Wall clock time and date at job start Fri Apr 10 2020 17:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34781 * 119.99971 * 2 1 4 4 O 1.21282 * 119.99701 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99743 * 0.02562 * 3 2 1 6 6 H 1.09000 * 109.42306 * 59.88782 * 5 3 2 7 7 C 1.53034 * 109.42441 * 179.71321 * 5 3 2 8 8 C 1.53378 * 109.72378 * 191.80592 * 7 5 3 9 9 C 1.50882 * 108.19458 * 309.45642 * 8 7 5 10 10 C 1.34577 * 128.32859 * 196.96320 * 9 8 7 11 11 N 1.35199 * 107.61838 * 179.97438 * 10 9 8 12 12 H 0.97001 * 126.00610 * 179.97438 * 11 10 9 13 13 N 1.40318 * 107.99252 * 359.67425 * 11 10 9 14 14 C 1.30132 * 108.12285 * 0.22965 * 13 11 10 15 15 C 1.50946 * 128.28328 * 179.83194 * 14 13 11 16 16 C 1.46507 * 120.00110 * 180.02562 * 2 1 3 17 17 C 1.53945 * 113.74037 * 38.73757 * 16 2 1 18 18 N 1.47812 * 86.03276 * 222.08438 * 17 16 2 19 19 C 1.36941 * 134.45304 * 204.64201 * 18 17 16 20 20 H 1.08000 * 119.99657 * 179.87128 * 19 18 17 21 21 C 1.38809 * 120.00216 * 359.87342 * 19 18 17 22 22 N 1.31615 * 119.99748 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00241 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47343 * 59.99349 * 23 21 19 25 25 H 1.48498 * 109.47579 * 179.97438 * 23 21 19 26 26 H 1.48508 * 109.47009 * 300.00003 * 23 21 19 27 27 C 1.47582 * 91.05366 * 24.55143 * 18 17 16 28 28 H 1.09003 * 109.47289 * 89.99936 * 1 2 3 29 29 H 1.09007 * 109.47111 * 209.99789 * 1 2 3 30 30 H 1.09001 * 109.47098 * 329.99565 * 1 2 3 31 31 H 1.08999 * 109.42716 * 311.88714 * 7 5 3 32 32 H 1.09005 * 109.42490 * 71.77961 * 7 5 3 33 33 H 1.09008 * 109.71830 * 69.12964 * 8 7 5 34 34 H 1.08998 * 109.72105 * 189.73494 * 8 7 5 35 35 H 1.08002 * 126.19062 * 359.80518 * 10 9 8 36 36 H 1.09002 * 109.71552 * 316.45660 * 15 14 13 37 37 H 1.08997 * 109.71963 * 77.10368 * 15 14 13 38 38 H 1.09004 * 112.94005 * 170.33178 * 16 2 1 39 39 H 1.08999 * 113.76807 * 336.34926 * 17 16 2 40 40 H 1.08996 * 113.76530 * 107.75109 * 17 16 2 41 41 H 0.97001 * 120.00022 * 180.02562 * 22 21 19 42 42 H 1.09000 * 113.76639 * 221.15061 * 27 18 17 43 43 H 1.08997 * 113.76643 * 89.75437 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 1 0.7578 2.5281 0.8901 7 6 2.3807 3.6347 0.0077 8 6 1.6427 4.9462 0.3037 9 6 0.4618 5.0436 -0.6303 10 6 -0.2674 6.1305 -0.9433 11 7 -1.2224 5.7443 -1.8189 12 1 -1.8955 6.3175 -2.2181 13 7 -1.0646 4.3701 -2.0543 14 6 -0.0584 3.9507 -1.3436 15 6 0.5030 2.5525 -1.2511 16 6 2.1975 -1.2688 -0.0006 17 6 1.5555 -2.3547 -0.8829 18 7 1.8611 -3.2880 0.2219 19 6 2.0639 -4.6396 0.3071 20 1 2.2809 -5.0938 1.2626 21 6 1.9906 -5.4258 -0.8345 22 7 1.7257 -4.8723 -1.9988 23 14 2.2680 -7.2694 -0.7183 24 1 1.2585 -7.8655 0.1932 25 1 2.1355 -7.8760 -2.0673 26 1 3.6301 -7.5327 -0.1883 27 6 1.8621 -2.1786 1.1951 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 3.1348 3.4616 0.7754 32 1 2.8645 3.7036 -0.9667 33 1 1.2954 4.9477 1.3370 34 1 2.3126 5.7903 0.1399 35 1 -0.1185 7.1299 -0.5618 36 1 -0.3124 1.8333 -1.1730 37 1 1.1008 2.3369 -2.1366 38 1 3.2669 -1.1418 -0.1691 39 1 0.4887 -2.2090 -1.0525 40 1 2.1091 -2.5604 -1.7990 41 1 1.6741 -5.4217 -2.7965 42 1 2.6600 -2.2439 1.9349 43 1 0.8856 -1.9811 1.6372 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044321363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:47 Heat of formation + Delta-G solvation = 74.674949 kcal Electronic energy + Delta-G solvation = -25005.985686 eV Core-core repulsion = 21474.708573 eV Total energy + Delta-G solvation = -3531.277112 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.43106 -41.30200 -39.43419 -37.05016 -35.94605 -34.04443 -33.04378 -31.61941 -29.73080 -29.22804 -27.95826 -26.60804 -26.24570 -24.84249 -23.17636 -21.91266 -21.12030 -19.97754 -19.69306 -18.85527 -18.52886 -17.95432 -17.37496 -16.82460 -16.45602 -16.05020 -15.73248 -15.59727 -15.15256 -14.71198 -14.48521 -14.46425 -14.08901 -13.76003 -13.67436 -13.49713 -13.25398 -13.14896 -12.93576 -12.81512 -12.76120 -12.56038 -12.26941 -12.15241 -12.04877 -11.96651 -11.76473 -11.52883 -11.16387 -10.86269 -10.67285 -10.31357 -9.52040 -9.27371 -8.95381 -7.92097 -5.26438 1.04084 1.45806 1.49685 1.55777 1.60088 1.82143 1.98678 2.10613 2.49494 3.26361 3.35303 3.44383 3.64619 3.84610 3.86314 3.98121 4.12572 4.23284 4.32973 4.38592 4.44492 4.50849 4.54765 4.63204 4.65946 4.72846 4.75085 4.87429 4.90005 4.93756 5.07990 5.12839 5.20432 5.24330 5.30954 5.32327 5.44324 5.47212 5.71520 5.75856 5.89696 6.50912 6.56045 6.78671 6.89056 7.21174 7.57884 8.51653 9.24711 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.032485 B = 0.002927 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.727187 B = 9564.161806 C =10059.035824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.598 5.598 3 C 0.514 3.486 4 O -0.583 6.583 5 C -0.085 4.085 6 H 0.124 0.876 7 C -0.097 4.097 8 C -0.030 4.030 9 C -0.258 4.258 10 C 0.077 3.923 11 N -0.479 5.479 12 H 0.451 0.549 13 N -0.327 5.327 14 C 0.073 3.927 15 C -0.037 4.037 16 C 0.115 3.885 17 C 0.161 3.839 18 N -0.637 5.637 19 C -0.237 4.237 20 H 0.086 0.914 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.982 3.018 24 H -0.275 1.275 25 H -0.294 1.294 26 H -0.277 1.277 27 C 0.116 3.884 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.218 0.782 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.038 0.962 40 H 0.037 0.963 41 H 0.249 0.751 42 H 0.051 0.949 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.030 26.101 5.078 27.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.329 5.329 3 C 0.304 3.696 4 O -0.462 6.462 5 C -0.106 4.106 6 H 0.142 0.858 7 C -0.135 4.135 8 C -0.068 4.068 9 C -0.269 4.269 10 C -0.069 4.069 11 N -0.189 5.189 12 H 0.298 0.702 13 N -0.151 5.151 14 C -0.095 4.095 15 C -0.076 4.076 16 C 0.010 3.990 17 C 0.034 3.966 18 N -0.364 5.364 19 C -0.365 4.365 20 H 0.104 0.896 21 C -0.259 4.259 22 N -0.601 5.601 23 Si 0.810 3.190 24 H -0.200 1.200 25 H -0.220 1.220 26 H -0.203 1.203 27 C -0.010 4.010 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.108 0.892 35 H 0.235 0.765 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.110 0.890 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.300 25.458 4.144 26.806 hybrid contribution 0.364 -0.970 -0.179 1.052 sum -6.936 24.488 3.964 25.758 Atomic orbital electron populations 1.22180 0.77793 1.04393 1.02869 1.47998 1.08075 1.04961 1.71866 1.21233 0.87656 0.86025 0.74724 1.90658 1.15919 1.87913 1.51759 1.21253 0.97723 0.90971 1.00687 0.85825 1.21371 0.96772 0.92946 1.02451 1.19986 0.92570 0.96706 0.97498 1.20424 1.05148 0.92507 1.08839 1.22696 0.89984 1.01119 0.93114 1.46399 1.28432 1.06746 1.37325 0.70226 1.76969 1.21190 0.92058 1.24854 1.22262 0.94140 0.97094 0.96003 1.20205 0.98913 0.91176 0.97283 1.23268 0.96838 0.81326 0.97597 1.22521 0.96770 0.84739 0.92527 1.46022 1.82348 1.02423 1.05638 1.19357 1.40775 0.81793 0.94582 0.89607 1.25667 1.02417 1.02728 0.95085 1.70001 1.56012 1.35642 0.98465 0.85103 0.78285 0.79269 0.76365 1.20035 1.22007 1.20299 1.23070 0.99257 0.85462 0.93238 0.91579 0.91042 0.87745 0.90987 0.92927 0.89559 0.89229 0.76526 0.87798 0.90893 0.88980 0.94419 0.94494 0.94166 0.93091 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.64 7.38 127.77 0.94 2.59 16 2 N -0.60 -18.71 3.09 -828.32 -2.56 -21.28 16 3 C 0.51 15.75 7.06 87.65 0.62 16.36 16 4 O -0.58 -22.68 15.24 -3.04 -0.05 -22.72 16 5 C -0.08 -1.81 1.66 -11.41 -0.02 -1.83 16 6 H 0.12 2.07 7.35 -2.39 -0.02 2.05 16 7 C -0.10 -1.96 4.65 30.73 0.14 -1.82 16 8 C -0.03 -0.40 6.28 30.03 0.19 -0.21 16 9 C -0.26 -4.19 5.89 -20.10 -0.12 -4.30 16 10 C 0.08 0.85 11.95 83.34 1.00 1.85 16 11 N -0.48 -6.67 7.37 -57.88 -0.43 -7.10 16 12 H 0.45 3.26 8.96 -213.18 -1.91 1.35 16 13 N -0.33 -7.35 12.68 -47.13 -0.60 -7.95 16 14 C 0.07 1.55 7.10 43.44 0.31 1.86 16 15 C -0.04 -0.79 5.10 30.04 0.15 -0.64 16 16 C 0.11 4.66 4.40 46.75 0.21 4.86 16 17 C 0.16 7.78 6.97 86.44 0.60 8.38 16 18 N -0.64 -33.38 3.70 -716.79 -2.65 -36.04 16 19 C -0.24 -13.51 10.70 84.03 0.90 -12.61 16 20 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 21 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 22 N -0.95 -58.27 11.39 21.65 0.25 -58.02 16 23 Si 0.98 46.24 29.55 68.60 2.03 48.26 16 24 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 26 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 27 C 0.12 4.77 8.46 86.49 0.73 5.50 16 28 H 0.07 1.52 7.17 -2.39 -0.02 1.50 16 29 H 0.07 1.83 6.35 -2.38 -0.02 1.81 16 30 H 0.10 1.73 5.90 -2.39 -0.01 1.71 16 31 H 0.07 1.57 7.69 -2.39 -0.02 1.55 16 32 H 0.05 1.23 8.10 -2.38 -0.02 1.21 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.22 0.37 8.06 -2.91 -0.02 0.35 16 36 H 0.10 2.06 4.88 -2.39 -0.01 2.05 16 37 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 38 H 0.09 4.19 7.22 -2.38 -0.02 4.17 16 39 H 0.04 1.77 6.83 -2.39 -0.02 1.75 16 40 H 0.04 2.06 7.17 -2.39 -0.02 2.04 16 41 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.06 2.23 6.84 -2.39 -0.02 2.22 16 Total: -1.00 -78.08 338.65 1.24 -76.84 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -0.86 Total: 11.35 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 6.12 Total: 16.66 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -5.99 Total: -130.39 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.05 Total: -22.72 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -78.08 1.24 -76.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044321363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.512 kcal (2) G-P(sol) polarization free energy of solvation -78.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds