Wall clock time and date at job start Fri Apr 10 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 119.99971 * 2 1 4 4 O 1.21282 * 119.99701 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99743 * 0.02562 * 3 2 1 6 6 H 1.09000 * 109.42306 * 59.88782 * 5 3 2 7 7 C 1.53034 * 109.42441 * 179.71321 * 5 3 2 8 8 C 1.53378 * 109.72378 * 191.80592 * 7 5 3 9 9 C 1.50882 * 108.19458 * 309.45642 * 8 7 5 10 10 C 1.34577 * 128.32859 * 196.96320 * 9 8 7 11 11 N 1.35199 * 107.61838 * 179.97438 * 10 9 8 12 12 H 0.97001 * 126.00610 * 179.97438 * 11 10 9 13 13 N 1.40318 * 107.99252 * 359.67425 * 11 10 9 14 14 C 1.30132 * 108.12285 * 0.22965 * 13 11 10 15 15 C 1.50946 * 128.28328 * 179.83194 * 14 13 11 16 16 C 1.46507 * 120.00110 * 180.02562 * 2 1 3 17 17 C 1.53945 * 113.74037 * 38.73757 * 16 2 1 18 18 N 1.47812 * 86.03276 * 222.08438 * 17 16 2 19 19 C 1.36941 * 134.45304 * 204.64201 * 18 17 16 20 20 H 1.08000 * 119.99657 * 179.87128 * 19 18 17 21 21 C 1.38809 * 120.00216 * 359.87342 * 19 18 17 22 22 N 1.31615 * 119.99748 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00241 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47343 * 59.99349 * 23 21 19 25 25 H 1.48498 * 109.47579 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47009 * 300.00003 * 23 21 19 27 27 C 1.47582 * 91.05366 * 24.55143 * 18 17 16 28 28 H 1.09003 * 109.47289 * 89.99936 * 1 2 3 29 29 H 1.09007 * 109.47111 * 209.99789 * 1 2 3 30 30 H 1.09001 * 109.47098 * 329.99565 * 1 2 3 31 31 H 1.08999 * 109.42716 * 311.88714 * 7 5 3 32 32 H 1.09005 * 109.42490 * 71.77961 * 7 5 3 33 33 H 1.09008 * 109.71830 * 69.12964 * 8 7 5 34 34 H 1.08998 * 109.72105 * 189.73494 * 8 7 5 35 35 H 1.08002 * 126.19062 * 359.80518 * 10 9 8 36 36 H 1.09002 * 109.71552 * 316.45660 * 15 14 13 37 37 H 1.08997 * 109.71963 * 77.10368 * 15 14 13 38 38 H 1.09004 * 112.94005 * 170.33178 * 16 2 1 39 39 H 1.08999 * 113.76807 * 336.34926 * 17 16 2 40 40 H 1.08996 * 113.76530 * 107.75109 * 17 16 2 41 41 H 0.97001 * 120.00022 * 180.02562 * 22 21 19 42 42 H 1.09000 * 113.76639 * 221.15061 * 27 18 17 43 43 H 1.08997 * 113.76643 * 89.75437 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.7578 2.5281 0.8901 7 6 2.3807 3.6347 0.0077 8 6 1.6427 4.9462 0.3037 9 6 0.4618 5.0436 -0.6303 10 6 -0.2674 6.1305 -0.9433 11 7 -1.2224 5.7443 -1.8189 12 1 -1.8955 6.3175 -2.2181 13 7 -1.0646 4.3701 -2.0543 14 6 -0.0584 3.9507 -1.3436 15 6 0.5030 2.5525 -1.2511 16 6 2.1975 -1.2688 -0.0006 17 6 1.5555 -2.3547 -0.8829 18 7 1.8611 -3.2880 0.2219 19 6 2.0639 -4.6396 0.3071 20 1 2.2809 -5.0938 1.2626 21 6 1.9906 -5.4258 -0.8345 22 7 1.7257 -4.8723 -1.9988 23 14 2.2680 -7.2694 -0.7183 24 1 1.2585 -7.8655 0.1932 25 1 2.1355 -7.8760 -2.0673 26 1 3.6301 -7.5327 -0.1883 27 6 1.8621 -2.1786 1.1951 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.1348 3.4616 0.7754 32 1 2.8645 3.7036 -0.9667 33 1 1.2954 4.9477 1.3370 34 1 2.3126 5.7903 0.1399 35 1 -0.1185 7.1299 -0.5618 36 1 -0.3124 1.8333 -1.1730 37 1 1.1008 2.3369 -2.1366 38 1 3.2669 -1.1418 -0.1691 39 1 0.4887 -2.2090 -1.0525 40 1 2.1091 -2.5604 -1.7990 41 1 1.6741 -5.4217 -2.7965 42 1 2.6600 -2.2439 1.9349 43 1 0.8856 -1.9811 1.6372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044321363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:48 Heat of formation + Delta-G solvation = 98.590266 kcal Electronic energy + Delta-G solvation = -25004.948640 eV Core-core repulsion = 21474.708573 eV Total energy + Delta-G solvation = -3530.240066 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.69777 -39.99996 -37.83449 -36.05918 -34.51044 -32.41120 -31.92284 -30.74493 -28.72693 -27.59325 -26.74780 -25.13688 -24.78923 -23.41145 -21.98793 -21.23426 -19.73034 -18.95192 -18.41305 -17.84582 -16.98871 -16.63808 -15.97809 -15.43220 -15.14991 -14.78819 -14.56301 -14.20204 -13.87767 -13.76244 -13.61040 -13.13744 -12.98409 -12.69293 -12.41815 -12.07829 -11.91082 -11.81381 -11.51081 -11.38593 -11.28116 -11.26032 -10.98809 -10.85998 -10.68872 -10.39931 -10.20128 -10.07064 -9.57033 -9.53837 -9.34891 -8.79061 -8.63023 -8.09771 -6.89757 -5.77283 -3.10127 1.68784 2.53177 2.60372 2.91431 3.31095 3.41547 3.45334 3.46430 4.21612 4.46406 4.49921 4.66938 4.75964 4.93911 5.05497 5.18243 5.22251 5.25952 5.37289 5.41376 5.45130 5.48228 5.52451 5.63528 5.75318 5.80663 5.81418 5.92135 6.01619 6.08775 6.13800 6.20279 6.26150 6.45846 6.47725 6.60606 6.82160 7.06384 7.21362 7.36626 7.47741 7.53448 7.80912 7.96672 8.49437 9.03598 9.69807 10.57065 11.39821 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.002927 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.727187 B = 9564.161806 C =10059.035824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.598 5.598 3 C 0.516 3.484 4 O -0.542 6.542 5 C -0.100 4.100 6 H 0.099 0.901 7 C -0.098 4.098 8 C -0.041 4.041 9 C -0.235 4.235 10 C 0.058 3.942 11 N -0.487 5.487 12 H 0.438 0.562 13 N -0.287 5.287 14 C 0.089 3.911 15 C -0.041 4.041 16 C 0.090 3.910 17 C 0.157 3.843 18 N -0.607 5.607 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.108 3.892 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.175 0.825 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.046 0.954 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.785 23.877 3.433 24.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.330 5.330 3 C 0.303 3.697 4 O -0.420 6.420 5 C -0.122 4.122 6 H 0.117 0.883 7 C -0.136 4.136 8 C -0.079 4.079 9 C -0.246 4.246 10 C -0.088 4.088 11 N -0.196 5.196 12 H 0.282 0.718 13 N -0.109 5.109 14 C -0.080 4.080 15 C -0.080 4.080 16 C -0.013 4.013 17 C 0.031 3.969 18 N -0.333 5.333 19 C -0.351 4.351 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.019 4.019 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.192 0.808 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.133 0.867 39 H 0.050 0.950 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -6.019 23.195 2.476 24.091 hybrid contribution -0.011 -0.404 0.343 0.530 sum -6.030 22.792 2.818 23.744 Atomic orbital electron populations 1.21958 0.80143 1.02951 1.01970 1.48036 1.06783 1.06274 1.71902 1.20474 0.87940 0.85078 0.76212 1.90675 1.13886 1.87312 1.50118 1.21301 0.97777 0.93552 0.99559 0.88321 1.21386 0.96885 0.91686 1.03670 1.20034 0.92989 0.97950 0.96914 1.20194 1.04104 0.92399 1.07930 1.22057 0.91802 0.99939 0.95008 1.46341 1.28005 1.07702 1.37504 0.71839 1.77056 1.20242 0.89956 1.23622 1.22269 0.93684 0.96854 0.95176 1.20319 0.99138 0.90268 0.98253 1.24025 0.98056 0.79899 0.99349 1.22662 0.96872 0.83511 0.93872 1.45700 1.81987 1.02174 1.03453 1.18943 1.41591 0.80285 0.94288 0.90140 1.24796 1.01938 0.98231 0.95366 1.69803 1.54489 1.34395 0.98022 0.86174 0.78091 0.84676 0.76645 1.21179 1.21532 1.21005 1.22968 0.97990 0.87375 0.93568 0.92110 0.90366 0.91400 0.90180 0.91132 0.91165 0.90925 0.80810 0.88346 0.89113 0.86650 0.95023 0.90557 0.93510 0.93549 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 7.38 59.85 0.44 1.36 16 2 N -0.60 -9.49 3.09 -175.75 -0.54 -10.03 16 3 C 0.52 7.97 7.06 -10.99 -0.08 7.90 16 4 O -0.54 -10.35 15.24 5.56 0.08 -10.26 16 5 C -0.10 -1.14 1.66 -91.58 -0.15 -1.29 16 6 H 0.10 0.98 7.35 -51.93 -0.38 0.60 16 7 C -0.10 -1.05 4.65 -26.52 -0.12 -1.17 16 8 C -0.04 -0.34 6.28 -27.60 -0.17 -0.51 16 9 C -0.23 -2.25 5.89 -104.98 -0.62 -2.87 16 10 C 0.06 0.43 11.95 -17.36 -0.21 0.22 16 11 N -0.49 -4.06 7.37 30.35 0.22 -3.83 16 12 H 0.44 2.17 8.96 -182.43 -1.64 0.54 16 13 N -0.29 -3.43 12.68 33.75 0.43 -3.00 16 14 C 0.09 1.02 7.10 -82.34 -0.58 0.43 16 15 C -0.04 -0.46 5.10 -27.58 -0.14 -0.60 16 16 C 0.09 1.79 4.40 -70.15 -0.31 1.49 16 17 C 0.16 3.68 6.97 -2.84 -0.02 3.66 16 18 N -0.61 -15.64 3.70 -177.91 -0.66 -16.30 16 19 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 20 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.31 11.39 55.49 0.63 -26.68 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 27 C 0.11 2.25 8.46 -2.97 -0.03 2.23 16 28 H 0.06 0.73 7.17 -51.93 -0.37 0.36 16 29 H 0.08 1.07 6.35 -51.92 -0.33 0.74 16 30 H 0.07 0.67 5.90 -51.93 -0.31 0.36 16 31 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 32 H 0.07 0.83 8.10 -51.93 -0.42 0.41 16 33 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 36 H 0.10 1.04 4.88 -51.93 -0.25 0.78 16 37 H 0.09 1.10 8.12 -51.93 -0.42 0.67 16 38 H 0.12 2.51 7.22 -51.93 -0.37 2.14 16 39 H 0.03 0.73 6.83 -51.93 -0.35 0.37 16 40 H 0.08 2.02 7.17 -51.93 -0.37 1.65 16 41 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.68 6.84 -51.93 -0.36 0.32 16 LS Contribution 338.65 15.07 5.10 5.10 Total: -1.00 -34.83 338.65 -9.21 -44.04 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.21 Total: -0.33 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -2.25 Total: 4.10 kcal Atomic # 7 Polarization: -59.92 SS G_CDS: 0.08 Total: -59.84 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.83 -9.21 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044321363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.631 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds