Wall clock time and date at job start Fri Apr 10 2020 17:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 120.00135 * 2 1 4 4 O 1.21680 * 120.00341 * 180.26565 * 3 2 1 5 5 C 1.46762 * 119.99857 * 0.27102 * 3 2 1 6 6 C 1.36833 * 126.91196 * 348.34780 * 5 3 2 7 7 N 1.33452 * 107.83846 * 179.97438 * 6 5 3 8 8 C 1.30560 * 109.68325 * 359.97438 * 7 6 5 9 9 N 1.34875 * 108.98617 * 0.04981 * 8 7 6 10 10 C 1.46444 * 124.98984 * 179.97438 * 9 8 7 11 11 C 1.53261 * 108.81879 * 342.95331 * 10 9 8 12 12 C 1.53158 * 109.43925 * 50.23020 * 11 10 9 13 13 C 1.51117 * 127.09268 * 180.10428 * 8 7 6 14 14 C 1.46501 * 120.00167 * 180.02562 * 2 1 3 15 15 C 1.53948 * 113.74332 * 38.74241 * 14 2 1 16 16 N 1.47805 * 86.03355 * 222.08491 * 15 14 2 17 17 C 1.36950 * 134.45370 * 204.64070 * 16 15 14 18 18 H 1.07997 * 119.99424 * 179.86879 * 17 16 15 19 19 C 1.38809 * 119.99797 * 359.87066 * 17 16 15 20 20 N 1.31618 * 119.99874 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99765 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47365 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47042 * 119.99898 * 21 19 17 24 24 H 1.48500 * 109.46911 * 239.99756 * 21 19 17 25 25 C 1.47573 * 91.05586 * 24.54707 * 16 15 14 26 26 H 1.09003 * 109.46905 * 83.33831 * 1 2 3 27 27 H 1.08996 * 109.46919 * 203.33039 * 1 2 3 28 28 H 1.08996 * 109.47302 * 323.33448 * 1 2 3 29 29 H 1.08003 * 126.08516 * 0.02562 * 6 5 3 30 30 H 1.08993 * 109.58054 * 102.76289 * 10 9 8 31 31 H 1.09002 * 109.57456 * 223.15980 * 10 9 8 32 32 H 1.09008 * 109.47378 * 170.21822 * 11 10 9 33 33 H 1.08998 * 109.48181 * 290.23520 * 11 10 9 34 34 H 1.08997 * 109.51662 * 50.58400 * 12 11 10 35 35 H 1.09002 * 109.51023 * 170.73065 * 12 11 10 36 36 H 1.08993 * 109.71235 * 44.23499 * 13 8 7 37 37 H 1.09004 * 109.73960 * 283.63204 * 13 8 7 38 38 H 1.09006 * 112.94512 * 170.33246 * 14 2 1 39 39 H 1.09001 * 113.76557 * 336.34695 * 15 14 2 40 40 H 1.08995 * 113.77139 * 107.74679 * 15 14 2 41 41 H 0.97006 * 119.99696 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.77243 * 221.15073 * 25 16 15 43 43 H 1.09010 * 113.77099 * 89.75487 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3557 1.1673 -0.0049 5 6 1.4051 2.4382 0.0060 6 6 0.0653 2.6147 -0.2091 7 7 -0.1951 3.9202 -0.1163 8 6 0.9062 4.5708 0.1453 9 7 1.9257 3.6919 0.2294 10 6 3.3188 4.0459 0.5097 11 6 3.5054 5.5478 0.2679 12 6 2.4126 6.3232 1.0098 13 6 1.0610 6.0623 0.3327 14 6 2.1975 -1.2687 -0.0006 15 6 1.5556 -2.3547 -0.8829 16 7 1.8611 -3.2879 0.2218 17 6 2.0640 -4.6396 0.3070 18 1 2.2810 -5.0938 1.2625 19 6 1.9907 -5.4258 -0.8347 20 7 1.7258 -4.8721 -1.9990 21 14 2.2667 -7.2696 -0.7182 22 1 2.5452 -7.6404 0.6925 23 1 1.0515 -7.9826 -1.1873 24 1 3.4235 -7.6515 -1.5675 25 6 1.8621 -2.1786 1.1950 26 1 -0.3633 0.1192 -1.0208 27 1 -0.3633 -0.9436 0.4070 28 1 -0.3634 0.8243 0.6136 29 1 -0.6537 1.8358 -0.4162 30 1 3.5536 3.8110 1.5478 31 1 3.9785 3.4847 -0.1521 32 1 4.4838 5.8564 0.6364 33 1 3.4371 5.7554 -0.7999 34 1 2.3710 5.9913 2.0472 35 1 2.6365 7.3894 0.9767 36 1 0.2562 6.4391 0.9638 37 1 1.0317 6.5602 -0.6366 38 1 3.2670 -1.1419 -0.1691 39 1 0.4888 -2.2090 -1.0526 40 1 2.1092 -2.5603 -1.7991 41 1 1.6743 -5.4216 -2.7968 42 1 2.6599 -2.2439 1.9348 43 1 0.8855 -1.9811 1.6371 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043615683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:50 Heat of formation + Delta-G solvation = 78.722762 kcal Electronic energy + Delta-G solvation = -25113.975073 eV Core-core repulsion = 21582.873487 eV Total energy + Delta-G solvation = -3531.101586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.55528 -41.09417 -39.17378 -37.68842 -36.06241 -34.20402 -34.06058 -31.17212 -30.26438 -29.14343 -28.27205 -26.65806 -25.90990 -24.96899 -23.62222 -22.90045 -21.63705 -20.34057 -19.82270 -18.85489 -18.26997 -17.80079 -17.30754 -17.01011 -16.72138 -16.27222 -15.75811 -15.66100 -15.27735 -15.14842 -14.99203 -14.77145 -14.53565 -14.07363 -13.95664 -13.66725 -13.32826 -13.21069 -12.90825 -12.83556 -12.60924 -12.50710 -12.19041 -12.11393 -12.03205 -11.94828 -11.91313 -11.57990 -11.33708 -10.93080 -10.90299 -10.71445 -9.71239 -9.46955 -8.98427 -7.94382 -5.28919 0.23344 1.34754 1.46237 1.47222 1.57412 1.73870 2.09313 2.18437 2.47495 3.21100 3.26096 3.35662 3.43931 3.58907 3.74238 3.77327 3.79105 4.11559 4.15523 4.26686 4.27676 4.29512 4.39292 4.48270 4.48766 4.59380 4.68316 4.80573 4.81816 4.87396 4.88788 4.94463 5.07512 5.13750 5.18247 5.20223 5.27174 5.44147 5.44827 5.63118 5.86542 6.05629 6.29343 6.82471 6.87115 7.01632 7.55381 8.47979 9.22797 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.038983 B = 0.002935 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.095467 B = 9538.378994 C = 9895.427416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.582 5.582 3 C 0.587 3.413 4 O -0.587 6.587 5 C -0.105 4.105 6 C 0.024 3.976 7 N -0.520 5.520 8 C 0.231 3.769 9 N -0.427 5.427 10 C 0.095 3.905 11 C -0.129 4.129 12 C -0.120 4.120 13 C -0.037 4.037 14 C 0.118 3.882 15 C 0.162 3.838 16 N -0.635 5.635 17 C -0.235 4.235 18 H 0.087 0.913 19 C -0.065 4.065 20 N -0.952 5.952 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.290 1.290 24 H -0.293 1.293 25 C 0.116 3.884 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.106 0.894 29 H 0.215 0.785 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.250 0.750 42 H 0.052 0.948 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.696 25.412 6.229 26.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.312 5.312 3 C 0.377 3.623 4 O -0.470 6.470 5 C -0.222 4.222 6 C -0.130 4.130 7 N -0.239 5.239 8 C -0.031 4.031 9 N -0.108 5.108 10 C -0.026 4.026 11 C -0.166 4.166 12 C -0.158 4.158 13 C -0.075 4.075 14 C 0.013 3.987 15 C 0.035 3.965 16 N -0.362 5.362 17 C -0.363 4.363 18 H 0.105 0.895 19 C -0.258 4.258 20 N -0.600 5.600 21 Si 0.810 3.190 22 H -0.189 1.189 23 H -0.216 1.216 24 H -0.220 1.220 25 C -0.010 4.010 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.124 0.876 29 H 0.232 0.768 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.071 0.929 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.604 25.450 6.083 26.216 hybrid contribution 0.910 -2.120 -0.297 2.326 sum -0.695 23.331 5.786 24.048 Atomic orbital electron populations 1.22699 0.77574 1.04977 1.03510 1.47583 1.08326 1.04248 1.71058 1.17134 0.86047 0.82996 0.76130 1.90741 1.14721 1.87874 1.53621 1.20482 0.95491 0.86399 1.19827 1.24041 0.92852 0.94624 1.01472 1.70045 1.27051 1.05110 1.21695 1.24421 0.81965 0.96211 1.00537 1.45361 1.10487 1.05033 1.49896 1.22305 0.78065 0.99357 1.02878 1.21992 1.02252 0.89825 1.02558 1.21728 0.91883 1.02974 0.99213 1.20589 1.00376 0.82376 1.04171 1.23417 0.96885 0.80209 0.98187 1.22552 0.97034 0.84320 0.92554 1.45995 1.82342 1.02433 1.05458 1.19420 1.40685 0.81587 0.94618 0.89523 1.25665 1.02351 1.02714 0.95092 1.70008 1.56006 1.35519 0.98505 0.84959 0.76829 0.79350 0.77849 1.18873 1.21650 1.21990 1.23076 0.99424 0.85336 0.93136 0.90280 0.90082 0.87621 0.76844 0.89564 0.90005 0.86701 0.90524 0.91201 0.86607 0.87002 0.87368 0.88627 0.93999 0.94154 0.94105 0.92929 0.92053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.35 7.45 127.77 0.95 2.30 16 2 N -0.58 -19.49 3.09 -832.99 -2.58 -22.06 16 3 C 0.59 20.48 7.64 86.47 0.66 21.14 16 4 O -0.59 -23.97 14.84 -4.29 -0.06 -24.04 16 5 C -0.11 -3.11 6.75 40.14 0.27 -2.84 16 6 C 0.02 0.62 9.76 84.12 0.82 1.44 16 7 N -0.52 -13.61 11.20 -186.66 -2.09 -15.70 16 8 C 0.23 5.12 7.63 138.30 1.06 6.17 16 9 N -0.43 -10.72 3.15 -501.17 -1.58 -12.30 16 10 C 0.10 1.92 6.28 86.48 0.54 2.47 16 11 C -0.13 -1.37 5.95 30.73 0.18 -1.19 16 12 C -0.12 -0.92 5.96 30.78 0.18 -0.74 16 13 C -0.04 -0.43 6.33 30.12 0.19 -0.23 16 14 C 0.12 4.80 4.40 46.75 0.21 5.00 16 15 C 0.16 7.74 6.93 86.44 0.60 8.34 16 16 N -0.64 -32.90 3.70 -716.82 -2.65 -35.56 16 17 C -0.24 -13.26 10.70 84.03 0.90 -12.36 16 18 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 19 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 20 N -0.95 -57.54 11.39 21.65 0.25 -57.29 16 21 Si 0.98 45.84 29.55 68.60 2.03 47.86 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 25 C 0.12 4.79 8.43 86.49 0.73 5.52 16 26 H 0.08 1.79 7.56 -2.39 -0.02 1.77 16 27 H 0.08 2.13 6.11 -2.39 -0.01 2.12 16 28 H 0.11 2.19 5.02 -2.39 -0.01 2.18 16 29 H 0.22 4.49 4.52 -2.91 -0.01 4.48 16 30 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.08 2.04 7.17 -2.39 -0.02 2.02 16 32 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.08 0.85 8.12 -2.39 -0.02 0.83 16 34 H 0.07 0.61 8.12 -2.39 -0.02 0.59 16 35 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.10 4.33 7.22 -2.38 -0.02 4.31 16 39 H 0.04 1.93 6.68 -2.39 -0.02 1.91 16 40 H 0.04 2.22 7.16 -2.39 -0.02 2.20 16 41 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.27 6.94 -2.38 -0.02 2.26 16 Total: -1.00 -76.14 337.57 2.10 -74.04 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 1.03 Total: 13.28 kcal Atomic # 6 Polarization: 24.01 SS G_CDS: 7.76 Total: 31.77 kcal Atomic # 7 Polarization: -134.26 SS G_CDS: -8.66 Total: -142.92 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.04 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.14 2.10 -74.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043615683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.760 kcal (2) G-P(sol) polarization free energy of solvation -76.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds