Wall clock time and date at job start Fri Apr 10 2020 17:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34780 * 119.99871 * 2 1 4 4 O 1.21278 * 119.99546 * 185.05237 * 3 2 1 5 5 C 1.50694 * 119.99888 * 5.05794 * 3 2 1 6 6 H 1.09001 * 109.68154 * 335.52833 * 5 3 2 7 7 C 1.53402 * 109.68044 * 215.01616 * 5 3 2 8 8 C 1.53118 * 109.45557 * 190.60025 * 7 5 3 9 9 C 1.53356 * 109.52938 * 70.00557 * 8 7 5 10 10 C 1.50866 * 108.41761 * 310.03782 * 9 8 7 11 11 N 1.33577 * 128.03475 * 196.75304 * 10 9 8 12 12 C 1.30746 * 109.14776 * 179.84328 * 11 10 9 13 13 N 1.35302 * 108.77167 * 0.02562 * 12 11 10 14 14 H 0.97000 * 126.50209 * 180.02562 * 13 12 11 15 15 C 1.35027 * 123.98831 * 16.64248 * 10 9 8 16 16 C 1.46501 * 120.00195 * 180.02562 * 2 1 3 17 17 C 1.53952 * 113.74051 * 36.66668 * 16 2 1 18 18 N 1.47579 * 86.11694 * 222.05118 * 17 16 2 19 19 C 1.36935 * 134.48998 * 204.64376 * 18 17 16 20 20 H 1.07994 * 120.00047 * 172.31349 * 19 18 17 21 21 C 1.38819 * 119.99774 * 352.31257 * 19 18 17 22 22 N 1.31614 * 120.00039 * 5.15229 * 21 19 18 23 23 Si 1.86800 * 119.99418 * 185.15675 * 21 19 18 24 24 H 1.48496 * 109.47264 * 94.96665 * 23 21 19 25 25 H 1.48509 * 109.46859 * 214.96303 * 23 21 19 26 26 H 1.48493 * 109.47344 * 334.96067 * 23 21 19 27 27 C 1.47574 * 91.01548 * 24.64250 * 18 17 16 28 28 H 1.08986 * 109.47667 * 84.75544 * 1 2 3 29 29 H 1.09000 * 109.46898 * 204.76329 * 1 2 3 30 30 H 1.09001 * 109.46774 * 324.75421 * 1 2 3 31 31 H 1.09000 * 109.47571 * 310.59696 * 7 5 3 32 32 H 1.09012 * 109.47156 * 70.60574 * 7 5 3 33 33 H 1.08994 * 109.46109 * 190.03697 * 8 7 5 34 34 H 1.09002 * 109.45839 * 309.99643 * 8 7 5 35 35 H 1.09002 * 109.68758 * 190.29941 * 9 8 7 36 36 H 1.08996 * 109.68792 * 69.78471 * 9 8 7 37 37 H 1.08002 * 125.61238 * 180.02562 * 12 11 10 38 38 H 1.08990 * 112.94516 * 168.40261 * 16 2 1 39 39 H 1.09006 * 113.76969 * 336.35612 * 17 16 2 40 40 H 1.09000 * 113.76546 * 107.74478 * 17 16 2 41 41 H 0.97003 * 120.00010 * 179.97438 * 22 21 19 42 42 H 1.08999 * 113.77102 * 221.06125 * 27 18 17 43 43 H 1.08996 * 113.87535 * 89.67519 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3481 1.1692 -0.0925 5 6 1.3898 2.4697 0.1151 6 1 0.3674 2.3377 -0.2392 7 6 2.0921 3.5454 -0.7232 8 6 1.4923 4.9166 -0.3995 9 6 1.9016 5.3333 1.0184 10 6 1.6027 4.1900 1.9562 11 7 1.5115 4.2207 3.2886 12 6 1.2342 3.0206 3.7272 13 7 1.1407 2.1814 2.6699 14 1 0.9441 1.2321 2.7024 15 6 1.3746 2.9220 1.5520 16 6 2.1976 -1.2687 -0.0006 17 6 1.5286 -2.3703 -0.8426 18 7 1.8682 -3.2839 0.2655 19 6 2.0737 -4.6339 0.3675 20 1 2.4388 -5.0562 1.2920 21 6 1.8128 -5.4596 -0.7174 22 7 1.4655 -4.9364 -1.8741 23 14 1.9546 -7.3133 -0.5356 24 1 0.6183 -7.8845 -0.2305 25 1 2.4651 -7.8973 -1.8020 26 1 2.8933 -7.6319 0.5700 27 6 1.8973 -2.1583 1.2194 28 1 -0.3634 0.0939 -1.0232 29 1 -0.3633 -0.9332 0.4305 30 1 -0.3633 0.8393 0.5931 31 1 3.1569 3.5503 -0.4899 32 1 1.9531 3.3289 -1.7825 33 1 1.8604 5.6520 -1.1149 34 1 0.4055 4.8615 -0.4623 35 1 1.3343 6.2137 1.3206 36 1 2.9679 5.5581 1.0418 37 1 1.1017 2.7446 4.7629 38 1 3.2615 -1.1450 -0.2023 39 1 0.4569 -2.2273 -0.9815 40 1 2.0532 -2.5925 -1.7718 41 1 1.2835 -5.5134 -2.6323 42 1 2.7164 -2.2113 1.9366 43 1 0.9349 -1.9518 1.6876 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043839586.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:53 Heat of formation + Delta-G solvation = 55.927371 kcal Electronic energy + Delta-G solvation = -25459.265951 eV Core-core repulsion = 21927.175883 eV Total energy + Delta-G solvation = -3532.090068 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.35866 -41.30534 -39.48064 -37.24680 -36.05729 -34.32732 -33.82978 -31.19257 -29.89398 -29.57807 -27.99158 -26.67185 -26.00605 -24.44661 -23.16699 -22.70664 -21.40123 -20.09491 -19.83205 -18.91120 -18.80849 -18.34653 -17.33146 -16.94943 -16.43903 -16.12370 -15.75821 -15.65224 -15.30431 -15.08610 -14.72037 -14.44431 -14.40819 -13.94559 -13.67113 -13.47251 -13.42226 -13.28710 -13.22096 -12.86271 -12.78044 -12.62313 -12.22462 -12.08268 -11.99647 -11.82006 -11.75444 -11.60564 -11.21430 -10.90467 -10.83650 -10.66189 -9.65650 -9.14037 -8.98438 -7.98460 -5.31859 0.97235 1.44471 1.45014 1.45659 1.54894 1.87465 2.14319 2.17013 2.45468 3.19622 3.33338 3.41828 3.55825 3.73287 3.77348 3.84320 4.08281 4.17397 4.24355 4.27982 4.34683 4.36813 4.46030 4.53567 4.59150 4.65660 4.73295 4.80301 4.88144 5.01519 5.01995 5.13406 5.14765 5.15805 5.20577 5.30536 5.43451 5.46392 5.62565 5.77831 5.84904 6.34525 6.45986 6.85015 7.05265 7.09972 7.53127 8.46627 9.19209 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.030232 B = 0.003306 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.961532 B = 8466.169376 C = 8969.533452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.597 5.597 3 C 0.512 3.488 4 O -0.577 6.577 5 C -0.019 4.019 6 H 0.131 0.869 7 C -0.103 4.103 8 C -0.105 4.105 9 C -0.038 4.038 10 C -0.002 4.002 11 N -0.524 5.524 12 C 0.189 3.811 13 N -0.555 5.555 14 H 0.427 0.573 15 C -0.028 4.028 16 C 0.113 3.887 17 C 0.165 3.835 18 N -0.635 5.635 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.061 4.061 22 N -0.949 5.949 23 Si 0.979 3.021 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.268 1.268 27 C 0.116 3.884 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.244 0.756 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.032 0.968 41 H 0.251 0.749 42 H 0.048 0.952 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.370 19.322 5.811 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.329 5.329 3 C 0.301 3.699 4 O -0.456 6.456 5 C -0.041 4.041 6 H 0.148 0.852 7 C -0.142 4.142 8 C -0.142 4.142 9 C -0.076 4.076 10 C -0.132 4.132 11 N -0.243 5.243 12 C -0.094 4.094 13 N -0.158 5.158 14 H 0.267 0.733 15 C -0.145 4.145 16 C 0.008 3.992 17 C 0.039 3.961 18 N -0.363 5.363 19 C -0.368 4.368 20 H 0.103 0.897 21 C -0.254 4.254 22 N -0.597 5.597 23 Si 0.807 3.193 24 H -0.210 1.210 25 H -0.222 1.222 26 H -0.193 1.193 27 C -0.010 4.010 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.260 0.740 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.619 19.716 6.164 21.407 hybrid contribution 0.032 -2.751 -0.459 2.789 sum -5.587 16.965 5.705 18.750 Atomic orbital electron populations 1.22085 0.77420 1.04125 1.03706 1.48068 1.08168 1.04752 1.71922 1.21155 0.87663 0.85886 0.75207 1.90674 1.16369 1.87706 1.50857 1.19964 1.02084 0.91686 0.90403 0.85178 1.21546 0.99829 0.93562 0.99237 1.21570 1.01785 0.95433 0.95446 1.20072 1.01592 0.93999 0.91923 1.20944 1.06482 0.94713 0.91032 1.70007 1.20665 1.22936 1.10715 1.25775 1.03409 0.84740 0.95431 1.43047 1.53633 1.12539 1.06561 0.73316 1.20432 1.12417 0.92945 0.88668 1.23335 0.96755 0.81188 0.97909 1.22436 0.96763 0.84642 0.92283 1.45909 1.81695 1.02381 1.06268 1.19357 1.37211 0.81332 0.98865 0.89708 1.25666 1.01625 1.02527 0.95620 1.70000 1.53486 1.35018 1.01195 0.85058 0.77764 0.79587 0.76905 1.21042 1.22167 1.19280 1.23073 0.99299 0.85411 0.93194 0.90766 0.90417 0.88834 0.92417 0.89462 0.88478 0.90055 0.89527 0.91121 0.74026 0.89277 0.93946 0.95002 0.94031 0.93337 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 8.52 127.77 1.09 2.46 16 2 N -0.60 -16.92 3.09 -828.32 -2.56 -19.48 16 3 C 0.51 14.98 6.62 87.65 0.58 15.56 16 4 O -0.58 -22.37 15.57 -3.02 -0.05 -22.42 16 5 C -0.02 -0.40 2.15 -12.17 -0.03 -0.42 16 6 H 0.13 1.97 6.23 -2.39 -0.01 1.96 16 7 C -0.10 -2.01 5.06 30.77 0.16 -1.85 16 8 C -0.10 -1.47 5.90 30.75 0.18 -1.29 16 9 C -0.04 -0.69 6.30 30.02 0.19 -0.50 16 10 C 0.00 -0.04 6.98 41.61 0.29 0.25 16 11 N -0.52 -13.14 11.25 -187.90 -2.11 -15.25 16 12 C 0.19 3.60 13.05 180.11 2.35 5.95 16 13 N -0.56 -10.67 6.08 -186.46 -1.13 -11.80 16 14 H 0.43 6.85 8.96 -92.71 -0.83 6.02 16 15 C -0.03 -0.62 6.37 41.14 0.26 -0.35 16 16 C 0.11 4.28 4.41 46.75 0.21 4.48 16 17 C 0.16 7.54 6.79 86.48 0.59 8.13 16 18 N -0.64 -31.70 3.69 -717.32 -2.65 -34.35 16 19 C -0.24 -13.20 10.69 84.04 0.90 -12.30 16 20 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 21 C -0.06 -3.39 5.50 84.86 0.47 -2.92 16 22 N -0.95 -56.09 11.54 21.65 0.25 -55.84 16 23 Si 0.98 44.83 29.56 68.60 2.03 46.86 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 26 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 27 C 0.12 4.44 8.44 86.48 0.73 5.17 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.72 6.16 -2.39 -0.01 1.71 16 30 H 0.09 1.27 6.50 -2.39 -0.02 1.26 16 31 H 0.06 1.45 7.48 -2.39 -0.02 1.43 16 32 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 35 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.24 2.45 8.06 -2.91 -0.02 2.43 16 38 H 0.09 3.88 7.22 -2.39 -0.02 3.87 16 39 H 0.04 1.86 6.59 -2.38 -0.02 1.85 16 40 H 0.03 1.69 7.41 -2.39 -0.02 1.68 16 41 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.06 2.08 7.06 -2.39 -0.02 2.06 16 Total: -1.00 -76.19 343.66 1.94 -74.25 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.21 Total: 15.70 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: 7.96 Total: 22.35 kcal Atomic # 7 Polarization: -128.52 SS G_CDS: -8.21 Total: -136.73 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.05 Total: -22.42 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -76.19 1.94 -74.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043839586.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.173 kcal (2) G-P(sol) polarization free energy of solvation -76.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds