Wall clock time and date at job start Fri Apr 10 2020 17:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46489 * 1 3 3 C 1.46504 * 120.00051 * 2 1 4 4 C 1.50693 * 109.47172 * 274.99833 * 3 2 1 5 5 H 1.08000 * 119.99929 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00099 * 179.97438 * 4 3 2 7 7 N 1.31521 * 120.00341 * 180.02562 * 6 4 3 8 8 Si 1.86797 * 120.00093 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47205 * 89.99726 * 8 6 4 10 10 H 1.48495 * 109.47322 * 209.99992 * 8 6 4 11 11 H 1.48502 * 109.47122 * 329.99662 * 8 6 4 12 12 S 1.65606 * 120.00129 * 180.02562 * 2 1 3 13 13 O 1.42105 * 106.40008 * 336.45751 * 12 2 1 14 14 O 1.42098 * 106.40370 * 203.53936 * 12 2 1 15 15 N 1.65595 * 107.22013 * 89.99663 * 12 2 1 16 16 C 1.46925 * 120.63264 * 269.72636 * 15 12 2 17 17 C 1.53624 * 108.54476 * 126.36850 * 16 15 12 18 18 C 1.53036 * 109.24529 * 54.85320 * 17 16 15 19 19 C 1.50693 * 109.46177 * 178.49156 * 18 17 16 20 20 N 1.34786 * 119.99873 * 300.06938 * 19 18 17 21 21 O 1.21277 * 120.00360 * 120.07236 * 19 18 17 22 22 C 1.53034 * 109.53843 * 298.51529 * 18 17 16 23 23 C 1.46933 * 120.62849 * 90.00117 * 15 12 2 24 24 H 1.08998 * 109.47302 * 269.99851 * 1 2 3 25 25 H 1.09005 * 109.47350 * 29.99843 * 1 2 3 26 26 H 1.08996 * 109.47412 * 149.99906 * 1 2 3 27 27 H 1.08996 * 109.47155 * 35.00396 * 3 2 1 28 28 H 1.09007 * 109.47086 * 154.99904 * 3 2 1 29 29 H 0.96998 * 120.00080 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.58173 * 246.20142 * 16 15 12 31 31 H 1.08999 * 109.58418 * 6.62073 * 16 15 12 32 32 H 1.08999 * 109.63032 * 294.86137 * 17 16 15 33 33 H 1.09007 * 109.42932 * 174.72603 * 17 16 15 34 34 H 1.09002 * 109.44800 * 58.52297 * 18 17 16 35 35 H 0.96994 * 119.99667 * 359.97438 * 20 19 18 36 36 H 0.97001 * 119.99406 * 180.02562 * 20 19 18 37 37 H 1.09000 * 109.49815 * 301.41151 * 22 18 17 38 38 H 1.09001 * 109.49818 * 181.31498 * 22 18 17 39 39 H 1.08994 * 109.58440 * 353.37472 * 23 15 12 40 40 H 1.08995 * 109.58385 * 113.65925 * 23 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7657 -1.4153 5 1 1.9282 1.1938 -2.2331 6 6 2.9997 2.9508 -1.6663 7 7 3.1249 3.3848 -2.9015 8 14 3.7138 3.9402 -0.2519 9 1 5.1111 3.5054 0.0006 10 1 3.6999 5.3836 -0.6008 11 1 2.8980 3.7183 0.9690 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4068 0.5434 14 8 3.5759 -1.1571 0.5439 15 7 2.5380 -1.8581 -1.5826 16 6 1.5568 -2.6868 -2.2961 17 6 1.1556 -1.9634 -3.5906 18 6 2.4142 -1.6428 -4.4001 19 6 2.0235 -0.9660 -5.6886 20 7 1.2225 -1.6008 -6.5673 21 8 2.4298 0.1498 -5.9350 22 6 3.3206 -0.7130 -3.5903 23 6 3.7437 -1.4175 -2.2974 24 1 -0.3634 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6501 2.0043 0.5895 28 1 3.1857 1.1177 0.4344 29 1 3.5884 4.2184 -3.0780 30 1 2.0007 -3.6529 -2.5366 31 1 0.6770 -2.8325 -1.6694 32 1 0.6345 -1.0378 -3.3464 33 1 0.4998 -2.6068 -4.1772 34 1 2.9478 -2.5668 -4.6226 35 1 0.8979 -2.4933 -6.3705 36 1 0.9714 -1.1652 -7.3969 37 1 2.7791 0.2009 -3.3460 38 1 4.2057 -0.4663 -4.1766 39 1 4.3071 -0.7254 -1.6717 40 1 4.3634 -2.2819 -2.5359 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028082966.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:38 Heat of formation + Delta-G solvation = -112.717294 kcal Electronic energy + Delta-G solvation = -25425.645175 eV Core-core repulsion = 21788.134320 eV Total energy + Delta-G solvation = -3637.510855 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.70141 -37.38940 -36.79689 -35.59477 -35.30194 -33.58343 -32.39652 -32.01277 -30.69738 -28.35369 -25.30017 -25.03360 -23.04766 -21.99491 -21.08105 -19.64462 -18.42263 -17.67068 -17.04297 -16.81617 -16.67742 -16.36384 -15.76617 -14.71086 -14.61573 -14.21965 -14.02424 -13.89324 -13.63953 -13.31402 -12.99170 -12.93627 -12.50927 -12.40967 -12.22476 -11.98051 -11.82501 -11.43150 -11.35095 -11.21689 -11.15990 -10.92665 -10.66934 -10.41798 -10.35019 -10.30222 -10.15569 -9.54346 -9.49789 -9.34403 -8.68932 -8.56448 -8.03902 -6.05808 -4.08841 1.18673 2.93959 3.30031 3.35455 3.39617 3.41466 3.71225 4.06273 4.40561 4.79484 4.84384 4.91643 5.05683 5.24179 5.31700 5.40992 5.50334 5.56800 5.62377 5.76442 5.84526 5.97570 6.00818 6.10734 6.24315 6.26608 6.36651 6.46577 6.62776 6.84903 6.92780 6.96660 7.14576 7.20030 7.42332 7.49532 7.62449 8.47981 8.53734 8.97015 9.52109 11.03848 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011695 B = 0.008385 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.611828 B = 3338.605736 C = 4938.116132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.992 5.992 3 C 0.214 3.786 4 C -0.547 4.547 5 H 0.089 0.911 6 C 0.080 3.920 7 N -0.880 5.880 8 Si 0.864 3.136 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.265 1.265 12 S 2.788 3.212 13 O -0.998 6.998 14 O -0.979 6.979 15 N -1.003 6.003 16 C 0.128 3.872 17 C -0.124 4.124 18 C -0.100 4.100 19 C 0.514 3.486 20 N -0.865 5.865 21 O -0.518 6.518 22 C -0.126 4.126 23 C 0.133 3.867 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.264 0.736 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.396 0.604 36 H 0.396 0.604 37 H 0.117 0.883 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.039 -13.141 -3.270 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.832 5.832 3 C 0.090 3.910 4 C -0.586 4.586 5 H 0.107 0.893 6 C -0.125 4.125 7 N -0.517 5.517 8 Si 0.690 3.310 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.190 1.190 12 S 2.796 3.204 13 O -0.982 6.982 14 O -0.963 6.963 15 N -0.841 5.841 16 C 0.002 3.998 17 C -0.164 4.164 18 C -0.122 4.122 19 C 0.299 3.701 20 N -0.429 5.429 21 O -0.392 6.392 22 C -0.165 4.165 23 C 0.008 3.992 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.224 0.776 36 H 0.226 0.774 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.116 0.884 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.299 -12.719 -2.573 13.670 hybrid contribution -0.059 0.643 -0.179 0.670 sum -4.359 -12.076 -2.752 13.130 Atomic orbital electron populations 1.21229 0.79807 1.02372 1.00578 1.57458 1.14279 1.22781 1.88726 1.19612 0.91886 0.80785 0.98704 1.21488 1.37701 1.07647 0.91715 0.89323 1.24841 0.95381 0.97088 0.95142 1.69930 1.41612 1.21690 1.18474 0.87051 0.80555 0.79830 0.83515 1.19840 1.21204 1.19019 1.01717 0.72998 0.72610 0.73029 1.93531 1.67386 1.60144 1.77117 1.93557 1.40802 1.85293 1.76682 1.58162 1.29783 1.64518 1.31675 1.21367 0.91914 0.93178 0.93371 1.21984 0.96259 1.01881 0.96258 1.21252 0.98324 1.00057 0.92524 1.20808 0.77790 0.86129 0.85417 1.43944 1.54083 1.21298 1.23598 1.90854 1.52949 1.18661 1.76721 1.21971 1.00142 1.00063 0.94277 1.21338 0.85178 0.98309 0.94373 0.93747 0.90594 0.92804 0.94798 0.94133 0.92572 0.91419 0.89522 0.90184 0.91210 0.89279 0.77609 0.77379 0.86519 0.90848 0.88409 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.75 10.31 59.84 0.62 2.37 16 2 N -0.99 -19.60 3.23 -123.06 -0.40 -19.99 16 3 C 0.21 4.91 4.48 -5.19 -0.02 4.89 16 4 C -0.55 -14.06 9.54 -34.44 -0.33 -14.39 16 5 H 0.09 2.39 5.76 -52.49 -0.30 2.09 16 6 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 7 N -0.88 -25.72 13.96 55.43 0.77 -24.95 16 8 Si 0.86 20.80 27.47 -169.99 -4.67 16.13 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 12 S 2.79 53.47 6.07 -107.50 -0.65 52.82 16 13 O -1.00 -19.41 15.92 -57.17 -0.91 -20.32 16 14 O -0.98 -21.64 15.41 -57.17 -0.88 -22.52 16 15 N -1.00 -16.30 3.34 -113.27 -0.38 -16.68 16 16 C 0.13 1.60 6.41 -3.49 -0.02 1.58 16 17 C -0.12 -1.49 5.28 -26.39 -0.14 -1.63 16 18 C -0.10 -1.35 2.48 -91.74 -0.23 -1.58 16 19 C 0.51 7.78 7.43 -10.98 -0.08 7.70 16 20 N -0.86 -8.53 8.76 31.22 0.27 -8.26 16 21 O -0.52 -10.98 16.82 5.56 0.09 -10.89 16 22 C -0.13 -2.23 4.65 -26.61 -0.12 -2.35 16 23 C 0.13 2.21 6.38 -3.71 -0.02 2.19 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 26 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 27 H 0.03 0.77 7.17 -51.93 -0.37 0.40 16 28 H 0.04 0.98 6.34 -51.92 -0.33 0.65 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.05 7.12 -51.93 -0.37 0.68 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.58 7.52 -51.93 -0.39 0.19 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 2.50 8.23 -40.82 -0.34 2.16 16 36 H 0.40 3.61 8.93 -40.82 -0.36 3.25 16 37 H 0.12 2.63 5.29 -51.93 -0.27 2.35 16 38 H 0.07 1.34 8.07 -51.93 -0.42 0.93 16 39 H 0.10 1.87 7.13 -51.93 -0.37 1.50 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 330.57 15.07 4.98 4.98 Total: -1.00 -34.83 330.57 -7.85 -42.68 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.63 Total: 6.14 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.45 Total: 0.86 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: 0.27 Total: -69.88 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -1.70 Total: -53.72 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.67 Total: 16.13 kcal Atomic # 16 Polarization: 53.47 SS G_CDS: -0.65 Total: 52.82 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.83 -7.85 -42.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028082966.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.038 kcal (2) G-P(sol) polarization free energy of solvation -34.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds