Wall clock time and date at job start Fri Apr 10 2020 17:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46504 * 119.99693 * 2 1 4 4 C 1.39189 * 120.00525 * 179.97438 * 2 1 3 5 5 C 1.39418 * 120.83562 * 185.27126 * 4 2 1 6 6 C 1.38225 * 119.26411 * 180.02562 * 5 4 2 7 7 N 1.31656 * 120.99797 * 359.72763 * 6 5 4 8 8 C 1.32828 * 121.81896 * 0.56666 * 7 6 5 9 9 C 1.48184 * 119.68419 * 179.70900 * 8 7 6 10 10 O 1.21516 * 120.00093 * 186.00417 * 9 8 7 11 11 N 1.34773 * 120.00556 * 6.00801 * 9 8 7 12 12 C 1.46509 * 119.99589 * 5.80767 * 11 9 8 13 13 C 1.46494 * 120.00802 * 185.80325 * 11 9 8 14 14 C 1.53500 * 114.20530 * 119.99627 * 13 11 9 15 15 N 1.47064 * 87.98103 * 87.52745 * 14 13 11 16 16 C 1.36944 * 136.05632 * 207.08278 * 15 14 13 17 17 H 1.08002 * 119.99512 * 354.94215 * 16 15 14 18 18 C 1.38814 * 120.00131 * 174.93522 * 16 15 14 19 19 N 1.31616 * 120.00005 * 184.35790 * 18 16 15 20 20 Si 1.86796 * 119.99904 * 4.36187 * 18 16 15 21 21 H 1.48498 * 109.47241 * 174.29178 * 20 18 16 22 22 H 1.48499 * 109.47071 * 294.29174 * 20 18 16 23 23 H 1.48508 * 109.47326 * 54.28922 * 20 18 16 24 24 C 1.47064 * 87.88812 * 27.34015 * 15 14 13 25 25 C 1.39029 * 120.62615 * 359.43057 * 8 7 6 26 26 H 1.08997 * 109.47195 * 270.00372 * 1 2 3 27 27 H 1.08997 * 109.47145 * 30.00741 * 1 2 3 28 28 H 1.09003 * 109.46751 * 150.00155 * 1 2 3 29 29 H 1.09002 * 109.46994 * 185.27314 * 3 2 1 30 30 H 1.09000 * 109.46894 * 305.26683 * 3 2 1 31 31 H 1.09002 * 109.47174 * 65.26865 * 3 2 1 32 32 H 1.08000 * 120.36802 * 0.02562 * 5 4 2 33 33 H 1.08001 * 119.50310 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46784 * 275.79537 * 12 11 9 35 35 H 1.08997 * 109.47026 * 35.79237 * 12 11 9 36 36 H 1.08998 * 109.47127 * 155.79404 * 12 11 9 37 37 H 1.09005 * 113.28108 * 346.93555 * 13 11 9 38 38 H 1.08993 * 113.46887 * 332.74377 * 14 13 11 39 39 H 1.09004 * 113.46669 * 202.29986 * 14 13 11 40 40 H 0.97003 * 119.99835 * 5.01099 * 19 18 16 41 41 H 1.09006 * 113.46473 * 87.44218 * 24 15 14 42 42 H 1.09002 * 113.46828 * 217.87650 * 24 15 14 43 43 H 1.08000 * 120.52342 * 180.29898 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1611 -1.2053 0.0005 5 6 3.5507 -1.2280 0.1105 6 6 4.2091 -2.4434 0.1071 7 7 3.5433 -3.5749 0.0070 8 6 2.2201 -3.6012 -0.1055 9 6 1.5192 -4.9017 -0.2216 10 8 0.3231 -4.9305 -0.4341 11 7 2.2083 -6.0526 -0.0914 12 6 3.6224 -6.0206 0.2903 13 6 1.5434 -7.3357 -0.3315 14 6 2.1689 -8.1672 -1.4601 15 7 3.0847 -8.7384 -0.4612 16 6 4.3453 -9.2735 -0.4712 17 1 4.8641 -9.4156 -1.4077 18 6 4.9561 -9.6331 0.7223 19 7 6.1987 -10.0670 0.7210 20 14 4.0145 -9.5014 2.3302 21 1 4.8327 -10.0706 3.4311 22 1 3.7227 -8.0740 2.6174 23 1 2.7396 -10.2550 2.2205 24 6 2.0487 -8.4880 0.5521 25 6 1.4859 -2.4206 -0.1096 26 1 -0.3633 0.0001 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 3.2654 1.0718 -0.0944 30 1 1.8652 1.8801 -0.8391 31 1 2.0068 1.7984 0.9334 32 1 4.1067 -0.3062 0.1975 33 1 5.2855 -2.4655 0.1916 34 1 4.2348 -5.8617 -0.5973 35 1 3.7895 -5.2079 0.9972 36 1 3.8949 -6.9681 0.7550 37 1 0.4577 -7.2550 -0.3849 38 1 2.6721 -7.5642 -2.2158 39 1 1.4851 -8.8989 -1.8904 40 1 6.7116 -10.0670 -0.1024 41 1 1.3332 -9.3043 0.6521 42 1 2.4496 -8.1584 1.5106 43 1 0.4097 -2.4442 -0.1963 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044360845.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:57 Heat of formation + Delta-G solvation = 93.457383 kcal Electronic energy + Delta-G solvation = -25281.131540 eV Core-core repulsion = 21750.668895 eV Total energy + Delta-G solvation = -3530.462645 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.96075 -40.92123 -39.41336 -37.89481 -35.70677 -34.41829 -32.53317 -32.17215 -30.12221 -29.24596 -27.77282 -26.97416 -26.46390 -25.60885 -23.89485 -23.05693 -21.63572 -20.23919 -19.45848 -18.64380 -18.30743 -17.63097 -17.18495 -16.71129 -16.63456 -16.10634 -15.99362 -15.81729 -15.65529 -15.22850 -15.06197 -14.97727 -14.56921 -14.30681 -14.02160 -13.45438 -13.41099 -13.27326 -13.19279 -13.02648 -12.82450 -12.60723 -12.42206 -12.23189 -12.14541 -11.59869 -11.38214 -11.24431 -11.06526 -10.98493 -10.24226 -10.14619 -9.58962 -9.14777 -8.64348 -8.58018 -5.42083 -0.30078 0.45845 1.39507 1.47902 1.66687 1.68801 1.80805 2.11133 2.54708 2.91103 2.96862 3.13120 3.24019 3.56920 3.69151 3.85540 4.10677 4.16444 4.18701 4.23501 4.33178 4.47449 4.50153 4.52669 4.58643 4.63408 4.71082 4.72269 4.74882 4.78958 4.85478 4.90737 4.96844 4.99252 5.01361 5.19941 5.27461 5.51337 5.64758 5.98366 6.12603 6.25863 6.36079 6.73896 6.83104 7.12887 7.35509 8.28939 8.96218 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.023836 B = 0.003780 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.411944 B = 7405.616998 C = 7972.638580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.628 5.628 3 C 0.081 3.919 4 C 0.239 3.761 5 C -0.222 4.222 6 C 0.127 3.873 7 N -0.516 5.516 8 C 0.099 3.901 9 C 0.565 3.435 10 O -0.567 6.567 11 N -0.568 5.568 12 C 0.111 3.889 13 C 0.109 3.891 14 C 0.113 3.887 15 N -0.648 5.648 16 C -0.278 4.278 17 H 0.049 0.951 18 C -0.075 4.075 19 N -0.972 5.972 20 Si 1.102 2.898 21 H -0.307 1.307 22 H -0.267 1.267 23 H -0.267 1.267 24 C 0.079 3.921 25 C -0.194 4.194 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.172 0.828 33 H 0.185 0.815 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.058 0.942 37 H 0.128 0.872 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.247 0.753 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.692 26.463 0.035 28.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.338 5.338 3 C -0.060 4.060 4 C 0.127 3.873 5 C -0.247 4.247 6 C -0.031 4.031 7 N -0.232 5.232 8 C -0.037 4.037 9 C 0.353 3.647 10 O -0.447 6.447 11 N -0.296 5.296 12 C -0.031 4.031 13 C 0.004 3.996 14 C -0.014 4.014 15 N -0.378 5.378 16 C -0.405 4.405 17 H 0.067 0.933 18 C -0.267 4.267 19 N -0.618 5.618 20 Si 0.929 3.071 21 H -0.235 1.235 22 H -0.194 1.194 23 H -0.193 1.193 24 C -0.046 4.046 25 C -0.220 4.220 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.081 0.919 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.189 0.811 33 H 0.202 0.798 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.146 0.854 38 H 0.058 0.942 39 H 0.092 0.908 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.675 25.428 1.509 27.619 hybrid contribution 0.010 0.313 -2.088 2.111 sum -10.665 25.740 -0.579 27.868 Atomic orbital electron populations 1.21865 0.78108 1.03831 1.02244 1.46556 1.06251 1.03007 1.78011 1.21997 0.97981 0.83325 1.02733 1.18070 0.92009 0.86265 0.90995 1.22157 0.92423 1.01214 1.08937 1.23133 1.01485 0.86474 0.92000 1.68142 1.07483 1.31480 1.16110 1.20573 0.90613 0.92479 1.00043 1.18375 0.85893 0.83758 0.76641 1.90681 1.14696 1.87523 1.51756 1.47375 1.12392 1.04618 1.65250 1.21977 0.78648 1.02071 1.00408 1.22452 0.97494 0.82376 0.97269 1.22944 0.91304 0.93926 0.93179 1.46186 1.11290 1.73570 1.06710 1.19915 0.88869 1.37497 0.94216 0.93335 1.26747 0.97475 0.98853 1.03616 1.71005 1.09690 1.51665 1.29394 0.83404 0.73952 0.76996 0.72707 1.23512 1.19398 1.19290 1.23439 0.90965 0.95532 0.94687 1.21537 1.01716 0.90685 1.08107 0.92426 0.88789 0.91878 0.89384 0.90726 0.91314 0.81117 0.79770 0.93887 0.89072 0.92387 0.85425 0.94221 0.90841 0.94429 0.90482 0.92870 0.84026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.37 127.77 1.32 2.26 16 2 N -0.63 -8.88 3.40 -746.69 -2.54 -11.42 16 3 C 0.08 0.58 10.61 127.77 1.36 1.94 16 4 C 0.24 4.78 6.56 38.55 0.25 5.04 16 5 C -0.22 -3.82 9.33 22.55 0.21 -3.61 16 6 C 0.13 2.74 11.17 84.72 0.95 3.69 16 7 N -0.52 -15.53 6.16 -185.22 -1.14 -16.68 16 8 C 0.10 3.16 6.56 41.83 0.27 3.43 16 9 C 0.56 20.84 7.65 86.89 0.66 21.51 16 10 O -0.57 -22.15 15.84 -3.77 -0.06 -22.20 16 11 N -0.57 -21.99 3.12 -824.43 -2.57 -24.56 16 12 C 0.11 4.52 8.29 127.77 1.06 5.58 16 13 C 0.11 4.12 4.71 45.55 0.21 4.34 16 14 C 0.11 4.56 8.31 83.18 0.69 5.25 16 15 N -0.65 -31.49 2.39 -738.00 -1.77 -33.26 16 16 C -0.28 -16.09 10.53 84.03 0.88 -15.21 16 17 H 0.05 3.07 8.05 -2.91 -0.02 3.05 16 18 C -0.07 -4.46 5.45 84.86 0.46 -4.00 16 19 N -0.97 -62.79 13.70 21.65 0.30 -62.50 16 20 Si 1.10 54.01 24.15 68.60 1.66 55.67 16 21 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 22 H -0.27 -12.02 5.81 99.48 0.58 -11.44 16 23 H -0.27 -11.98 6.70 99.48 0.67 -11.31 16 24 C 0.08 3.27 4.99 83.27 0.42 3.69 16 25 C -0.19 -5.07 8.83 22.75 0.20 -4.87 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.09 0.62 8.07 -2.39 -0.02 0.60 16 28 H 0.06 0.88 6.07 -2.39 -0.01 0.87 16 29 H 0.09 0.48 5.45 -2.39 -0.01 0.46 16 30 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.17 1.64 5.94 -2.91 -0.02 1.63 16 33 H 0.19 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.04 1.82 7.97 -2.39 -0.02 1.80 16 35 H 0.09 3.41 5.82 -2.39 -0.01 3.40 16 36 H 0.06 2.71 3.47 -2.39 -0.01 2.70 16 37 H 0.13 4.34 7.26 -2.38 -0.02 4.32 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 41 H 0.08 2.91 8.07 -2.38 -0.02 2.89 16 42 H 0.05 2.31 3.42 -2.39 -0.01 2.30 16 43 H 0.14 3.66 5.77 -2.91 -0.02 3.64 16 Total: -1.00 -75.82 334.60 3.67 -72.15 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 0.83 Total: 13.77 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 8.96 Total: 29.03 kcal Atomic # 7 Polarization: -140.70 SS G_CDS: -7.71 Total: -148.41 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.06 Total: -22.20 kcal Atomic # 14 Polarization: 54.01 SS G_CDS: 1.66 Total: 55.67 kcal Total: -75.82 3.67 -72.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044360845.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.608 kcal (2) G-P(sol) polarization free energy of solvation -75.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds