Wall clock time and date at job start Fri Apr 10 2020 17:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46493 * 120.00108 * 2 1 4 4 C 1.50707 * 109.47440 * 275.55979 * 3 2 1 5 5 H 1.07997 * 119.99397 * 4.95099 * 4 3 2 6 6 C 1.37873 * 120.00390 * 184.95672 * 4 3 2 7 7 N 1.31508 * 119.99901 * 179.97438 * 6 4 3 8 8 Si 1.86800 * 119.99969 * 359.97438 * 6 4 3 9 9 H 1.48501 * 109.47252 * 89.99711 * 8 6 4 10 10 H 1.48499 * 109.47298 * 209.99986 * 8 6 4 11 11 H 1.48502 * 109.46902 * 329.99934 * 8 6 4 12 12 S 1.65599 * 119.99783 * 180.02562 * 2 1 3 13 13 O 1.42102 * 106.40256 * 159.52056 * 12 2 1 14 14 O 1.42092 * 106.40471 * 26.59396 * 12 2 1 15 15 N 1.65599 * 107.21583 * 273.05624 * 12 2 1 16 16 C 1.46499 * 120.00229 * 62.73797 * 15 12 2 17 17 C 1.52998 * 109.47660 * 164.42195 * 16 15 12 18 18 N 1.46497 * 109.47282 * 179.97438 * 17 16 15 19 19 C 1.34776 * 119.99634 * 179.97438 * 18 17 16 20 20 O 1.21279 * 120.00603 * 359.97438 * 19 18 17 21 21 C 1.50709 * 119.99896 * 179.97438 * 19 18 17 22 22 C 1.52998 * 117.49601 * 248.62099 * 21 19 18 23 23 C 1.52992 * 59.99943 * 252.50903 * 22 21 19 24 24 H 1.09009 * 109.46645 * 269.99836 * 1 2 3 25 25 H 1.08995 * 109.46996 * 29.99362 * 1 2 3 26 26 H 1.08991 * 109.47190 * 150.00407 * 1 2 3 27 27 H 1.09006 * 109.47333 * 35.55816 * 3 2 1 28 28 H 1.08996 * 109.47536 * 155.55947 * 3 2 1 29 29 H 0.97009 * 119.99900 * 180.02562 * 7 6 4 30 30 H 0.97000 * 120.00226 * 242.73748 * 15 12 2 31 31 H 1.09000 * 109.47137 * 44.41555 * 16 15 12 32 32 H 1.09004 * 109.46809 * 284.42277 * 16 15 12 33 33 H 1.08999 * 109.47202 * 300.00373 * 17 16 15 34 34 H 1.09010 * 109.47218 * 59.99552 * 17 16 15 35 35 H 0.96994 * 120.00220 * 359.97438 * 18 17 16 36 36 H 1.08997 * 115.54448 * 34.32640 * 21 19 18 37 37 H 1.09000 * 117.50180 * 359.97438 * 22 21 19 38 38 H 1.09004 * 117.49252 * 145.01939 * 22 21 19 39 39 H 1.08998 * 117.50285 * 252.51110 * 23 22 21 40 40 H 1.09001 * 117.52091 * 107.48497 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3295 1.7726 -1.4142 5 1 1.8419 1.2475 -2.2222 6 6 3.0729 2.9038 -1.6764 7 7 3.1884 3.3432 -2.9105 8 14 3.9158 3.8123 -0.2787 9 1 5.2812 3.2620 -0.0830 10 1 4.0072 5.2567 -0.6111 11 1 3.1292 3.6402 0.9690 12 16 2.2930 -1.4342 -0.0006 13 8 3.5996 -1.1430 -0.4775 14 8 1.4380 -2.3908 -0.6113 15 7 2.4650 -1.9015 1.5787 16 6 1.2803 -2.1952 2.3889 17 6 1.6989 -2.9601 3.6461 18 7 0.5142 -3.2532 4.4566 19 6 0.6418 -3.9248 5.6181 20 8 1.7371 -4.2870 5.9921 21 6 -0.5768 -4.2258 6.4522 22 6 -0.7117 -3.5013 7.7929 23 6 -0.3662 -4.9913 7.7600 24 1 -0.3633 0.0000 1.0278 25 1 -0.3633 0.8900 -0.5137 26 1 -0.3633 -0.8899 -0.5137 27 1 1.6552 2.0014 0.5976 28 1 3.1894 1.1156 0.4252 29 1 3.7117 4.1389 -3.0951 30 1 3.3501 -1.9808 1.9674 31 1 0.5848 -2.8020 1.8091 32 1 0.7959 -1.2618 2.6759 33 1 2.1833 -3.8934 3.3592 34 1 2.3944 -2.3532 4.2260 35 1 -0.3618 -2.9639 4.1573 36 1 -1.4911 -4.4258 5.8935 37 1 0.0810 -2.8072 8.0720 38 1 -1.7151 -3.2243 8.1165 39 1 -1.1422 -5.6947 8.0620 40 1 0.6536 -5.2777 8.0170 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130725305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:01 Heat of formation + Delta-G solvation = -115.483549 kcal Electronic energy + Delta-G solvation = -23008.421522 eV Core-core repulsion = 19370.790713 eV Total energy + Delta-G solvation = -3637.630809 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.98902 -38.38019 -37.73556 -37.28056 -36.88832 -36.79274 -34.96450 -34.49635 -30.25989 -29.75054 -26.77955 -25.48585 -23.84876 -23.39586 -23.25114 -21.20782 -20.44492 -19.17366 -18.75049 -18.61480 -18.19003 -17.38872 -16.89070 -16.73904 -16.46043 -16.04282 -15.73154 -15.38091 -15.25993 -14.88378 -14.56712 -14.48930 -14.06373 -13.55762 -13.46226 -13.38682 -13.27700 -13.11781 -13.08526 -12.98693 -12.65566 -12.41505 -12.33850 -12.23083 -12.01067 -11.69882 -11.52494 -11.42956 -10.99000 -10.77844 -10.61037 -10.17126 -9.77068 -8.28754 -6.34489 -0.41058 1.37449 1.42136 1.45509 1.49685 1.84133 2.24857 2.36167 2.65104 2.94756 3.06126 3.40544 3.62180 3.78677 3.91465 3.98742 4.01653 4.06863 4.26688 4.35066 4.48518 4.69740 4.74818 4.77675 4.83711 4.89411 4.92045 4.98428 5.06421 5.11462 5.24792 5.33850 5.36658 5.49262 5.72598 6.04315 6.30938 6.50171 6.69262 7.20399 7.29007 8.88690 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.022627 B = 0.003059 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.172982 B = 9149.917117 C = 9609.807440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.997 5.997 3 C 0.234 3.766 4 C -0.545 4.545 5 H 0.029 0.971 6 C 0.005 3.995 7 N -0.949 5.949 8 Si 0.943 3.057 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.226 1.226 12 S 2.802 3.198 13 O -1.010 7.010 14 O -1.008 7.008 15 N -1.117 6.117 16 C 0.106 3.894 17 C 0.117 3.883 18 N -0.711 5.711 19 C 0.536 3.464 20 O -0.589 6.589 21 C -0.197 4.197 22 C -0.142 4.142 23 C -0.158 4.158 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.035 0.965 29 H 0.267 0.733 30 H 0.424 0.576 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.421 0.579 36 H 0.156 0.844 37 H 0.086 0.914 38 H 0.132 0.868 39 H 0.126 0.874 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.181 -12.246 23.009 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.839 5.839 3 C 0.109 3.891 4 C -0.584 4.584 5 H 0.048 0.952 6 C -0.192 4.192 7 N -0.589 5.589 8 Si 0.765 3.235 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.148 1.148 12 S 2.809 3.191 13 O -0.994 6.994 14 O -0.991 6.991 15 N -0.881 5.881 16 C -0.020 4.020 17 C -0.009 4.009 18 N -0.364 5.364 19 C 0.324 3.676 20 O -0.470 6.470 21 C -0.218 4.218 22 C -0.179 4.179 23 C -0.195 4.195 24 H 0.108 0.892 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.260 0.740 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.259 0.741 36 H 0.174 0.826 37 H 0.105 0.895 38 H 0.150 0.850 39 H 0.144 0.856 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.238 -12.813 22.291 28.060 hybrid contribution 0.747 0.839 -0.229 1.146 sum -10.491 -11.975 22.062 27.207 Atomic orbital electron populations 1.21707 0.77555 1.03670 1.03270 1.57276 1.15998 1.21234 1.89361 1.19223 0.92110 0.82423 0.95336 1.21742 1.31686 1.10873 0.94080 0.95237 1.25952 0.96555 0.98160 0.98564 1.70073 1.42156 1.24997 1.21687 0.85789 0.79696 0.77540 0.80445 1.19806 1.20584 1.14805 1.01125 0.72003 0.72579 0.73371 1.93586 1.41265 1.85169 1.79385 1.93511 1.69059 1.61179 1.75342 1.55672 1.15422 1.85147 1.31899 1.21545 0.87087 1.01452 0.91924 1.21353 0.88604 1.00070 0.90833 1.45644 1.11478 1.57582 1.21691 1.20313 0.90016 0.76302 0.81006 1.90697 1.29892 1.54225 1.72183 1.22293 0.98216 1.10084 0.91209 1.23039 1.04642 0.95045 0.95180 1.23013 1.03602 0.95762 0.97119 0.89169 0.91412 0.90914 0.92300 0.94682 0.92397 0.73970 0.89042 0.88524 0.91582 0.90899 0.74080 0.82616 0.89548 0.84950 0.85589 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.32 10.69 127.77 1.37 3.68 16 2 N -1.00 -36.27 3.23 -543.23 -1.75 -38.02 16 3 C 0.23 10.24 4.16 85.64 0.36 10.59 16 4 C -0.54 -31.02 9.93 25.60 0.25 -30.77 16 5 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 6 C 0.01 0.31 5.47 84.65 0.46 0.78 16 7 N -0.95 -59.81 13.96 21.44 0.30 -59.51 16 8 Si 0.94 42.33 27.37 68.60 1.88 44.21 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.23 -8.61 6.69 99.48 0.67 -7.95 16 12 S 2.80 100.24 6.09 -56.49 -0.34 99.90 16 13 O -1.01 -46.47 16.99 -128.00 -2.18 -48.65 16 14 O -1.01 -38.75 16.34 -128.00 -2.09 -40.84 16 15 N -1.12 -26.11 6.05 -187.49 -1.13 -27.25 16 16 C 0.11 1.72 6.37 86.38 0.55 2.27 16 17 C 0.12 1.91 5.82 86.38 0.50 2.41 16 18 N -0.71 -9.34 5.56 -463.05 -2.57 -11.91 16 19 C 0.54 9.66 7.61 87.66 0.67 10.32 16 20 O -0.59 -16.35 16.26 -3.03 -0.05 -16.40 16 21 C -0.20 -2.08 6.19 -11.54 -0.07 -2.15 16 22 C -0.14 -1.24 10.23 30.59 0.31 -0.93 16 23 C -0.16 -1.75 10.04 30.59 0.31 -1.44 16 24 H 0.09 1.60 8.06 -2.38 -0.02 1.59 16 25 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 26 H 0.07 1.97 7.04 -2.39 -0.02 1.96 16 27 H 0.06 2.29 7.51 -2.38 -0.02 2.28 16 28 H 0.04 1.53 6.66 -2.39 -0.02 1.51 16 29 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 30 H 0.42 8.68 8.66 -96.74 -0.84 7.84 16 31 H 0.09 1.39 7.79 -2.39 -0.02 1.37 16 32 H 0.10 1.14 8.06 -2.38 -0.02 1.12 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 35 H 0.42 2.58 8.47 -92.71 -0.79 1.79 16 36 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 39 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.08 1.36 7.67 -2.39 -0.02 1.34 16 Total: -1.00 -85.99 352.49 -3.83 -89.82 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -0.60 Total: 13.88 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.71 Total: -5.24 kcal Atomic # 7 Polarization: -131.53 SS G_CDS: -5.16 Total: -136.69 kcal Atomic # 8 Polarization: -101.57 SS G_CDS: -4.32 Total: -105.89 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.21 kcal Atomic # 16 Polarization: 100.24 SS G_CDS: -0.34 Total: 99.90 kcal Total: -85.99 -3.83 -89.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130725305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.659 kcal (2) G-P(sol) polarization free energy of solvation -85.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds