Wall clock time and date at job start Fri Apr 10 2020 17:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34784 * 119.99803 * 2 1 4 4 O 1.21277 * 119.99933 * 5.46809 * 3 2 1 5 5 C 1.50699 * 119.99729 * 185.46285 * 3 2 1 6 6 H 1.09003 * 109.47946 * 306.70669 * 5 3 2 7 7 C 1.53132 * 109.47274 * 186.69780 * 5 3 2 8 8 C 1.53352 * 109.52698 * 169.98195 * 7 5 3 9 9 C 1.50874 * 108.40825 * 49.97973 * 8 7 5 10 10 N 1.33570 * 128.03047 * 163.25976 * 9 8 7 11 11 C 1.30754 * 109.14755 * 179.87484 * 10 9 8 12 12 N 1.35308 * 108.76591 * 0.43345 * 11 10 9 13 13 H 0.97005 * 126.50228 * 179.79263 * 12 11 10 14 14 C 1.35024 * 123.98822 * 343.37884 * 9 8 7 15 15 C 1.50654 * 124.45604 * 359.75321 * 14 9 8 16 16 C 1.46497 * 120.00499 * 180.02562 * 2 1 3 17 17 C 1.53943 * 113.73994 * 33.62517 * 16 2 1 18 18 N 1.47812 * 86.03689 * 222.08963 * 17 16 2 19 19 C 1.36940 * 134.45684 * 204.64590 * 18 17 16 20 20 H 1.07998 * 120.00355 * 179.86448 * 19 18 17 21 21 C 1.38812 * 119.99790 * 359.86237 * 19 18 17 22 22 N 1.31614 * 120.00175 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47396 * 89.99780 * 23 21 19 25 25 H 1.48495 * 109.47597 * 210.00525 * 23 21 19 26 26 H 1.48512 * 109.47093 * 330.00295 * 23 21 19 27 27 C 1.47579 * 91.05268 * 24.54890 * 18 17 16 28 28 H 1.09007 * 109.46881 * 92.64028 * 1 2 3 29 29 H 1.08997 * 109.47166 * 212.64427 * 1 2 3 30 30 H 1.08998 * 109.47537 * 332.64326 * 1 2 3 31 31 H 1.08997 * 109.46231 * 49.96506 * 7 5 3 32 32 H 1.08999 * 109.45867 * 290.00350 * 7 5 3 33 33 H 1.08995 * 109.67968 * 290.25674 * 8 7 5 34 34 H 1.08995 * 109.67388 * 169.70562 * 8 7 5 35 35 H 1.07998 * 125.62207 * 180.28091 * 11 10 9 36 36 H 1.08997 * 109.68397 * 103.37505 * 15 14 9 37 37 H 1.09004 * 109.68341 * 223.92647 * 15 14 9 38 38 H 1.08999 * 112.94767 * 165.21877 * 16 2 1 39 39 H 1.09007 * 113.77214 * 336.35351 * 17 16 2 40 40 H 1.09001 * 113.77240 * 107.74889 * 17 16 2 41 41 H 0.97000 * 120.00294 * 179.97438 * 22 21 19 42 42 H 1.08997 * 113.76842 * 221.15237 * 27 18 17 43 43 H 1.09004 * 113.76886 * 89.75431 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5366 2.2152 0.1001 5 6 3.6407 1.1702 -0.1242 6 1 4.0697 0.5182 0.6367 7 6 4.1662 2.5955 0.0695 8 6 5.6944 2.5659 0.1934 9 6 6.2497 1.7558 -0.9519 10 7 7.5058 1.7247 -1.4048 11 6 7.5783 0.8932 -2.4113 12 7 6.3497 0.3724 -2.6350 13 1 6.1113 -0.2693 -3.3223 14 6 5.5126 0.9152 -1.7090 15 6 4.0398 0.6637 -1.5160 16 6 2.1976 -1.2686 -0.0006 17 6 1.4914 -2.3918 -0.7814 18 7 1.8828 -3.2754 0.3370 19 6 2.0941 -4.6222 0.4665 20 1 2.3850 -5.0338 1.4216 21 6 1.9342 -5.4584 -0.6299 22 7 1.5801 -4.9568 -1.7941 23 14 2.2230 -7.2955 -0.4535 24 1 0.9518 -7.9622 -0.0731 25 1 2.7040 -7.8473 -1.7455 26 1 3.2429 -7.5375 0.5985 27 6 1.9570 -2.1237 1.2568 28 1 -0.3633 -0.0473 -1.0266 29 1 -0.3633 -0.8653 0.5543 30 1 -0.3634 0.9127 0.4722 31 1 3.7365 3.0208 0.9764 32 1 3.8829 3.2065 -0.7875 33 1 5.9771 2.1050 1.1398 34 1 6.0859 3.5821 0.1479 35 1 8.4711 0.6621 -2.9733 36 1 3.4730 1.1988 -2.2778 37 1 3.8371 -0.4048 -1.5898 38 1 3.2505 -1.1512 -0.2566 39 1 0.4143 -2.2520 -0.8746 40 1 1.9729 -2.6390 -1.7275 41 1 1.4688 -5.5410 -2.5603 42 1 2.8097 -2.1574 1.9350 43 1 1.0171 -1.9050 1.7636 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044153564.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:22 Heat of formation + Delta-G solvation = 79.141975 kcal Electronic energy + Delta-G solvation = -25573.936923 eV Core-core repulsion = 22042.853515 eV Total energy + Delta-G solvation = -3531.083407 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.32079 -40.15027 -37.98327 -36.17889 -34.24156 -33.17789 -31.97295 -30.20043 -29.35112 -27.72764 -26.74786 -24.96020 -24.09724 -23.30382 -22.44268 -21.54715 -20.04678 -19.19705 -18.34948 -17.71089 -17.27027 -16.77494 -15.69293 -15.58258 -15.16943 -14.86203 -14.62612 -14.18426 -13.95145 -13.82868 -13.74568 -13.29805 -13.13061 -12.63265 -12.43605 -12.13001 -11.91449 -11.72409 -11.58961 -11.56293 -11.32238 -11.06085 -10.96118 -10.92150 -10.80014 -10.43393 -10.17638 -9.93092 -9.85676 -9.69263 -9.47583 -8.92987 -8.22106 -8.16925 -7.04734 -5.91592 -3.24580 1.99173 2.71919 3.07487 3.10835 3.25247 3.31287 3.37129 3.37518 4.30068 4.37163 4.55795 4.73950 4.75898 5.01090 5.05419 5.15273 5.19956 5.23494 5.31598 5.38048 5.47340 5.51450 5.66945 5.70208 5.72250 5.84050 5.88129 5.96538 6.00780 6.07190 6.14264 6.25102 6.29497 6.33060 6.41661 6.72360 6.78049 7.01563 7.06595 7.33683 7.35992 7.71583 7.82147 8.03924 8.38181 8.89900 9.56146 10.41483 11.25592 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.013679 B = 0.004519 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.376527 B = 6195.215485 C = 7663.333833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.598 5.598 3 C 0.519 3.481 4 O -0.550 6.550 5 C -0.099 4.099 6 H 0.101 0.899 7 C -0.096 4.096 8 C -0.033 4.033 9 C 0.002 3.998 10 N -0.488 5.488 11 C 0.174 3.826 12 N -0.558 5.558 13 H 0.422 0.578 14 C -0.018 4.018 15 C -0.040 4.040 16 C 0.073 3.927 17 C 0.158 3.842 18 N -0.606 5.606 19 C -0.224 4.224 20 H 0.082 0.918 21 C -0.005 4.005 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.107 3.893 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.207 0.793 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.114 0.886 39 H 0.036 0.964 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.048 0.952 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.266 11.869 -0.993 13.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.329 5.329 3 C 0.307 3.693 4 O -0.428 6.428 5 C -0.121 4.121 6 H 0.120 0.880 7 C -0.134 4.134 8 C -0.071 4.071 9 C -0.128 4.128 10 N -0.207 5.207 11 C -0.108 4.108 12 N -0.160 5.160 13 H 0.260 0.740 14 C -0.134 4.134 15 C -0.078 4.078 16 C -0.031 4.031 17 C 0.032 3.968 18 N -0.333 5.333 19 C -0.351 4.351 20 H 0.100 0.900 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.743 3.257 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.205 1.205 27 C -0.020 4.020 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.224 0.776 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.632 12.547 -0.713 14.210 hybrid contribution -0.658 -2.190 -0.778 2.416 sum 5.974 10.357 -1.491 12.049 Atomic orbital electron populations 1.21601 0.79510 1.02847 1.01783 1.48017 1.07004 1.06156 1.71754 1.20471 0.89501 0.83371 0.75964 1.90648 1.70293 1.31440 1.50424 1.21280 0.92549 0.99952 0.98322 0.88047 1.21418 0.93842 0.94447 1.03705 1.19962 0.93874 0.98929 0.94357 1.20529 0.89594 1.01771 1.00861 1.69953 1.20679 1.19370 1.10674 1.24994 0.88914 0.97643 0.99287 1.42951 1.09366 1.36165 1.27556 0.74013 1.20844 0.94418 1.02364 0.95808 1.20167 0.88309 1.02822 0.96537 1.24323 0.97424 0.81136 1.00260 1.22645 0.96526 0.83527 0.94089 1.45753 1.79574 1.01905 1.06068 1.19002 1.39947 0.80153 0.96007 0.90012 1.24779 1.01554 0.98227 0.95607 1.69796 1.52903 1.34060 1.00078 0.86110 0.77922 0.84694 0.76980 1.21487 1.21573 1.20509 1.22991 0.98574 0.87030 0.93436 0.92758 0.90922 0.90876 0.90137 0.90999 0.90539 0.90224 0.77645 0.89890 0.88984 0.86823 0.94670 0.90541 0.93519 0.93363 0.94391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.24 9.07 59.85 0.54 1.78 16 2 N -0.60 -9.17 3.09 -175.75 -0.54 -9.71 16 3 C 0.52 7.85 6.94 -10.98 -0.08 7.77 16 4 O -0.55 -9.65 15.42 5.56 0.09 -9.56 16 5 C -0.10 -1.26 1.65 -91.50 -0.15 -1.41 16 6 H 0.10 1.27 7.47 -51.93 -0.39 0.88 16 7 C -0.10 -1.13 4.58 -26.48 -0.12 -1.25 16 8 C -0.03 -0.38 6.30 -27.62 -0.17 -0.55 16 9 C 0.00 0.03 6.98 -82.89 -0.58 -0.55 16 10 N -0.49 -6.78 11.25 -10.74 -0.12 -6.90 16 11 C 0.17 1.87 13.05 -89.92 -1.17 0.70 16 12 N -0.56 -5.81 6.15 -10.28 -0.06 -5.87 16 13 H 0.42 3.23 8.96 -40.82 -0.37 2.87 16 14 C -0.02 -0.22 7.08 -81.85 -0.58 -0.80 16 15 C -0.04 -0.49 5.20 -27.70 -0.14 -0.63 16 16 C 0.07 1.22 3.61 -70.15 -0.25 0.97 16 17 C 0.16 3.35 6.92 -2.84 -0.02 3.33 16 18 N -0.61 -14.38 3.70 -177.88 -0.66 -15.04 16 19 C -0.22 -5.92 10.70 -15.06 -0.16 -6.08 16 20 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 21 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 22 N -0.92 -25.72 11.39 55.49 0.63 -25.08 16 23 Si 0.91 21.15 29.55 -169.99 -5.02 16.12 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 C 0.11 2.02 8.48 -2.97 -0.03 1.99 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 1.07 6.51 -51.93 -0.34 0.73 16 30 H 0.07 1.04 7.28 -51.93 -0.38 0.66 16 31 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 32 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.21 1.35 8.06 -52.49 -0.42 0.92 16 36 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 37 H 0.09 1.18 5.70 -51.93 -0.30 0.88 16 38 H 0.11 1.81 4.37 -51.93 -0.23 1.58 16 39 H 0.04 0.76 6.61 -51.92 -0.34 0.42 16 40 H 0.08 1.79 7.16 -51.93 -0.37 1.42 16 41 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.04 0.71 7.16 -51.93 -0.37 0.34 16 LS Contribution 340.03 15.07 5.12 5.12 Total: -1.00 -32.68 340.03 -9.57 -42.25 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.99 Total: 3.63 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -3.01 Total: 5.04 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -0.75 Total: -62.61 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.68 -9.57 -42.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044153564.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.391 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds