 11 C -0.174 4.174 12 C -0.165 4.165 13 C -0.073 4.073 14 C -0.011 4.011 15 C 0.031 3.969 16 N -0.332 5.332 17 C -0.350 4.350 18 H 0.100 0.900 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.018 4.018 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.215 0.785 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.110 0.890 38 H 0.135 0.865 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.847 23.240 4.837 23.753 hybrid contribution 0.695 -1.575 0.063 1.723 sum -0.152 21.665 4.900 22.213 Atomic orbital electron populations 1.22481 0.79925 1.04234 1.02033 1.47688 1.07036 1.05479 1.71043 1.16845 0.86357 0.82234 0.77018 1.90765 1.13173 1.87342 1.52025 1.20757 0.95014 0.86486 1.16768 1.23720 0.93169 0.93988 1.03099 1.69980 1.26028 1.05043 1.20223 1.23441 0.82803 0.94476 1.03401 1.45124 1.09393 1.05570 1.50108 1.22135 0.79579 0.96771 1.03554 1.21962 1.00469 0.92814 1.02172 1.21714 0.93580 1.01317 0.99924 1.20269 0.98702 0.85625 1.02712 1.24147 0.98063 0.79136 0.99738 1.22690 0.97020 0.83290 0.93892 1.45702 1.81975 1.02207 1.03356 1.19038 1.41502 0.80133 0.94375 0.89960 1.24810 1.01875 0.98311 0.95354 1.69824 1.54529 1.34237 0.98040 0.86013 0.77429 0.84703 0.77399 1.20409 1.21672 1.21624 1.22981 0.98184 0.87207 0.93460 0.91726 0.89716 0.89982 0.78529 0.89535 0.87602 0.89035 0.90539 0.91007 0.89814 0.88451 0.88999 0.86497 0.94801 0.90400 0.93562 0.93431 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 7.45 59.85 0.45 1.19 16 2 N -0.58 -9.74 3.09 -177.27 -0.55 -10.29 16 3 C 0.59 10.12 7.64 -12.81 -0.10 10.02 16 4 O -0.55 -10.89 14.84 5.21 0.08 -10.81 16 5 C -0.07 -1.09 6.75 -82.35 -0.56 -1.65 16 6 C 0.01 0.18 9.76 -17.36 -0.17 0.01 16 7 N -0.49 -6.91 11.20 -10.35 -0.12 -7.03 16 8 C 0.22 2.66 7.63 -155.31 -1.19 1.48 16 9 N -0.42 -5.46 3.15 -109.76 -0.35 -5.81 16 10 C 0.10 1.05 6.28 -3.94 -0.02 1.03 16 11 C -0.14 -0.90 5.95 -26.51 -0.16 -1.05 16 12 C -0.13 -0.72 5.96 -26.44 -0.16 -0.88 16 13 C -0.03 -0.26 6.33 -27.47 -0.17 -0.43 16 14 C 0.09 1.84 4.40 -70.16 -0.31 1.53 16 15 C 0.16 3.66 6.93 -2.84 -0.02 3.64 16 16 N -0.61 -15.48 3.70 -177.92 -0.66 -16.14 16 17 C -0.22 -6.23 10.70 -15.05 -0.16 -6.39 16 18 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.07 11.39 55.49 0.63 -26.44 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 C 0.11 2.26 8.43 -2.97 -0.03 2.23 16 26 H 0.06 0.78 7.56 -51.93 -0.39 0.38 16 27 H 0.08 1.18 6.11 -51.93 -0.32 0.86 16 28 H 0.08 0.93 5.02 -51.93 -0.26 0.67 16 29 H 0.20 2.26 4.52 -52.48 -0.24 2.02 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.27 7.17 -51.93 -0.37 0.90 16 32 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 33 H 0.08 0.52 8.12 -51.93 -0.42 0.09 16 34 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.12 2.53 7.22 -51.93 -0.37 2.16 16 39 H 0.03 0.77 6.68 -51.93 -0.35 0.42 16 40 H 0.08 2.04 7.16 -51.93 -0.37 1.67 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.71 6.94 -51.92 -0.36 0.35 16 LS Contribution 337.57 15.07 5.09 5.09 Total: -1.00 -34.28 337.57 -9.54 -43.83 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -5.96 Total: 0.14 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -2.69 Total: 10.43 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: -1.04 Total: -65.71 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.08 Total: -10.81 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.28 -9.54 -43.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043615683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.611 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds