Wall clock time and date at job start Fri Apr 10 2020 17:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46505 * 120.00078 * 2 1 4 4 C 1.50698 * 109.46788 * 274.99771 * 3 2 1 5 5 H 1.07997 * 120.00535 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99504 * 179.97438 * 4 3 2 7 7 N 1.31507 * 119.99872 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 119.99638 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46992 * 60.00567 * 8 6 4 10 10 H 1.48498 * 109.46526 * 180.02562 * 8 6 4 11 11 H 1.48490 * 109.47372 * 300.00039 * 8 6 4 12 12 S 1.65607 * 119.99980 * 179.97438 * 2 1 3 13 13 O 1.42096 * 106.40087 * 156.45877 * 12 2 1 14 14 O 1.42099 * 106.39992 * 23.54164 * 12 2 1 15 15 N 1.65595 * 107.21745 * 270.00314 * 12 2 1 16 16 C 1.46495 * 120.00430 * 64.99895 * 15 12 2 17 17 H 1.09004 * 109.62994 * 334.60688 * 16 15 12 18 18 C 1.53061 * 109.63560 * 214.00200 * 16 15 12 19 19 C 1.51785 * 110.74291 * 155.38213 * 18 16 15 20 20 C 1.51784 * 113.81269 * 66.80676 * 19 18 16 21 21 C 1.52986 * 110.88114 * 292.99590 * 20 19 18 22 22 N 1.47195 * 108.66452 * 86.46512 * 21 20 19 23 23 C 1.33367 * 120.42887 * 288.04719 * 22 21 20 24 24 O 1.21279 * 119.89368 * 180.26716 * 23 22 21 25 25 H 1.08992 * 109.47321 * 269.99905 * 1 2 3 26 26 H 1.08996 * 109.47018 * 30.00086 * 1 2 3 27 27 H 1.09001 * 109.47234 * 149.99751 * 1 2 3 28 28 H 1.08997 * 109.46787 * 34.99721 * 3 2 1 29 29 H 1.08999 * 109.46837 * 154.99779 * 3 2 1 30 30 H 0.96997 * 119.99679 * 180.02562 * 7 6 4 31 31 H 0.97003 * 119.99661 * 244.99610 * 15 12 2 32 32 H 1.09005 * 109.22048 * 275.71079 * 18 16 15 33 33 H 1.08997 * 109.21886 * 35.10050 * 18 16 15 34 34 H 1.08997 * 108.61813 * 305.69018 * 19 18 16 35 35 H 1.09001 * 108.61793 * 187.92548 * 19 18 16 36 36 H 1.08998 * 109.19738 * 172.62736 * 20 19 18 37 37 H 1.09002 * 109.19192 * 53.35463 * 20 19 18 38 38 H 1.08999 * 109.60336 * 206.21618 * 21 20 19 39 39 H 1.08995 * 109.60771 * 326.54363 * 21 20 19 40 40 H 0.97001 * 119.78367 * 108.01664 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9282 1.1938 -2.2332 6 6 2.9998 2.9509 -1.6663 7 7 3.5025 3.6474 -0.6705 8 14 3.1776 3.5671 -3.4208 9 1 1.8310 3.7727 -4.0121 10 1 3.9202 4.8531 -3.4207 11 1 3.9234 2.5655 -4.2241 12 16 2.2930 -1.4342 0.0006 13 8 3.5759 -1.1571 -0.5439 14 8 1.4113 -2.4068 -0.5434 15 7 2.5380 -1.8580 1.5826 16 6 1.3946 -2.1768 2.4411 17 1 0.5028 -1.6758 2.0644 18 6 1.6821 -1.7169 3.8724 19 6 0.3889 -1.4646 4.6260 20 6 -0.4282 -2.7186 4.8782 21 6 -0.9640 -3.2935 3.5656 22 7 0.0581 -4.1815 2.9883 23 6 1.1697 -3.6742 2.4537 24 8 2.0032 -4.4146 1.9764 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6501 2.0043 0.5894 29 1 3.1857 1.1177 0.4343 30 1 3.9653 4.4813 -0.8470 31 1 3.4387 -1.8953 1.9408 32 1 2.2540 -2.4878 4.3890 33 1 2.2652 -0.7965 3.8432 34 1 -0.2174 -0.7640 4.0518 35 1 0.6290 -1.0069 5.5857 36 1 -1.2661 -2.4751 5.5314 37 1 0.2005 -3.4638 5.3657 38 1 -1.8742 -3.8610 3.7595 39 1 -1.1803 -2.4812 2.8718 40 1 -0.0775 -5.1420 2.9970 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045741278.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:42 Heat of formation + Delta-G solvation = -146.067930 kcal Electronic energy + Delta-G solvation = -24757.536075 eV Core-core repulsion = 21118.579028 eV Total energy + Delta-G solvation = -3638.957047 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.36252 -38.32523 -37.75613 -37.23496 -36.88989 -36.37413 -34.50134 -33.80587 -30.67033 -29.67110 -26.96520 -26.67515 -25.02950 -24.21951 -21.78355 -21.01424 -20.30539 -19.01223 -18.54294 -18.35838 -18.28456 -17.79016 -17.25482 -16.67025 -16.14041 -15.83097 -15.21005 -15.15797 -14.97111 -14.85325 -14.47242 -14.13400 -14.09020 -13.94096 -13.50090 -13.33982 -13.19845 -13.09100 -13.00982 -12.93620 -12.60163 -12.49697 -12.38327 -12.08623 -11.88134 -11.75968 -11.73808 -11.53209 -11.46617 -10.58397 -10.39552 -10.05109 -9.81458 -8.19719 -6.30914 -0.41764 1.39723 1.43707 1.50450 1.58707 1.96652 2.29659 2.41638 2.62536 3.11599 3.39952 3.43542 3.63412 3.75508 3.99723 4.05570 4.17482 4.22604 4.45905 4.57139 4.69192 4.73151 4.80426 4.87897 5.04622 5.08537 5.14862 5.21332 5.22782 5.31720 5.45071 5.49666 5.69684 5.80994 5.92315 6.02865 6.12362 6.23896 6.76570 7.23580 7.37662 8.87610 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.024713 B = 0.004491 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.717174 B = 6232.716212 C = 6637.049129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.997 5.997 3 C 0.272 3.728 4 C -0.553 4.553 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.921 5.921 8 Si 0.953 3.047 9 H -0.262 1.262 10 H -0.275 1.275 11 H -0.281 1.281 12 S 2.795 3.205 13 O -1.011 7.011 14 O -1.009 7.009 15 N -1.104 6.104 16 C 0.135 3.865 17 H 0.120 0.880 18 C -0.116 4.116 19 C -0.124 4.124 20 C -0.138 4.138 21 C 0.091 3.909 22 N -0.712 5.712 23 C 0.496 3.504 24 O -0.588 6.588 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.016 0.984 30 H 0.268 0.732 31 H 0.423 0.577 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.082 0.918 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.240 -9.874 16.156 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.840 5.840 3 C 0.149 3.851 4 C -0.592 4.592 5 H 0.068 0.932 6 C -0.185 4.185 7 N -0.561 5.561 8 Si 0.778 3.222 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.207 1.207 12 S 2.803 3.197 13 O -0.995 6.995 14 O -0.992 6.992 15 N -0.864 5.864 16 C 0.024 3.976 17 H 0.138 0.862 18 C -0.155 4.155 19 C -0.162 4.162 20 C -0.176 4.176 21 C -0.032 4.032 22 N -0.364 5.364 23 C 0.280 3.720 24 O -0.468 6.468 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.057 0.943 29 H 0.034 0.966 30 H 0.077 0.923 31 H 0.258 0.742 32 H 0.089 0.911 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.140 0.860 39 H 0.100 0.900 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -12.624 -10.347 15.108 22.241 hybrid contribution 0.879 0.118 -0.729 1.148 sum -11.746 -10.229 14.379 21.198 Atomic orbital electron populations 1.21714 0.77808 1.03835 1.02979 1.57462 1.15830 1.21573 1.89165 1.18659 0.90553 0.80042 0.95891 1.21821 1.36473 1.06631 0.94309 0.93218 1.25687 0.94748 0.96751 1.01266 1.69980 1.37735 1.15703 1.32687 0.85695 0.78869 0.77539 0.80145 1.18664 1.19988 1.20709 1.01321 0.72319 0.72662 0.73423 1.93566 1.43125 1.85547 1.77238 1.93506 1.67740 1.60203 1.77717 1.55699 1.15335 1.84314 1.31005 1.21159 0.89741 0.91610 0.95095 0.86237 1.21644 1.00758 1.02933 0.90209 1.21213 0.94518 0.98901 1.01568 1.21851 1.01231 0.97272 0.97270 1.22263 0.90853 0.94974 0.95090 1.45947 1.19469 1.11478 1.59534 1.21326 0.81877 0.92158 0.76631 1.90706 1.46256 1.62064 1.47819 0.89920 0.90502 0.91036 0.94331 0.96603 0.92326 0.74211 0.91147 0.89100 0.90213 0.89383 0.87445 0.91617 0.85989 0.89952 0.75715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.52 10.10 127.77 1.29 3.81 16 2 N -1.00 -40.55 3.23 -543.25 -1.75 -42.30 16 3 C 0.27 13.55 5.08 85.63 0.43 13.98 16 4 C -0.55 -31.35 9.38 25.60 0.24 -31.11 16 5 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 6 C 0.02 0.87 5.46 84.66 0.46 1.33 16 7 N -0.92 -53.52 13.29 21.45 0.28 -53.23 16 8 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 9 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 12 S 2.79 118.44 6.01 -56.49 -0.34 118.10 16 13 O -1.01 -52.75 17.11 -128.00 -2.19 -54.94 16 14 O -1.01 -45.18 16.50 -128.00 -2.11 -47.29 16 15 N -1.10 -35.96 5.04 -171.47 -0.86 -36.82 16 16 C 0.14 3.36 2.37 44.50 0.11 3.46 16 17 H 0.12 2.55 5.28 -2.38 -0.01 2.54 16 18 C -0.12 -2.01 5.24 30.22 0.16 -1.85 16 19 C -0.12 -1.25 5.27 29.79 0.16 -1.10 16 20 C -0.14 -0.98 5.74 30.19 0.17 -0.80 16 21 C 0.09 0.80 6.46 86.24 0.56 1.36 16 22 N -0.71 -12.59 5.27 -462.61 -2.44 -15.03 16 23 C 0.50 13.78 7.00 88.11 0.62 14.40 16 24 O -0.59 -22.47 17.31 -3.03 -0.05 -22.52 16 25 H 0.08 1.77 7.40 -2.39 -0.02 1.76 16 26 H 0.08 2.45 8.07 -2.39 -0.02 2.43 16 27 H 0.07 2.14 7.02 -2.39 -0.02 2.12 16 28 H 0.04 1.89 8.11 -2.39 -0.02 1.87 16 29 H 0.02 0.86 7.61 -2.39 -0.02 0.84 16 30 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 31 H 0.42 12.83 8.83 -96.75 -0.85 11.97 16 32 H 0.07 1.24 7.86 -2.38 -0.02 1.22 16 33 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 34 H 0.08 0.70 7.89 -2.39 -0.02 0.68 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 37 H 0.07 0.59 8.05 -2.39 -0.02 0.57 16 38 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 39 H 0.08 0.72 6.73 -2.39 -0.02 0.70 16 40 H 0.41 6.33 8.91 -92.71 -0.83 5.50 16 Total: -1.00 -83.52 337.10 -3.85 -87.37 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.61 Total: 16.45 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 4.20 Total: 3.49 kcal Atomic # 7 Polarization: -142.61 SS G_CDS: -4.77 Total: -147.38 kcal Atomic # 8 Polarization: -120.40 SS G_CDS: -4.35 Total: -124.75 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Atomic # 16 Polarization: 118.44 SS G_CDS: -0.34 Total: 118.10 kcal Total: -83.52 -3.85 -87.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045741278.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.701 kcal (2) G-P(sol) polarization free energy of solvation -83.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds