Wall clock time and date at job start Fri Apr 10 2020 17:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00108 * 2 1 4 4 C 1.50707 * 109.47440 * 275.55979 * 3 2 1 5 5 H 1.07997 * 119.99397 * 4.95099 * 4 3 2 6 6 C 1.37873 * 120.00390 * 184.95672 * 4 3 2 7 7 N 1.31508 * 119.99901 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99969 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47252 * 89.99711 * 8 6 4 10 10 H 1.48499 * 109.47298 * 209.99986 * 8 6 4 11 11 H 1.48502 * 109.46902 * 329.99934 * 8 6 4 12 12 S 1.65599 * 119.99783 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40256 * 159.52056 * 12 2 1 14 14 O 1.42092 * 106.40471 * 26.59396 * 12 2 1 15 15 N 1.65599 * 107.21583 * 273.05624 * 12 2 1 16 16 C 1.46499 * 120.00229 * 62.73797 * 15 12 2 17 17 C 1.52998 * 109.47660 * 164.42195 * 16 15 12 18 18 N 1.46497 * 109.47282 * 179.97438 * 17 16 15 19 19 C 1.34776 * 119.99634 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00603 * 359.97438 * 19 18 17 21 21 C 1.50709 * 119.99896 * 179.97438 * 19 18 17 22 22 C 1.52998 * 117.49601 * 248.62099 * 21 19 18 23 23 C 1.52992 * 59.99943 * 252.50903 * 22 21 19 24 24 H 1.09009 * 109.46645 * 269.99836 * 1 2 3 25 25 H 1.08995 * 109.46996 * 29.99362 * 1 2 3 26 26 H 1.08991 * 109.47190 * 150.00407 * 1 2 3 27 27 H 1.09006 * 109.47333 * 35.55816 * 3 2 1 28 28 H 1.08996 * 109.47536 * 155.55947 * 3 2 1 29 29 H 0.97009 * 119.99900 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00226 * 242.73748 * 15 12 2 31 31 H 1.09000 * 109.47137 * 44.41555 * 16 15 12 32 32 H 1.09004 * 109.46809 * 284.42277 * 16 15 12 33 33 H 1.08999 * 109.47202 * 300.00373 * 17 16 15 34 34 H 1.09010 * 109.47218 * 59.99552 * 17 16 15 35 35 H 0.96994 * 120.00220 * 359.97438 * 18 17 16 36 36 H 1.08997 * 115.54448 * 34.32640 * 21 19 18 37 37 H 1.09000 * 117.50180 * 359.97438 * 22 21 19 38 38 H 1.09004 * 117.49252 * 145.01939 * 22 21 19 39 39 H 1.08998 * 117.50285 * 252.51110 * 23 22 21 40 40 H 1.09001 * 117.52091 * 107.48497 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3295 1.7726 -1.4142 5 1 1.8419 1.2475 -2.2222 6 6 3.0729 2.9038 -1.6764 7 7 3.1884 3.3432 -2.9105 8 14 3.9158 3.8123 -0.2787 9 1 5.2812 3.2620 -0.0830 10 1 4.0072 5.2567 -0.6111 11 1 3.1292 3.6402 0.9690 12 16 2.2930 -1.4342 -0.0006 13 8 3.5996 -1.1430 -0.4775 14 8 1.4380 -2.3908 -0.6113 15 7 2.4650 -1.9015 1.5787 16 6 1.2803 -2.1952 2.3889 17 6 1.6989 -2.9601 3.6461 18 7 0.5142 -3.2532 4.4566 19 6 0.6418 -3.9248 5.6181 20 8 1.7371 -4.2870 5.9921 21 6 -0.5768 -4.2258 6.4522 22 6 -0.7117 -3.5013 7.7929 23 6 -0.3662 -4.9913 7.7600 24 1 -0.3633 0.0000 1.0278 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8899 -0.5137 27 1 1.6552 2.0014 0.5976 28 1 3.1894 1.1156 0.4252 29 1 3.7117 4.1389 -3.0951 30 1 3.3501 -1.9808 1.9674 31 1 0.5848 -2.8020 1.8091 32 1 0.7959 -1.2618 2.6759 33 1 2.1833 -3.8934 3.3592 34 1 2.3944 -2.3532 4.2260 35 1 -0.3618 -2.9639 4.1573 36 1 -1.4911 -4.4258 5.8935 37 1 0.0810 -2.8072 8.0720 38 1 -1.7151 -3.2243 8.1165 39 1 -1.1422 -5.6947 8.0620 40 1 0.6536 -5.2777 8.0170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130725305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:02 Heat of formation + Delta-G solvation = -83.097706 kcal Electronic energy + Delta-G solvation = -23007.017167 eV Core-core repulsion = 19370.790713 eV Total energy + Delta-G solvation = -3636.226453 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.27162 -37.14251 -36.71165 -36.05462 -35.69220 -35.29661 -34.06580 -32.42110 -28.89619 -28.44734 -25.25642 -24.79872 -22.86837 -22.63325 -21.95243 -20.51460 -19.12455 -17.95001 -17.45430 -17.07993 -16.67772 -16.27018 -15.97504 -15.88119 -15.28615 -14.89586 -14.61423 -14.25105 -14.21940 -13.66621 -13.20125 -12.95203 -12.67404 -12.45485 -12.38247 -12.23736 -11.98083 -11.81786 -11.62477 -11.46306 -11.37089 -11.27991 -11.06386 -10.94428 -10.71773 -10.50159 -10.31571 -10.21896 -9.64432 -9.56116 -9.42061 -8.62037 -8.20316 -6.11472 -4.11377 1.02511 2.14703 2.68183 3.25267 3.30561 3.32970 3.41087 3.45905 3.97968 4.26756 4.36003 4.36414 4.43769 4.45332 4.70789 4.76124 4.90186 5.09547 5.16983 5.19250 5.30015 5.39126 5.49230 5.51752 5.58876 5.70017 5.76766 5.82723 6.04604 6.14481 6.38395 6.67130 6.88102 7.04481 7.10690 7.34640 7.54138 7.86933 8.44986 8.92795 9.47655 11.01941 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.003059 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.172982 B = 9149.917117 C = 9609.807440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.989 5.989 3 C 0.228 3.772 4 C -0.535 4.535 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.894 5.894 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.266 1.266 12 S 2.784 3.216 13 O -0.959 6.959 14 O -0.991 6.991 15 N -1.133 6.133 16 C 0.110 3.890 17 C 0.112 3.888 18 N -0.724 5.724 19 C 0.543 3.457 20 O -0.539 6.539 21 C -0.196 4.196 22 C -0.152 4.152 23 C -0.148 4.148 24 H 0.039 0.961 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.265 0.735 30 H 0.415 0.585 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.405 0.595 36 H 0.126 0.874 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.381 -12.392 19.852 25.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.832 5.832 3 C 0.104 3.896 4 C -0.574 4.574 5 H 0.096 0.904 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.190 1.190 12 S 2.791 3.209 13 O -0.942 6.942 14 O -0.974 6.974 15 N -0.892 5.892 16 C -0.017 4.017 17 C -0.013 4.013 18 N -0.377 5.377 19 C 0.330 3.670 20 O -0.416 6.416 21 C -0.217 4.217 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.057 0.943 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.248 0.752 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.144 0.856 37 H 0.118 0.882 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.368 -12.948 19.138 24.933 hybrid contribution 0.264 1.001 0.799 1.308 sum -9.104 -11.947 19.937 24.962 Atomic orbital electron populations 1.21424 0.79758 1.04119 1.00114 1.57375 1.14465 1.22541 1.88770 1.19443 0.90942 0.80524 0.98661 1.21367 1.32582 1.11195 0.92294 0.90391 1.24878 0.95617 0.96923 0.95523 1.69894 1.40511 1.23989 1.18782 0.86901 0.80914 0.79333 0.82832 1.19712 1.20961 1.19028 1.01953 0.73443 0.72907 0.72553 1.93658 1.38643 1.84486 1.77427 1.93538 1.68916 1.60861 1.74082 1.56230 1.13684 1.85894 1.33425 1.21284 0.88278 0.99900 0.92277 1.21519 0.88078 1.00724 0.90959 1.45762 1.11024 1.58435 1.22459 1.19678 0.89656 0.77032 0.80678 1.90717 1.27782 1.52150 1.70956 1.22195 0.98741 1.09610 0.91183 1.22957 1.03699 0.95989 0.96328 1.22962 1.04199 0.94537 0.96853 0.94271 0.90015 0.91244 0.94957 0.95064 0.92466 0.75192 0.89870 0.91100 0.90426 0.90561 0.76098 0.85637 0.88183 0.87639 0.87830 0.87380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.40 10.69 59.85 0.64 2.04 16 2 N -0.99 -18.82 3.23 -123.05 -0.40 -19.22 16 3 C 0.23 5.18 4.16 -5.19 -0.02 5.16 16 4 C -0.54 -15.00 9.93 -34.44 -0.34 -15.34 16 5 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 7 N -0.89 -27.28 13.96 55.43 0.77 -26.50 16 8 Si 0.87 20.91 27.37 -169.99 -4.65 16.26 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -5.86 6.69 56.52 0.38 -5.48 16 12 S 2.78 51.16 6.09 -107.50 -0.65 50.50 16 13 O -0.96 -21.86 16.99 -57.17 -0.97 -22.83 16 14 O -0.99 -19.48 16.34 -57.17 -0.93 -20.41 16 15 N -1.13 -14.51 6.05 -10.61 -0.06 -14.57 16 16 C 0.11 1.08 6.37 -4.04 -0.03 1.05 16 17 C 0.11 1.04 5.82 -4.04 -0.02 1.02 16 18 N -0.72 -5.73 5.56 -60.29 -0.33 -6.06 16 19 C 0.54 5.34 7.61 -10.98 -0.08 5.25 16 20 O -0.54 -7.51 16.26 5.56 0.09 -7.42 16 21 C -0.20 -1.29 6.19 -91.77 -0.57 -1.86 16 22 C -0.15 -0.86 10.23 -26.74 -0.27 -1.14 16 23 C -0.15 -0.95 10.04 -26.74 -0.27 -1.21 16 24 H 0.04 0.44 8.06 -51.92 -0.42 0.03 16 25 H 0.08 1.31 8.07 -51.93 -0.42 0.89 16 26 H 0.07 1.01 7.04 -51.93 -0.37 0.64 16 27 H 0.03 0.69 7.51 -51.93 -0.39 0.30 16 28 H 0.03 0.72 6.66 -51.93 -0.35 0.37 16 29 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.41 4.62 8.66 -34.47 -0.30 4.33 16 31 H 0.08 0.78 7.79 -51.93 -0.40 0.38 16 32 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.40 2.01 8.47 -40.82 -0.35 1.67 16 36 H 0.13 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 0.88 7.67 -51.93 -0.40 0.48 16 LS Contribution 352.49 15.07 5.31 5.31 Total: -1.00 -37.56 352.49 -8.82 -46.38 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.92 Total: 1.58 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -1.06 Total: -3.01 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.02 Total: -66.36 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -1.82 Total: -50.67 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.65 Total: 16.26 kcal Atomic # 16 Polarization: 51.16 SS G_CDS: -0.65 Total: 50.50 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -37.56 -8.82 -46.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130725305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.713 kcal (2) G-P(sol) polarization free energy of solvation -37.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds