Wall clock time and date at job start Fri Apr 10 2020 17:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99693 * 2 1 4 4 C 1.39189 * 120.00525 * 179.97438 * 2 1 3 5 5 C 1.39418 * 120.83562 * 185.27126 * 4 2 1 6 6 C 1.38225 * 119.26411 * 180.02562 * 5 4 2 7 7 N 1.31656 * 120.99797 * 359.72763 * 6 5 4 8 8 C 1.32828 * 121.81896 * 0.56666 * 7 6 5 9 9 C 1.48184 * 119.68419 * 179.70900 * 8 7 6 10 10 O 1.21516 * 120.00093 * 186.00417 * 9 8 7 11 11 N 1.34773 * 120.00556 * 6.00801 * 9 8 7 12 12 C 1.46509 * 119.99589 * 5.80767 * 11 9 8 13 13 C 1.46494 * 120.00802 * 185.80325 * 11 9 8 14 14 C 1.53500 * 114.20530 * 119.99627 * 13 11 9 15 15 N 1.47064 * 87.98103 * 87.52745 * 14 13 11 16 16 C 1.36944 * 136.05632 * 207.08278 * 15 14 13 17 17 H 1.08002 * 119.99512 * 354.94215 * 16 15 14 18 18 C 1.38814 * 120.00131 * 174.93522 * 16 15 14 19 19 N 1.31616 * 120.00005 * 184.35790 * 18 16 15 20 20 Si 1.86796 * 119.99904 * 4.36187 * 18 16 15 21 21 H 1.48498 * 109.47241 * 174.29178 * 20 18 16 22 22 H 1.48499 * 109.47071 * 294.29174 * 20 18 16 23 23 H 1.48508 * 109.47326 * 54.28922 * 20 18 16 24 24 C 1.47064 * 87.88812 * 27.34015 * 15 14 13 25 25 C 1.39029 * 120.62615 * 359.43057 * 8 7 6 26 26 H 1.08997 * 109.47195 * 270.00372 * 1 2 3 27 27 H 1.08997 * 109.47145 * 30.00741 * 1 2 3 28 28 H 1.09003 * 109.46751 * 150.00155 * 1 2 3 29 29 H 1.09002 * 109.46994 * 185.27314 * 3 2 1 30 30 H 1.09000 * 109.46894 * 305.26683 * 3 2 1 31 31 H 1.09002 * 109.47174 * 65.26865 * 3 2 1 32 32 H 1.08000 * 120.36802 * 0.02562 * 5 4 2 33 33 H 1.08001 * 119.50310 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46784 * 275.79537 * 12 11 9 35 35 H 1.08997 * 109.47026 * 35.79237 * 12 11 9 36 36 H 1.08998 * 109.47127 * 155.79404 * 12 11 9 37 37 H 1.09005 * 113.28108 * 346.93555 * 13 11 9 38 38 H 1.08993 * 113.46887 * 332.74377 * 14 13 11 39 39 H 1.09004 * 113.46669 * 202.29986 * 14 13 11 40 40 H 0.97003 * 119.99835 * 5.01099 * 19 18 16 41 41 H 1.09006 * 113.46473 * 87.44218 * 24 15 14 42 42 H 1.09002 * 113.46828 * 217.87650 * 24 15 14 43 43 H 1.08000 * 120.52342 * 180.29898 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1611 -1.2053 0.0005 5 6 3.5507 -1.2280 0.1105 6 6 4.2091 -2.4434 0.1071 7 7 3.5433 -3.5749 0.0070 8 6 2.2201 -3.6012 -0.1055 9 6 1.5192 -4.9017 -0.2216 10 8 0.3231 -4.9305 -0.4341 11 7 2.2083 -6.0526 -0.0914 12 6 3.6224 -6.0206 0.2903 13 6 1.5434 -7.3357 -0.3315 14 6 2.1689 -8.1672 -1.4601 15 7 3.0847 -8.7384 -0.4612 16 6 4.3453 -9.2735 -0.4712 17 1 4.8641 -9.4156 -1.4077 18 6 4.9561 -9.6331 0.7223 19 7 6.1987 -10.0670 0.7210 20 14 4.0145 -9.5014 2.3302 21 1 4.8327 -10.0706 3.4311 22 1 3.7227 -8.0740 2.6174 23 1 2.7396 -10.2550 2.2205 24 6 2.0487 -8.4880 0.5521 25 6 1.4859 -2.4206 -0.1096 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2654 1.0718 -0.0944 30 1 1.8652 1.8801 -0.8391 31 1 2.0068 1.7984 0.9334 32 1 4.1067 -0.3062 0.1975 33 1 5.2855 -2.4655 0.1916 34 1 4.2348 -5.8617 -0.5973 35 1 3.7895 -5.2079 0.9972 36 1 3.8949 -6.9681 0.7550 37 1 0.4577 -7.2550 -0.3849 38 1 2.6721 -7.5642 -2.2158 39 1 1.4851 -8.8989 -1.8904 40 1 6.7116 -10.0670 -0.1024 41 1 1.3332 -9.3043 0.6521 42 1 2.4496 -8.1584 1.5106 43 1 0.4097 -2.4442 -0.1963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044360845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:58 Heat of formation + Delta-G solvation = 116.625676 kcal Electronic energy + Delta-G solvation = -25280.126887 eV Core-core repulsion = 21750.668895 eV Total energy + Delta-G solvation = -3529.457992 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.77270 -39.57052 -37.93538 -37.04633 -34.11499 -32.32437 -31.53131 -31.27314 -28.77148 -28.09692 -26.21891 -25.64049 -25.21812 -24.33567 -22.49683 -21.86872 -20.22502 -18.66412 -17.72468 -17.39867 -17.05525 -16.19273 -16.08599 -15.61589 -15.33665 -15.10680 -14.80708 -14.57362 -14.16088 -13.94007 -13.69670 -13.40807 -13.19785 -12.98675 -12.88277 -12.50553 -12.48516 -12.44478 -11.78516 -11.51732 -11.28945 -11.21024 -10.83632 -10.78308 -10.55867 -10.29725 -9.95991 -9.23856 -9.22415 -9.13626 -9.02434 -8.82314 -8.04285 -7.89809 -7.10220 -6.27292 -3.19643 0.74524 1.37383 2.64934 2.95171 3.31162 3.39924 3.45972 3.65968 3.97438 4.29103 4.50328 4.54276 4.59893 4.77774 4.86035 4.90008 4.93185 5.05376 5.15861 5.20593 5.25562 5.31708 5.37204 5.44653 5.58445 5.71242 5.82375 5.87417 5.97118 6.10782 6.24581 6.29982 6.36799 6.43922 6.56166 6.66763 6.77149 6.96013 7.03501 7.11959 7.13922 7.83744 7.95968 8.26736 8.46587 9.00802 9.52414 10.38840 11.24241 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.003780 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.411944 B = 7405.616998 C = 7972.638580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.629 5.629 3 C 0.089 3.911 4 C 0.240 3.760 5 C -0.238 4.238 6 C 0.134 3.866 7 N -0.483 5.483 8 C 0.127 3.873 9 C 0.564 3.436 10 O -0.550 6.550 11 N -0.557 5.557 12 C 0.091 3.909 13 C 0.095 3.905 14 C 0.112 3.888 15 N -0.624 5.624 16 C -0.296 4.296 17 H 0.082 0.918 18 C -0.023 4.023 19 N -0.936 5.936 20 Si 1.067 2.933 21 H -0.296 1.296 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.081 3.919 25 C -0.190 4.190 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.057 0.943 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.261 0.739 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.018 23.314 -0.578 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.341 5.341 3 C -0.054 4.054 4 C 0.130 3.870 5 C -0.263 4.263 6 C -0.024 4.024 7 N -0.198 5.198 8 C -0.010 4.010 9 C 0.351 3.649 10 O -0.429 6.429 11 N -0.286 5.286 12 C -0.051 4.051 13 C -0.010 4.010 14 C -0.016 4.016 15 N -0.353 5.353 16 C -0.423 4.423 17 H 0.100 0.900 18 C -0.222 4.222 19 N -0.578 5.578 20 Si 0.900 3.100 21 H -0.223 1.223 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.045 4.045 25 C -0.216 4.216 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.125 0.875 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.937 22.215 0.931 23.964 hybrid contribution -0.461 1.070 -1.766 2.116 sum -9.398 23.285 -0.836 25.124 Atomic orbital electron populations 1.21724 0.78852 1.03176 1.01722 1.46237 1.05467 1.02948 1.79468 1.21744 0.97725 0.84609 1.01333 1.17951 0.91388 0.86003 0.91678 1.21831 0.92763 1.00442 1.11286 1.22678 1.00389 0.86734 0.92588 1.68333 1.07649 1.29320 1.14544 1.20894 0.89953 0.93222 0.96975 1.17950 0.86003 0.83156 0.77795 1.90712 1.13986 1.87084 1.51111 1.47306 1.12647 1.04150 1.64471 1.22256 0.78316 1.03437 1.01045 1.22561 0.96585 0.82837 0.99027 1.22759 0.91851 0.93557 0.93412 1.46228 1.11401 1.73636 1.04066 1.20135 0.87091 1.39367 0.95658 0.90029 1.25594 0.97476 0.98630 1.00464 1.70905 1.08303 1.48518 1.30095 0.83816 0.74239 0.75528 0.76386 1.22340 1.21747 1.21736 1.23262 0.91693 0.94188 0.95381 1.21541 1.01815 0.90323 1.07874 0.92896 0.91220 0.90715 0.90230 0.92250 0.92659 0.84683 0.82194 0.92422 0.90486 0.89318 0.87541 0.93296 0.93390 0.92907 0.92709 0.92200 0.83780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.62 10.37 59.85 0.62 1.24 16 2 N -0.63 -5.46 3.40 -187.36 -0.64 -6.10 16 3 C 0.09 0.50 10.61 59.85 0.63 1.14 16 4 C 0.24 2.70 6.56 -83.63 -0.55 2.15 16 5 C -0.24 -2.43 9.33 -39.15 -0.37 -2.79 16 6 C 0.13 1.59 11.17 -17.63 -0.20 1.40 16 7 N -0.48 -7.46 6.16 -9.89 -0.06 -7.52 16 8 C 0.13 2.05 6.56 -83.06 -0.55 1.51 16 9 C 0.56 10.54 7.65 -12.18 -0.09 10.45 16 10 O -0.55 -10.95 15.84 5.35 0.08 -10.86 16 11 N -0.56 -10.95 3.12 -174.54 -0.54 -11.49 16 12 C 0.09 1.84 8.29 59.85 0.50 2.34 16 13 C 0.10 1.86 4.71 -67.68 -0.32 1.54 16 14 C 0.11 2.31 8.31 -8.50 -0.07 2.24 16 15 N -0.62 -15.25 2.39 -184.62 -0.44 -15.69 16 16 C -0.30 -8.38 10.53 -15.05 -0.16 -8.54 16 17 H 0.08 2.46 8.05 -52.49 -0.42 2.04 16 18 C -0.02 -0.68 5.45 -17.43 -0.10 -0.77 16 19 N -0.94 -29.21 13.70 55.49 0.76 -28.45 16 20 Si 1.07 26.74 24.15 -169.99 -4.10 22.64 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.29 -6.76 5.81 56.52 0.33 -6.43 16 23 H -0.29 -6.91 6.70 56.52 0.38 -6.54 16 24 C 0.08 1.75 4.99 -8.37 -0.04 1.70 16 25 C -0.19 -2.59 8.83 -38.84 -0.34 -2.93 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 28 H 0.07 0.58 6.07 -51.93 -0.32 0.26 16 29 H 0.08 0.40 5.45 -51.93 -0.28 0.12 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.14 0.97 5.94 -52.49 -0.31 0.66 16 33 H 0.16 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.06 1.19 7.97 -51.93 -0.41 0.78 16 35 H 0.08 1.44 5.82 -51.93 -0.30 1.14 16 36 H 0.09 2.06 3.47 -51.93 -0.18 1.88 16 37 H 0.11 1.94 7.26 -51.93 -0.38 1.56 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.26 8.06 8.73 -40.82 -0.36 7.71 16 41 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 42 H 0.06 1.36 3.42 -51.93 -0.18 1.18 16 43 H 0.14 1.90 5.77 -52.49 -0.30 1.60 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -33.97 334.60 -6.63 -40.61 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -5.71 Total: 1.15 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -1.02 Total: 10.68 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -0.92 Total: -69.25 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 26.74 SS G_CDS: -4.10 Total: 22.64 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.97 -6.63 -40.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044360845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.232 kcal (2) G-P(sol) polarization free energy of solvation -33.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds