Wall clock time and date at job start Fri Apr 10 2020 17:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00212 * 2 1 4 4 O 1.21281 * 119.99848 * 180.02562 * 3 2 1 5 5 C 1.50695 * 119.99773 * 359.97438 * 3 2 1 6 6 H 1.08999 * 109.48167 * 60.01590 * 5 3 2 7 7 C 1.53118 * 109.47554 * 180.02562 * 5 3 2 8 8 C 1.53348 * 109.54440 * 189.99574 * 7 5 3 9 9 C 1.50864 * 108.41793 * 310.05245 * 8 7 5 10 10 N 1.33579 * 128.03249 * 196.73000 * 9 8 7 11 11 C 1.30754 * 109.14567 * 179.85552 * 10 9 8 12 12 N 1.35308 * 108.76604 * 0.27442 * 11 10 9 13 13 H 0.97004 * 126.49065 * 179.76893 * 12 11 10 14 14 C 1.35026 * 123.98925 * 16.61590 * 9 8 7 15 15 C 1.50656 * 124.45593 * 0.19527 * 14 9 8 16 16 C 1.46500 * 119.99890 * 179.97438 * 2 1 3 17 17 C 1.53948 * 113.73965 * 36.67993 * 16 2 1 18 18 N 1.47581 * 86.11424 * 222.04392 * 17 16 2 19 19 C 1.36937 * 134.49500 * 204.63675 * 18 17 16 20 20 H 1.08003 * 120.00349 * 179.97438 * 19 18 17 21 21 C 1.38814 * 119.99805 * 0.02562 * 19 18 17 22 22 N 1.31619 * 119.99987 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99902 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47037 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47128 * 120.00134 * 23 21 19 26 26 H 1.48506 * 109.46824 * 240.00007 * 23 21 19 27 27 C 1.47582 * 91.01491 * 24.64031 * 18 17 16 28 28 H 1.09000 * 109.47470 * 90.00085 * 1 2 3 29 29 H 1.09002 * 109.47343 * 209.99906 * 1 2 3 30 30 H 1.09007 * 109.47258 * 330.00148 * 1 2 3 31 31 H 1.08998 * 109.46111 * 310.02340 * 7 5 3 32 32 H 1.09005 * 109.46207 * 69.99837 * 7 5 3 33 33 H 1.08997 * 109.69730 * 190.30787 * 8 7 5 34 34 H 1.09004 * 109.64656 * 69.76730 * 8 7 5 35 35 H 1.08002 * 125.61131 * 180.02562 * 11 10 9 36 36 H 1.08996 * 109.68573 * 136.13029 * 15 14 9 37 37 H 1.08997 * 109.67906 * 256.65431 * 15 14 9 38 38 H 1.09002 * 112.94199 * 168.40606 * 16 2 1 39 39 H 1.09002 * 113.76900 * 336.34302 * 17 16 2 40 40 H 1.08994 * 113.77308 * 107.74748 * 17 16 2 41 41 H 0.97005 * 119.99654 * 179.97438 * 22 21 19 42 42 H 1.08999 * 113.76789 * 221.05594 * 27 18 17 43 43 H 1.08996 * 113.87248 * 89.67253 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4722 -0.0006 6 1 0.7585 2.5305 0.8892 7 6 2.3803 3.6361 -0.0011 8 6 1.6318 4.9509 0.2491 9 6 0.4600 5.0201 -0.6984 10 7 -0.2627 6.0914 -1.0368 11 6 -1.1882 5.7329 -1.8880 12 7 -1.0812 4.4029 -2.1129 13 1 -1.6415 3.8700 -2.6986 14 6 -0.0362 3.9554 -1.3643 15 6 0.5039 2.5534 -1.2534 16 6 2.1974 -1.2687 0.0006 17 6 1.5285 -2.3709 -0.8407 18 7 1.8681 -3.2837 0.2681 19 6 2.0736 -4.6336 0.3713 20 1 2.3188 -5.0710 1.3279 21 6 1.9677 -5.4398 -0.7538 22 7 1.6704 -4.9065 -1.9198 23 14 2.2488 -7.2812 -0.6132 24 1 2.5687 -7.6269 0.7951 25 1 1.0210 -8.0029 -1.0340 26 1 3.3807 -7.6774 -1.4891 27 6 1.8971 -2.1573 1.2213 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 3.1187 3.4831 0.7860 32 1 2.8835 3.6833 -0.9669 33 1 2.2994 5.7936 0.0694 34 1 1.2737 4.9787 1.2783 35 1 -1.9202 6.3895 -2.3347 36 1 -0.3221 1.8474 -1.1674 37 1 1.0977 2.3179 -2.1366 38 1 3.2614 -1.1452 -0.2012 39 1 0.4569 -2.2281 -0.9797 40 1 2.0532 -2.5940 -1.7696 41 1 1.5968 -5.4699 -2.7061 42 1 2.7161 -2.2098 1.9386 43 1 0.9346 -1.9504 1.6891 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044153563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:18 Heat of formation + Delta-G solvation = 57.818182 kcal Electronic energy + Delta-G solvation = -25059.425006 eV Core-core repulsion = 21527.416930 eV Total energy + Delta-G solvation = -3532.008076 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.19630 -41.40477 -39.48767 -37.11980 -35.98163 -34.20925 -33.82931 -30.99246 -30.25085 -29.37074 -27.95657 -26.60595 -25.66421 -24.61822 -23.54640 -22.43675 -21.27048 -20.10569 -19.66819 -18.85346 -18.67202 -18.14332 -17.34830 -16.84281 -16.54522 -16.21891 -15.75525 -15.42908 -15.28290 -14.90981 -14.72089 -14.49125 -14.32113 -13.82078 -13.72038 -13.55342 -13.26423 -13.17415 -12.97267 -12.84638 -12.77709 -12.60686 -12.47885 -12.15301 -11.93770 -11.88550 -11.86157 -11.54402 -10.89425 -10.86758 -10.75405 -10.65184 -9.53682 -9.06634 -8.95980 -7.93876 -5.27601 1.12642 1.45513 1.46951 1.57011 1.58528 1.96872 2.18982 2.30526 2.48140 3.25620 3.35535 3.45006 3.62731 3.79388 3.82997 3.84935 4.11599 4.19638 4.26370 4.32174 4.38352 4.43910 4.51926 4.56999 4.63662 4.66122 4.73693 4.80488 4.85608 4.94289 4.97930 5.11148 5.16691 5.19711 5.24298 5.33018 5.37309 5.47105 5.70848 5.83411 5.89466 6.49224 6.63501 6.89025 7.19067 7.19430 7.56669 8.50217 9.23165 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032374 B = 0.002940 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.677013 B = 9522.547108 C =10033.508074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.597 5.597 3 C 0.515 3.485 4 O -0.583 6.583 5 C -0.086 4.086 6 H 0.124 0.876 7 C -0.092 4.092 8 C -0.028 4.028 9 C -0.021 4.021 10 N -0.531 5.531 11 C 0.185 3.815 12 N -0.549 5.549 13 H 0.437 0.563 14 C -0.026 4.026 15 C -0.036 4.036 16 C 0.115 3.885 17 C 0.162 3.838 18 N -0.637 5.637 19 C -0.234 4.234 20 H 0.085 0.915 21 C -0.065 4.065 22 N -0.951 5.951 23 Si 0.980 3.020 24 H -0.266 1.266 25 H -0.289 1.289 26 H -0.293 1.293 27 C 0.114 3.886 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.056 0.944 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.245 0.755 36 H 0.110 0.890 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.249 0.751 42 H 0.048 0.952 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.762 20.352 0.984 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.328 5.328 3 C 0.305 3.695 4 O -0.463 6.463 5 C -0.107 4.107 6 H 0.142 0.858 7 C -0.131 4.131 8 C -0.066 4.066 9 C -0.150 4.150 10 N -0.251 5.251 11 C -0.098 4.098 12 N -0.153 5.153 13 H 0.278 0.722 14 C -0.143 4.143 15 C -0.074 4.074 16 C 0.010 3.990 17 C 0.036 3.964 18 N -0.364 5.364 19 C -0.363 4.363 20 H 0.103 0.897 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.190 1.190 25 H -0.216 1.216 26 H -0.220 1.220 27 C -0.012 4.012 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.123 0.877 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.261 0.739 36 H 0.128 0.872 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.983 20.838 1.207 22.724 hybrid contribution -0.178 -2.263 -0.897 2.441 sum -9.160 18.575 0.310 20.713 Atomic orbital electron populations 1.22216 0.77633 1.04410 1.03142 1.47980 1.08180 1.04786 1.71859 1.21142 0.87610 0.85931 0.74838 1.90673 1.16028 1.87884 1.51670 1.21243 0.97655 0.90702 1.01127 0.85800 1.21346 0.96815 0.92024 1.02899 1.19907 0.92321 0.97157 0.97209 1.20793 1.01206 0.89116 1.03899 1.69952 1.08165 1.31183 1.15754 1.25769 1.01317 0.83244 0.99458 1.42911 1.25910 1.10282 1.36165 0.72228 1.20814 0.94846 0.97374 1.01272 1.20192 0.99286 0.90780 0.97158 1.23262 0.96818 0.81380 0.97561 1.22489 0.96696 0.84680 0.92517 1.45978 1.81469 1.02331 1.06649 1.19408 1.40036 0.81732 0.95080 0.89745 1.25631 1.02375 1.02551 0.95218 1.70000 1.55591 1.35266 0.99123 0.84988 0.76854 0.79550 0.77782 1.19003 1.21612 1.22037 1.23080 0.99236 0.85460 0.93439 0.90937 0.91214 0.87721 0.90586 0.92488 0.90400 0.89645 0.73926 0.87160 0.90735 0.89136 0.94101 0.94398 0.94153 0.93381 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.36 7.38 127.77 0.94 2.30 16 2 N -0.60 -17.21 3.09 -828.34 -2.56 -19.77 16 3 C 0.52 14.84 7.06 87.66 0.62 15.46 16 4 O -0.58 -22.04 15.30 -3.03 -0.05 -22.08 16 5 C -0.09 -1.70 1.70 -11.37 -0.02 -1.72 16 6 H 0.12 1.94 7.38 -2.39 -0.02 1.92 16 7 C -0.09 -1.96 4.64 30.75 0.14 -1.82 16 8 C -0.03 -0.54 6.30 30.02 0.19 -0.35 16 9 C -0.02 -0.45 6.98 41.61 0.29 -0.16 16 10 N -0.53 -11.73 11.25 -187.89 -2.11 -13.85 16 11 C 0.19 2.57 13.05 180.10 2.35 4.92 16 12 N -0.55 -6.56 6.14 -186.45 -1.15 -7.70 16 13 H 0.44 2.18 8.96 -92.71 -0.83 1.35 16 14 C -0.03 -0.45 7.08 41.14 0.29 -0.16 16 15 C -0.04 -0.59 5.08 29.97 0.15 -0.44 16 16 C 0.12 4.45 4.40 46.75 0.21 4.65 16 17 C 0.16 7.48 6.93 86.48 0.60 8.08 16 18 N -0.64 -32.41 3.70 -717.39 -2.65 -35.07 16 19 C -0.23 -13.08 10.70 84.03 0.90 -12.18 16 20 H 0.08 4.53 7.83 -2.91 -0.02 4.50 16 21 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 22 N -0.95 -56.53 11.38 21.65 0.25 -56.28 16 23 Si 0.98 45.34 29.55 68.60 2.03 47.36 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 27 C 0.11 4.56 8.46 86.48 0.73 5.29 16 28 H 0.07 1.28 7.19 -2.39 -0.02 1.27 16 29 H 0.07 1.59 6.36 -2.39 -0.02 1.57 16 30 H 0.10 1.36 5.89 -2.38 -0.01 1.34 16 31 H 0.08 1.73 7.77 -2.39 -0.02 1.71 16 32 H 0.06 1.37 8.12 -2.38 -0.02 1.35 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 35 H 0.24 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.11 1.35 4.94 -2.39 -0.01 1.34 16 37 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 38 H 0.09 3.99 7.24 -2.39 -0.02 3.97 16 39 H 0.04 1.79 6.71 -2.39 -0.02 1.78 16 40 H 0.04 2.03 7.15 -2.39 -0.02 2.01 16 41 H 0.25 14.36 8.31 -92.70 -0.77 13.59 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.06 2.16 6.98 -2.39 -0.02 2.14 16 Total: -1.00 -77.66 338.42 1.83 -75.83 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.21 Total: 10.85 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 7.86 Total: 20.70 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -8.23 Total: -132.67 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.66 1.83 -75.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044153563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.652 kcal (2) G-P(sol) polarization free energy of solvation -77.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds