Wall clock time and date at job start Fri Apr 10 2020 17:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40087 * 126.04101 * 2 1 4 4 C 1.30829 * 108.20855 * 179.97438 * 3 2 1 5 5 C 1.39875 * 108.20298 * 359.97438 * 4 3 2 6 6 C 1.34946 * 126.03644 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.12502 * 0.04123 * 6 2 1 8 8 C 1.50695 * 109.47390 * 264.99718 * 7 6 2 9 9 O 1.21282 * 119.99865 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00298 * 180.02562 * 8 7 6 11 11 C 1.46664 * 125.34132 * 180.02562 * 10 8 7 12 12 C 1.53721 * 107.94587 * 180.52133 * 11 10 8 13 13 H 1.09003 * 112.56408 * 139.72145 * 12 11 10 14 14 C 1.53696 * 109.34320 * 266.25296 * 12 11 10 15 15 N 1.47166 * 107.73600 * 128.69325 * 14 12 11 16 16 C 1.36932 * 125.25611 * 180.36757 * 15 14 12 17 17 H 1.08000 * 119.99790 * 179.17847 * 16 15 14 18 18 C 1.38807 * 120.00239 * 359.17441 * 16 15 14 19 19 N 1.31621 * 119.99805 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00160 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47405 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47246 * 120.00290 * 20 18 16 23 23 H 1.48498 * 109.47098 * 239.99996 * 20 18 16 24 24 C 1.46751 * 109.41103 * 359.65405 * 15 14 12 25 25 C 1.53934 * 106.72066 * 342.40490 * 24 15 14 26 26 H 1.08998 * 113.01202 * 150.82987 * 25 24 15 27 27 C 1.46775 * 125.33540 * 359.69392 * 10 8 7 28 28 H 1.08995 * 109.47195 * 89.97299 * 1 2 3 29 29 H 1.08996 * 109.47070 * 209.97608 * 1 2 3 30 30 H 1.09003 * 109.47068 * 329.97665 * 1 2 3 31 31 H 1.08004 * 125.90147 * 180.02562 * 4 3 2 32 32 H 1.07999 * 126.04264 * 179.74054 * 5 4 3 33 33 H 1.09000 * 109.47330 * 25.00396 * 7 6 2 34 34 H 1.09001 * 109.46962 * 144.99943 * 7 6 2 35 35 H 1.09001 * 109.77238 * 300.14432 * 11 10 8 36 36 H 1.09001 * 109.77182 * 60.89817 * 11 10 8 37 37 H 1.09003 * 109.75973 * 247.19889 * 14 12 11 38 38 H 1.08999 * 109.75689 * 7.91148 * 14 12 11 39 39 H 0.96998 * 120.00256 * 180.02562 * 19 18 16 40 40 H 1.08995 * 110.01031 * 223.09156 * 24 15 14 41 41 H 1.09001 * 110.00763 * 101.72142 * 24 15 14 42 42 H 1.09003 * 110.02837 * 280.79486 * 27 10 8 43 43 H 1.08994 * 110.02700 * 42.21504 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0015 6 6 2.2589 -1.0912 0.0005 7 6 1.7972 -2.5258 0.0003 8 6 1.7605 -3.0419 1.4156 9 8 2.0774 -2.3162 2.3341 10 7 1.3753 -4.3100 1.6607 11 6 1.2961 -4.9313 2.9869 12 6 0.8269 -6.3835 2.8024 13 1 1.3506 -7.0788 3.4584 14 6 -0.7012 -6.4479 2.9540 15 7 -1.2385 -7.1578 1.7822 16 6 -2.5643 -7.4096 1.5500 17 1 -2.8662 -7.9282 0.6520 18 6 -3.5202 -6.9984 2.4686 19 7 -3.1522 -6.3660 3.5628 20 14 -5.3287 -7.3425 2.1521 21 1 -5.4773 -8.0620 0.8617 22 1 -5.8729 -8.1802 3.2510 23 1 -6.0737 -6.0593 2.0926 24 6 -0.1341 -7.5385 0.8939 25 6 1.0754 -6.6755 1.2962 26 1 2.0304 -7.1646 1.1046 27 6 0.9629 -5.2837 0.6428 28 1 -0.3633 0.0005 -1.0276 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 4.4055 1.3710 0.0011 32 1 4.4210 -1.2964 -0.0018 33 1 0.7996 -2.5864 -0.4347 34 1 2.4876 -3.1295 -0.5888 35 1 2.2783 -4.9184 3.4594 36 1 0.5817 -4.3888 3.6061 37 1 -0.9590 -7.0053 3.8546 38 1 -1.1082 -5.4387 3.0162 39 1 -3.8201 -6.0790 4.2050 40 1 -0.4047 -7.3409 -0.1433 41 1 0.1017 -8.5947 1.0236 42 1 -0.0665 -5.0930 0.3391 43 1 1.6247 -5.2236 -0.2211 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048788668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:39 Heat of formation + Delta-G solvation = 57.251633 kcal Electronic energy + Delta-G solvation = -25290.584859 eV Core-core repulsion = 21758.552215 eV Total energy + Delta-G solvation = -3532.032644 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.29686 -41.36824 -39.55964 -36.54563 -34.43994 -34.10058 -33.27280 -31.80220 -31.05626 -28.83651 -27.62908 -27.08522 -26.95272 -24.50149 -22.11613 -21.85405 -21.37354 -20.71946 -20.08699 -18.85203 -18.21923 -17.66962 -17.41619 -16.67661 -16.42795 -16.01483 -15.92698 -15.48559 -15.29197 -14.79758 -14.65060 -14.37697 -14.25069 -13.70217 -13.61781 -13.57818 -13.36254 -13.32240 -13.24656 -13.05607 -12.87439 -12.74567 -12.65494 -11.93108 -11.86055 -11.83467 -11.63319 -11.48840 -11.32018 -11.09219 -10.69360 -10.24753 -9.65329 -9.46225 -8.84932 -7.83685 -5.17998 0.81640 1.46368 1.47209 1.54067 1.57051 1.60725 1.83842 2.14451 2.50642 3.32448 3.36132 3.43896 3.58944 3.67142 3.76671 3.89838 4.00928 4.05257 4.30897 4.32375 4.33939 4.35356 4.41738 4.56035 4.57829 4.63673 4.77414 4.77997 4.79513 4.88286 4.96422 5.09967 5.14357 5.20118 5.26002 5.44895 5.51516 5.65470 5.75757 5.79823 6.05276 6.22600 6.51232 6.74312 7.07907 7.12637 7.82675 8.43987 9.26451 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.018663 B = 0.003685 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.930160 B = 7596.789405 C = 8380.655255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.379 5.379 3 N -0.335 5.335 4 C 0.040 3.960 5 C -0.270 4.270 6 C 0.093 3.907 7 C -0.066 4.066 8 C 0.526 3.474 9 O -0.582 6.582 10 N -0.606 5.606 11 C 0.126 3.874 12 C -0.114 4.114 13 H 0.111 0.889 14 C 0.199 3.801 15 N -0.624 5.624 16 C -0.233 4.233 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.972 3.028 21 H -0.261 1.261 22 H -0.297 1.297 23 H -0.297 1.297 24 C 0.139 3.861 25 C -0.093 4.093 26 H 0.136 0.864 27 C 0.110 3.890 28 H 0.100 0.900 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.211 0.789 32 H 0.164 0.836 33 H 0.122 0.878 34 H 0.159 0.841 35 H 0.076 0.924 36 H 0.036 0.964 37 H 0.002 0.998 38 H 0.007 0.993 39 H 0.243 0.757 40 H 0.052 0.948 41 H 0.029 0.971 42 H 0.055 0.945 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.681 4.876 -11.334 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.161 5.161 3 N -0.157 5.157 4 C -0.144 4.144 5 C -0.299 4.299 6 C -0.036 4.036 7 C -0.107 4.107 8 C 0.315 3.685 9 O -0.462 6.462 10 N -0.339 5.339 11 C 0.003 3.997 12 C -0.133 4.133 13 H 0.129 0.871 14 C 0.073 3.927 15 N -0.351 5.351 16 C -0.362 4.362 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.802 3.198 21 H -0.185 1.185 22 H -0.225 1.225 23 H -0.225 1.225 24 C 0.014 3.986 25 C -0.112 4.112 26 H 0.154 0.846 27 C -0.012 4.012 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.108 0.892 31 H 0.228 0.772 32 H 0.182 0.818 33 H 0.140 0.860 34 H 0.176 0.824 35 H 0.094 0.906 36 H 0.055 0.945 37 H 0.020 0.980 38 H 0.025 0.975 39 H 0.052 0.948 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.074 0.926 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.719 6.366 -10.807 17.864 hybrid contribution -1.117 -0.657 0.812 1.529 sum 11.602 5.709 -9.996 16.344 Atomic orbital electron populations 1.22036 0.73442 1.04688 1.04718 1.48681 1.07318 1.03351 1.56800 1.77259 1.02953 1.09018 1.26444 1.24336 0.95482 0.95713 0.98917 1.21518 0.96630 0.95405 1.16335 1.20693 0.91811 0.89711 1.01351 1.20324 1.06715 0.89966 0.93703 1.20545 0.76366 0.79792 0.91768 1.90726 1.50713 1.56767 1.48037 1.48321 1.65009 1.11611 1.08958 1.21639 1.00443 0.92672 0.84978 1.22989 0.96727 0.94998 0.98616 0.87099 1.20832 0.88221 0.94422 0.89182 1.44660 1.02130 1.66284 1.22009 1.19492 0.82269 1.30251 1.04160 0.89477 1.25591 1.02036 1.01377 0.97053 1.70207 1.32425 1.45557 1.12038 0.85086 0.80341 0.76776 0.77626 1.18536 1.22466 1.22461 1.21400 0.86723 0.96336 0.94183 1.23002 0.99943 0.95092 0.93171 0.84598 1.22260 1.00636 0.86720 0.91545 0.88198 0.89904 0.89193 0.77233 0.81811 0.86008 0.82380 0.90614 0.94542 0.97990 0.97473 0.94808 0.92959 0.95272 0.92641 0.86313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.92 11.06 127.77 1.41 3.33 16 2 N -0.38 -10.15 4.01 -356.04 -1.43 -11.57 16 3 N -0.33 -9.63 12.58 -57.02 -0.72 -10.35 16 4 C 0.04 0.95 12.03 85.24 1.03 1.98 16 5 C -0.27 -6.31 10.72 21.99 0.24 -6.07 16 6 C 0.09 2.29 5.42 41.41 0.22 2.52 16 7 C -0.07 -1.30 4.83 29.10 0.14 -1.16 16 8 C 0.53 15.22 7.83 87.66 0.69 15.90 16 9 O -0.58 -22.34 16.34 -3.03 -0.05 -22.39 16 10 N -0.61 -17.18 3.31 -817.03 -2.71 -19.89 16 11 C 0.13 4.07 6.23 86.59 0.54 4.61 16 12 C -0.11 -3.69 4.01 -9.49 -0.04 -3.72 16 13 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 14 C 0.20 9.23 4.77 86.49 0.41 9.64 16 15 N -0.62 -29.21 3.39 -696.51 -2.36 -31.57 16 16 C -0.23 -12.23 10.25 84.03 0.86 -11.37 16 17 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 18 C -0.07 -3.75 5.48 84.86 0.47 -3.28 16 19 N -0.95 -56.58 10.25 21.65 0.22 -56.36 16 20 Si 0.97 44.64 29.55 68.60 2.03 46.66 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 24 C 0.14 4.63 6.41 86.65 0.56 5.18 16 25 C -0.09 -2.36 4.14 -9.25 -0.04 -2.40 16 26 H 0.14 2.39 8.14 -2.39 -0.02 2.37 16 27 C 0.11 2.59 5.87 86.72 0.51 3.10 16 28 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.75 7.54 -2.39 -0.02 1.74 16 30 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.21 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 33 H 0.12 2.01 7.49 -2.39 -0.02 1.99 16 34 H 0.16 1.85 7.88 -2.39 -0.02 1.83 16 35 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.04 1.43 7.44 -2.39 -0.02 1.41 16 37 H 0.00 0.10 7.40 -2.39 -0.02 0.08 16 38 H 0.01 0.39 6.58 -2.39 -0.02 0.37 16 39 H 0.24 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.05 1.61 7.97 -2.39 -0.02 1.59 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 1.61 7.76 -2.39 -0.02 1.59 16 43 H 0.12 1.64 7.61 -2.39 -0.02 1.63 16 Total: -1.00 -78.53 348.59 2.98 -75.55 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.00 Total: 11.67 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 6.99 Total: 18.25 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -6.99 Total: -129.74 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.39 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -78.53 2.98 -75.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048788668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.800 kcal (2) G-P(sol) polarization free energy of solvation -78.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds