Wall clock time and date at job start Fri Apr 10 2020 17:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99871 * 2 1 4 4 O 1.21278 * 119.99546 * 185.05237 * 3 2 1 5 5 C 1.50694 * 119.99888 * 5.05794 * 3 2 1 6 6 H 1.09001 * 109.68154 * 335.52833 * 5 3 2 7 7 C 1.53402 * 109.68044 * 215.01616 * 5 3 2 8 8 C 1.53118 * 109.45557 * 190.60025 * 7 5 3 9 9 C 1.53356 * 109.52938 * 70.00557 * 8 7 5 10 10 C 1.50866 * 108.41761 * 310.03782 * 9 8 7 11 11 N 1.33577 * 128.03475 * 196.75304 * 10 9 8 12 12 C 1.30746 * 109.14776 * 179.84328 * 11 10 9 13 13 N 1.35302 * 108.77167 * 0.02562 * 12 11 10 14 14 H 0.97000 * 126.50209 * 180.02562 * 13 12 11 15 15 C 1.35027 * 123.98831 * 16.64248 * 10 9 8 16 16 C 1.46501 * 120.00195 * 180.02562 * 2 1 3 17 17 C 1.53952 * 113.74051 * 36.66668 * 16 2 1 18 18 N 1.47579 * 86.11694 * 222.05118 * 17 16 2 19 19 C 1.36935 * 134.48998 * 204.64376 * 18 17 16 20 20 H 1.07994 * 120.00047 * 172.31349 * 19 18 17 21 21 C 1.38819 * 119.99774 * 352.31257 * 19 18 17 22 22 N 1.31614 * 120.00039 * 5.15229 * 21 19 18 23 23 Si 1.86800 * 119.99418 * 185.15675 * 21 19 18 24 24 H 1.48496 * 109.47264 * 94.96665 * 23 21 19 25 25 H 1.48509 * 109.46859 * 214.96303 * 23 21 19 26 26 H 1.48493 * 109.47344 * 334.96067 * 23 21 19 27 27 C 1.47574 * 91.01548 * 24.64250 * 18 17 16 28 28 H 1.08986 * 109.47667 * 84.75544 * 1 2 3 29 29 H 1.09000 * 109.46898 * 204.76329 * 1 2 3 30 30 H 1.09001 * 109.46774 * 324.75421 * 1 2 3 31 31 H 1.09000 * 109.47571 * 310.59696 * 7 5 3 32 32 H 1.09012 * 109.47156 * 70.60574 * 7 5 3 33 33 H 1.08994 * 109.46109 * 190.03697 * 8 7 5 34 34 H 1.09002 * 109.45839 * 309.99643 * 8 7 5 35 35 H 1.09002 * 109.68758 * 190.29941 * 9 8 7 36 36 H 1.08996 * 109.68792 * 69.78471 * 9 8 7 37 37 H 1.08002 * 125.61238 * 180.02562 * 12 11 10 38 38 H 1.08990 * 112.94516 * 168.40261 * 16 2 1 39 39 H 1.09006 * 113.76969 * 336.35612 * 17 16 2 40 40 H 1.09000 * 113.76546 * 107.74478 * 17 16 2 41 41 H 0.97003 * 120.00010 * 179.97438 * 22 21 19 42 42 H 1.08999 * 113.77102 * 221.06125 * 27 18 17 43 43 H 1.08996 * 113.87535 * 89.67519 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3481 1.1692 -0.0925 5 6 1.3898 2.4697 0.1151 6 1 0.3674 2.3377 -0.2392 7 6 2.0921 3.5454 -0.7232 8 6 1.4923 4.9166 -0.3995 9 6 1.9016 5.3333 1.0184 10 6 1.6027 4.1900 1.9562 11 7 1.5115 4.2207 3.2886 12 6 1.2342 3.0206 3.7272 13 7 1.1407 2.1814 2.6699 14 1 0.9441 1.2321 2.7024 15 6 1.3746 2.9220 1.5520 16 6 2.1976 -1.2687 -0.0006 17 6 1.5286 -2.3703 -0.8426 18 7 1.8682 -3.2839 0.2655 19 6 2.0737 -4.6339 0.3675 20 1 2.4388 -5.0562 1.2920 21 6 1.8128 -5.4596 -0.7174 22 7 1.4655 -4.9364 -1.8741 23 14 1.9546 -7.3133 -0.5356 24 1 0.6183 -7.8845 -0.2305 25 1 2.4651 -7.8973 -1.8020 26 1 2.8933 -7.6319 0.5700 27 6 1.8973 -2.1583 1.2194 28 1 -0.3634 0.0939 -1.0232 29 1 -0.3633 -0.9332 0.4305 30 1 -0.3633 0.8393 0.5931 31 1 3.1569 3.5503 -0.4899 32 1 1.9531 3.3289 -1.7825 33 1 1.8604 5.6520 -1.1149 34 1 0.4055 4.8615 -0.4623 35 1 1.3343 6.2137 1.3206 36 1 2.9679 5.5581 1.0418 37 1 1.1017 2.7446 4.7629 38 1 3.2615 -1.1450 -0.2023 39 1 0.4569 -2.2273 -0.9815 40 1 2.0532 -2.5925 -1.7718 41 1 1.2835 -5.5134 -2.6323 42 1 2.7164 -2.2113 1.9366 43 1 0.9349 -1.9518 1.6876 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043839586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:54 Heat of formation + Delta-G solvation = 77.882114 kcal Electronic energy + Delta-G solvation = -25458.313922 eV Core-core repulsion = 21927.175883 eV Total energy + Delta-G solvation = -3531.138039 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.49483 -39.99353 -37.96101 -36.34864 -34.67144 -33.21829 -32.06297 -30.25700 -29.07131 -27.82596 -26.80910 -24.95838 -24.77353 -22.99740 -22.35655 -21.74896 -20.01503 -19.03106 -18.67483 -17.88707 -17.31558 -16.84038 -16.00856 -15.50106 -15.14298 -14.83880 -14.80211 -14.44248 -14.06533 -13.85458 -13.64778 -13.57712 -13.07225 -12.64176 -12.51989 -12.47424 -11.99359 -11.94450 -11.66537 -11.43358 -11.37169 -11.09382 -10.97369 -10.96274 -10.81409 -10.38853 -10.20667 -10.12377 -9.97136 -9.68488 -9.53317 -8.89326 -8.31451 -8.25937 -7.01201 -5.90458 -3.23042 1.85340 2.63097 2.96809 2.97237 3.14684 3.32774 3.38419 3.40167 4.26306 4.36634 4.46409 4.57235 4.63507 4.88237 5.01687 5.03945 5.09478 5.15037 5.19101 5.30623 5.31731 5.39760 5.47125 5.58217 5.71916 5.72827 5.79994 5.85472 5.93955 5.96233 6.02936 6.10632 6.20986 6.27376 6.43123 6.61257 6.63398 7.07588 7.18598 7.22823 7.41464 7.58799 7.84628 7.94440 8.27532 8.91952 9.57893 10.44499 11.27247 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.003306 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.961532 B = 8466.169376 C = 8969.533452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.602 5.602 3 C 0.512 3.488 4 O -0.531 6.531 5 C -0.031 4.031 6 H 0.103 0.897 7 C -0.102 4.102 8 C -0.116 4.116 9 C -0.035 4.035 10 C 0.014 3.986 11 N -0.487 5.487 12 C 0.182 3.818 13 N -0.557 5.557 14 H 0.421 0.579 15 C -0.012 4.012 16 C 0.088 3.912 17 C 0.161 3.839 18 N -0.604 5.604 19 C -0.228 4.228 20 H 0.082 0.918 21 C -0.003 4.003 22 N -0.917 5.917 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.107 3.893 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.209 0.791 38 H 0.116 0.884 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.256 0.744 42 H 0.046 0.954 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 18.356 4.727 19.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.335 5.335 3 C 0.298 3.702 4 O -0.407 6.407 5 C -0.053 4.053 6 H 0.120 0.880 7 C -0.141 4.141 8 C -0.154 4.154 9 C -0.073 4.073 10 C -0.116 4.116 11 N -0.206 5.206 12 C -0.101 4.101 13 N -0.159 5.159 14 H 0.259 0.741 15 C -0.129 4.129 16 C -0.016 4.016 17 C 0.035 3.965 18 N -0.330 5.330 19 C -0.355 4.355 20 H 0.100 0.900 21 C -0.201 4.201 22 N -0.563 5.563 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.204 1.204 27 C -0.020 4.020 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.225 0.775 38 H 0.134 0.866 39 H 0.052 0.948 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -3.996 18.720 5.055 19.799 hybrid contribution -0.497 -2.521 -0.193 2.577 sum -4.494 16.199 4.862 17.500 Atomic orbital electron populations 1.21851 0.80028 1.02981 1.02203 1.48148 1.06794 1.06269 1.72263 1.20492 0.88087 0.84952 0.76670 1.90688 1.14092 1.87046 1.48894 1.19943 1.01275 0.93988 0.90119 0.87962 1.21513 1.01344 0.92413 0.98786 1.21607 1.01078 0.96543 0.96146 1.19961 1.01769 0.94244 0.91301 1.20474 1.06687 0.93680 0.90754 1.69990 1.19046 1.21404 1.10182 1.25027 1.05491 0.85418 0.94136 1.43012 1.53829 1.12220 1.06814 0.74085 1.20351 1.11480 0.92754 0.88281 1.24117 0.98157 0.79807 0.99476 1.22564 0.96673 0.83464 0.93839 1.45614 1.81307 1.02147 1.03937 1.18988 1.37979 0.79718 0.98860 0.89997 1.24856 1.01097 0.98269 0.95829 1.69828 1.51887 1.33919 1.00666 0.86090 0.77671 0.84814 0.77151 1.21502 1.21561 1.20436 1.22975 0.97881 0.87610 0.93560 0.91956 0.89756 0.92268 0.89741 0.90552 0.90564 0.91506 0.90440 0.90499 0.77473 0.86643 0.94759 0.90974 0.93438 0.93619 0.94999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.52 59.85 0.51 1.34 16 2 N -0.60 -8.93 3.09 -175.74 -0.54 -9.48 16 3 C 0.51 7.74 6.62 -10.99 -0.07 7.67 16 4 O -0.53 -10.17 15.57 5.56 0.09 -10.08 16 5 C -0.03 -0.35 2.15 -92.74 -0.20 -0.55 16 6 H 0.10 0.97 6.23 -51.93 -0.32 0.65 16 7 C -0.10 -1.08 5.06 -26.46 -0.13 -1.21 16 8 C -0.12 -0.96 5.90 -26.49 -0.16 -1.12 16 9 C -0.03 -0.34 6.30 -27.62 -0.17 -0.52 16 10 C 0.01 0.18 6.98 -82.89 -0.58 -0.39 16 11 N -0.49 -6.50 11.25 -10.74 -0.12 -6.62 16 12 C 0.18 1.94 13.05 -89.93 -1.17 0.77 16 13 N -0.56 -6.02 6.08 -10.29 -0.06 -6.08 16 14 H 0.42 3.96 8.96 -40.82 -0.37 3.60 16 15 C -0.01 -0.14 6.37 -81.85 -0.52 -0.66 16 16 C 0.09 1.66 4.41 -70.13 -0.31 1.35 16 17 C 0.16 3.61 6.79 -2.97 -0.02 3.59 16 18 N -0.60 -14.98 3.69 -178.08 -0.66 -15.63 16 19 C -0.23 -6.25 10.69 -15.06 -0.16 -6.42 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C 0.00 -0.09 5.50 -17.43 -0.10 -0.18 16 22 N -0.92 -26.50 11.54 55.49 0.64 -25.86 16 23 Si 0.91 21.65 29.56 -169.99 -5.02 16.62 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 C 0.11 2.10 8.44 -2.98 -0.03 2.07 16 28 H 0.06 0.67 8.14 -51.94 -0.42 0.25 16 29 H 0.08 1.05 6.16 -51.93 -0.32 0.73 16 30 H 0.06 0.52 6.50 -51.93 -0.34 0.19 16 31 H 0.08 1.06 7.48 -51.93 -0.39 0.67 16 32 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.21 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.12 2.43 7.22 -51.93 -0.38 2.06 16 39 H 0.03 0.76 6.59 -51.93 -0.34 0.41 16 40 H 0.07 1.84 7.41 -51.93 -0.38 1.46 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.03 0.57 7.06 -51.93 -0.37 0.21 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -34.14 343.66 -9.74 -43.88 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -6.13 Total: 2.33 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -3.11 Total: 5.74 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.74 Total: -63.67 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.14 -9.74 -43.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043839586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.762 kcal (2) G-P(sol) polarization free energy of solvation -34.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds