Wall clock time and date at job start Fri Apr 10 2020 17:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40087 * 126.04101 * 2 1 4 4 C 1.30829 * 108.20855 * 179.97438 * 3 2 1 5 5 C 1.39875 * 108.20298 * 359.97438 * 4 3 2 6 6 C 1.34946 * 126.03644 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.12502 * 0.04123 * 6 2 1 8 8 C 1.50695 * 109.47390 * 264.99718 * 7 6 2 9 9 O 1.21282 * 119.99865 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00298 * 180.02562 * 8 7 6 11 11 C 1.46664 * 125.34132 * 180.02562 * 10 8 7 12 12 C 1.53721 * 107.94587 * 180.52133 * 11 10 8 13 13 H 1.09003 * 112.56408 * 139.72145 * 12 11 10 14 14 C 1.53696 * 109.34320 * 266.25296 * 12 11 10 15 15 N 1.47166 * 107.73600 * 128.69325 * 14 12 11 16 16 C 1.36932 * 125.25611 * 180.36757 * 15 14 12 17 17 H 1.08000 * 119.99790 * 179.17847 * 16 15 14 18 18 C 1.38807 * 120.00239 * 359.17441 * 16 15 14 19 19 N 1.31621 * 119.99805 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47405 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47246 * 120.00290 * 20 18 16 23 23 H 1.48498 * 109.47098 * 239.99996 * 20 18 16 24 24 C 1.46751 * 109.41103 * 359.65405 * 15 14 12 25 25 C 1.53934 * 106.72066 * 342.40490 * 24 15 14 26 26 H 1.08998 * 113.01202 * 150.82987 * 25 24 15 27 27 C 1.46775 * 125.33540 * 359.69392 * 10 8 7 28 28 H 1.08995 * 109.47195 * 89.97299 * 1 2 3 29 29 H 1.08996 * 109.47070 * 209.97608 * 1 2 3 30 30 H 1.09003 * 109.47068 * 329.97665 * 1 2 3 31 31 H 1.08004 * 125.90147 * 180.02562 * 4 3 2 32 32 H 1.07999 * 126.04264 * 179.74054 * 5 4 3 33 33 H 1.09000 * 109.47330 * 25.00396 * 7 6 2 34 34 H 1.09001 * 109.46962 * 144.99943 * 7 6 2 35 35 H 1.09001 * 109.77238 * 300.14432 * 11 10 8 36 36 H 1.09001 * 109.77182 * 60.89817 * 11 10 8 37 37 H 1.09003 * 109.75973 * 247.19889 * 14 12 11 38 38 H 1.08999 * 109.75689 * 7.91148 * 14 12 11 39 39 H 0.96998 * 120.00256 * 180.02562 * 19 18 16 40 40 H 1.08995 * 110.01031 * 223.09156 * 24 15 14 41 41 H 1.09001 * 110.00763 * 101.72142 * 24 15 14 42 42 H 1.09003 * 110.02837 * 280.79486 * 27 10 8 43 43 H 1.08994 * 110.02700 * 42.21504 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0015 6 6 2.2589 -1.0912 0.0005 7 6 1.7972 -2.5258 0.0003 8 6 1.7605 -3.0419 1.4156 9 8 2.0774 -2.3162 2.3341 10 7 1.3753 -4.3100 1.6607 11 6 1.2961 -4.9313 2.9869 12 6 0.8269 -6.3835 2.8024 13 1 1.3506 -7.0788 3.4584 14 6 -0.7012 -6.4479 2.9540 15 7 -1.2385 -7.1578 1.7822 16 6 -2.5643 -7.4096 1.5500 17 1 -2.8662 -7.9282 0.6520 18 6 -3.5202 -6.9984 2.4686 19 7 -3.1522 -6.3660 3.5628 20 14 -5.3287 -7.3425 2.1521 21 1 -5.4773 -8.0620 0.8617 22 1 -5.8729 -8.1802 3.2510 23 1 -6.0737 -6.0593 2.0926 24 6 -0.1341 -7.5385 0.8939 25 6 1.0754 -6.6755 1.2962 26 1 2.0304 -7.1646 1.1046 27 6 0.9629 -5.2837 0.6428 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.4055 1.3710 0.0011 32 1 4.4210 -1.2964 -0.0018 33 1 0.7996 -2.5864 -0.4347 34 1 2.4876 -3.1295 -0.5888 35 1 2.2783 -4.9184 3.4594 36 1 0.5817 -4.3888 3.6061 37 1 -0.9590 -7.0053 3.8546 38 1 -1.1082 -5.4387 3.0162 39 1 -3.8201 -6.0790 4.2050 40 1 -0.4047 -7.3409 -0.1433 41 1 0.1017 -8.5947 1.0236 42 1 -0.0665 -5.0930 0.3391 43 1 1.6247 -5.2236 -0.2211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048788668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:39 Heat of formation + Delta-G solvation = 79.825360 kcal Electronic energy + Delta-G solvation = -25289.605989 eV Core-core repulsion = 21758.552215 eV Total energy + Delta-G solvation = -3531.053774 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.33077 -40.10654 -38.20427 -34.97843 -33.47899 -32.52527 -32.11354 -30.40375 -29.48852 -27.72256 -26.74339 -25.57043 -25.37108 -23.03015 -21.17863 -20.35007 -20.17148 -19.36131 -18.99871 -17.26208 -16.82837 -16.64175 -16.11721 -15.46284 -15.07229 -14.74993 -14.48363 -14.33630 -13.81942 -13.74986 -13.29267 -13.16303 -12.86166 -12.67261 -12.60785 -12.45769 -12.16334 -12.02631 -11.90610 -11.55864 -11.53073 -10.94674 -10.89378 -10.67098 -10.48809 -10.17651 -10.12215 -9.92444 -9.83798 -9.69733 -9.26119 -8.68360 -8.51626 -8.40145 -6.91660 -5.79743 -3.13869 1.78833 2.48494 2.70251 2.80120 3.24405 3.34021 3.39875 3.42420 4.35422 4.42480 4.52836 4.55592 4.77021 4.84508 5.04742 5.09315 5.13396 5.17843 5.22516 5.38959 5.43427 5.50879 5.58521 5.62091 5.63718 5.71039 5.79591 5.90725 6.09493 6.10832 6.21464 6.30149 6.46369 6.50446 6.55298 6.64481 6.73876 6.95489 7.48341 7.50325 7.67825 7.69301 7.74245 8.17726 8.26012 9.13533 9.74569 10.37831 11.31673 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.003685 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.930160 B = 7596.789405 C = 8380.655255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.365 5.365 3 N -0.299 5.299 4 C 0.045 3.955 5 C -0.260 4.260 6 C 0.108 3.892 7 C -0.077 4.077 8 C 0.527 3.473 9 O -0.535 6.535 10 N -0.606 5.606 11 C 0.121 3.879 12 C -0.123 4.123 13 H 0.091 0.909 14 C 0.185 3.815 15 N -0.604 5.604 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.006 4.006 19 N -0.920 5.920 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.146 3.854 25 C -0.111 4.111 26 H 0.090 0.910 27 C 0.109 3.891 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.182 0.818 32 H 0.145 0.855 33 H 0.105 0.895 34 H 0.119 0.881 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.047 0.953 38 H 0.050 0.950 39 H 0.252 0.748 40 H 0.037 0.963 41 H 0.022 0.978 42 H 0.079 0.921 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.751 5.901 -8.581 15.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.148 5.148 3 N -0.120 5.120 4 C -0.141 4.141 5 C -0.289 4.289 6 C -0.020 4.020 7 C -0.119 4.119 8 C 0.314 3.686 9 O -0.412 6.412 10 N -0.340 5.340 11 C -0.001 4.001 12 C -0.143 4.143 13 H 0.109 0.891 14 C 0.060 3.940 15 N -0.330 5.330 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.020 3.980 25 C -0.130 4.130 26 H 0.108 0.892 27 C -0.013 4.013 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.199 0.801 32 H 0.162 0.838 33 H 0.123 0.877 34 H 0.137 0.863 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.098 0.902 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.776 7.426 -7.995 15.336 hybrid contribution -0.526 -0.950 -0.054 1.087 sum 10.250 6.475 -8.049 14.553 Atomic orbital electron populations 1.21878 0.74382 1.04908 1.03223 1.48406 1.06483 1.03268 1.56621 1.77315 1.01873 1.07874 1.24946 1.23748 0.95185 0.94971 1.00162 1.21134 0.96013 0.95056 1.16723 1.20282 0.91396 0.88999 1.01360 1.20253 1.04662 0.90708 0.96230 1.19851 0.77698 0.80454 0.90555 1.90744 1.48584 1.55710 1.46163 1.48250 1.65370 1.11116 1.09254 1.21824 1.00742 0.93383 0.84151 1.23167 1.01144 0.94140 0.95864 0.89056 1.21209 0.84282 0.97683 0.90786 1.44361 1.01576 1.66378 1.20730 1.19074 0.80618 1.31730 1.04479 0.90319 1.24801 0.98141 1.00508 0.96831 1.69962 1.31938 1.43785 1.11062 0.86058 0.84932 0.77425 0.77402 1.20487 1.21712 1.21789 1.21148 0.87063 0.95393 0.94439 1.22933 0.99509 0.94820 0.95778 0.89199 1.22163 1.00611 0.87972 0.90599 0.90589 0.89499 0.89116 0.80119 0.83769 0.87704 0.86296 0.92243 0.90927 0.93520 0.93220 0.93723 0.94486 0.96080 0.90240 0.91503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.04 11.06 59.85 0.66 1.70 16 2 N -0.37 -5.06 4.01 -63.89 -0.26 -5.31 16 3 N -0.30 -4.39 12.58 30.63 0.39 -4.01 16 4 C 0.04 0.56 12.03 -17.37 -0.21 0.35 16 5 C -0.26 -3.32 10.72 -40.01 -0.43 -3.75 16 6 C 0.11 1.44 5.42 -82.26 -0.45 0.99 16 7 C -0.08 -0.88 4.83 -29.04 -0.14 -1.02 16 8 C 0.53 8.10 7.83 -10.99 -0.09 8.01 16 9 O -0.54 -10.34 16.34 5.56 0.09 -10.25 16 10 N -0.61 -9.22 3.31 -172.18 -0.57 -9.79 16 11 C 0.12 1.99 6.23 -3.58 -0.02 1.97 16 12 C -0.12 -2.08 4.01 -88.60 -0.36 -2.43 16 13 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 14 C 0.18 4.15 4.77 -3.32 -0.02 4.14 16 15 N -0.60 -14.14 3.39 -171.50 -0.58 -14.73 16 16 C -0.23 -6.05 10.25 -15.06 -0.15 -6.20 16 17 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 19 N -0.92 -26.02 10.25 55.49 0.57 -25.45 16 20 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C 0.15 2.65 6.41 -3.42 -0.02 2.62 16 25 C -0.11 -1.63 4.14 -88.24 -0.37 -1.99 16 26 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 27 C 0.11 1.49 5.87 -3.29 -0.02 1.47 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.92 7.54 -51.93 -0.39 0.53 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.18 1.61 8.06 -52.48 -0.42 1.18 16 32 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.10 1.03 7.49 -51.93 -0.39 0.64 16 34 H 0.12 1.02 7.88 -51.93 -0.41 0.61 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.35 7.44 -51.93 -0.39 0.96 16 37 H 0.05 1.19 7.40 -51.93 -0.38 0.81 16 38 H 0.05 1.26 6.58 -51.93 -0.34 0.92 16 39 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.04 0.64 7.97 -51.93 -0.41 0.22 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 1.25 7.76 -51.93 -0.40 0.85 16 43 H 0.07 0.68 7.61 -51.93 -0.40 0.29 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -33.80 348.59 -8.27 -42.08 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -6.44 Total: 0.30 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -1.70 Total: 5.61 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.45 Total: -59.28 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.80 -8.27 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048788668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.901 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds