Wall clock time and date at job start Fri Apr 10 2020 17:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 119.99885 * 2 1 4 4 S 1.65600 * 120.00151 * 180.02562 * 2 1 3 5 5 O 1.42102 * 106.40350 * 336.45973 * 4 2 1 6 6 O 1.42104 * 106.40084 * 203.53874 * 4 2 1 7 7 N 1.65606 * 107.21827 * 89.99919 * 4 2 1 8 8 C 1.36937 * 119.99651 * 264.47854 * 7 4 2 9 9 H 1.08005 * 120.00190 * 32.39726 * 8 7 4 10 10 C 1.38814 * 119.99929 * 212.39154 * 8 7 4 11 11 N 1.31623 * 119.99703 * 24.26708 * 10 8 7 12 12 Si 1.86801 * 119.99974 * 204.26381 * 10 8 7 13 13 H 1.48499 * 109.47343 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46657 * 120.00336 * 12 10 8 15 15 H 1.48500 * 109.46889 * 240.00065 * 12 10 8 16 16 C 1.46493 * 119.99885 * 84.47931 * 7 4 2 17 17 C 1.50698 * 109.47282 * 265.00032 * 16 7 4 18 18 O 1.21282 * 120.00163 * 359.97438 * 17 16 7 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 7 20 20 C 1.46502 * 119.99890 * 179.97438 * 19 17 16 21 21 C 1.52994 * 109.47056 * 179.97438 * 20 19 17 22 22 C 1.52995 * 117.50119 * 243.62398 * 21 20 19 23 23 C 1.52998 * 117.49851 * 174.99783 * 21 20 19 24 24 H 1.09002 * 109.46930 * 269.99380 * 1 2 3 25 25 H 1.08997 * 109.47645 * 29.99609 * 1 2 3 26 26 H 1.09004 * 109.47420 * 150.00090 * 1 2 3 27 27 H 1.08998 * 109.47267 * 270.00348 * 3 2 1 28 28 H 1.09006 * 109.46886 * 30.00201 * 3 2 1 29 29 H 1.09002 * 109.47121 * 150.00055 * 3 2 1 30 30 H 0.96998 * 119.99263 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.46934 * 144.99848 * 16 7 4 32 32 H 1.08998 * 109.47591 * 25.00243 * 16 7 4 33 33 H 0.96996 * 119.99793 * 0.02562 * 19 17 16 34 34 H 1.08998 * 109.47144 * 300.00248 * 20 19 17 35 35 H 1.08997 * 109.46716 * 60.00160 * 20 19 17 36 36 H 1.09002 * 115.55070 * 29.33134 * 21 20 19 37 37 H 1.09000 * 117.49903 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.50347 * 145.02421 * 22 21 20 39 39 H 1.08997 * 117.50249 * 214.98006 * 23 21 20 40 40 H 1.08997 * 117.50298 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4113 -2.4068 0.5434 6 8 3.5759 -1.1569 0.5439 7 7 2.5381 -1.8580 -1.5827 8 6 1.6716 -2.7178 -2.2032 9 1 0.6265 -2.7213 -1.9309 10 6 2.1365 -3.5850 -3.1824 11 7 3.4036 -3.9410 -3.1984 12 14 0.9639 -4.2468 -4.4771 13 1 -0.3956 -3.6981 -4.2406 14 1 1.4342 -3.8390 -5.8254 15 1 0.9213 -5.7289 -4.3951 16 6 3.6818 -1.3130 -2.3182 17 6 3.2485 -0.0918 -3.0876 18 8 2.0976 0.2858 -3.0279 19 7 4.1399 0.5801 -3.8430 20 6 3.7186 1.7669 -4.5915 21 6 4.9131 2.3361 -5.3596 22 6 5.3937 3.7382 -4.9803 23 6 4.6519 3.5146 -6.2997 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8900 -0.5138 27 1 2.3790 1.5835 -1.0276 28 1 1.6083 2.0284 0.5139 29 1 3.1498 1.1384 0.5138 30 1 3.7284 -4.5472 -3.8824 31 1 4.0592 -2.0645 -3.0117 32 1 4.4688 -1.0394 -1.6155 33 1 5.0602 0.2774 -3.8917 34 1 2.9315 1.4929 -5.2940 35 1 3.3413 2.5186 -3.8982 36 1 5.6677 1.6095 -5.6610 37 1 4.8592 4.2550 -4.1833 38 1 6.4647 3.9344 -5.0321 39 1 5.2348 3.5636 -7.2193 40 1 3.6291 3.8847 -6.3707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331737641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:13 Heat of formation + Delta-G solvation = -67.192157 kcal Electronic energy + Delta-G solvation = -24779.776928 eV Core-core repulsion = 21144.240191 eV Total energy + Delta-G solvation = -3635.536737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.10082 -37.47936 -36.20670 -35.37653 -35.18673 -34.71821 -33.57155 -31.31499 -28.24657 -27.52759 -25.83207 -24.06221 -23.59648 -22.54641 -20.92457 -19.87720 -18.50260 -17.56373 -16.92358 -16.62590 -16.07227 -16.02214 -15.22708 -14.93941 -14.54829 -14.31081 -14.08055 -13.90647 -13.79970 -13.16651 -12.93593 -12.83525 -12.37948 -12.05577 -11.72430 -11.69918 -11.66199 -11.45033 -11.38390 -11.14351 -10.89868 -10.86085 -10.74312 -10.70227 -10.60361 -10.48638 -10.25254 -10.16546 -9.41827 -8.96353 -8.57208 -8.35916 -7.71749 -6.24654 -3.90372 1.68389 3.22733 3.32227 3.39518 3.44896 3.46368 3.75088 4.05135 4.31688 4.57197 4.63710 4.76806 4.86189 5.03282 5.18566 5.37891 5.42954 5.45763 5.54692 5.71970 5.80766 5.85399 5.87975 5.89113 5.94682 6.07510 6.14116 6.16991 6.21283 6.28797 6.50452 6.78761 6.94555 7.15273 7.31603 7.68767 8.06428 8.43514 8.98045 9.01239 9.40472 10.79327 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.006585 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.698931 B = 4251.086563 C = 5708.522360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -1.008 6.008 3 C 0.093 3.907 4 S 2.762 3.238 5 O -0.982 6.982 6 O -1.013 7.013 7 N -0.833 5.833 8 C -0.281 4.281 9 H 0.092 0.908 10 C 0.035 3.965 11 N -0.872 5.872 12 Si 0.913 3.087 13 H -0.269 1.269 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.092 3.908 17 C 0.491 3.509 18 O -0.524 6.524 19 N -0.742 5.742 20 C 0.154 3.846 21 C -0.166 4.166 22 C -0.178 4.178 23 C -0.174 4.174 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.265 0.735 31 H 0.147 0.853 32 H 0.087 0.913 33 H 0.397 0.603 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 13.006 -3.605 13.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.847 5.847 3 C -0.053 4.053 4 S 2.775 3.225 5 O -0.966 6.966 6 O -0.997 6.997 7 N -0.664 5.664 8 C -0.413 4.413 9 H 0.109 0.891 10 C -0.170 4.170 11 N -0.513 5.513 12 Si 0.740 3.260 13 H -0.193 1.193 14 H -0.209 1.209 15 H -0.209 1.209 16 C -0.040 4.040 17 C 0.277 3.723 18 O -0.398 6.398 19 N -0.397 5.397 20 C 0.029 3.971 21 C -0.184 4.184 22 C -0.215 4.215 23 C -0.212 4.212 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.105 0.895 33 H 0.231 0.769 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.128 0.872 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.624 12.716 -2.761 13.274 hybrid contribution -0.136 -0.107 -1.339 1.350 sum 2.488 12.609 -4.100 13.490 Atomic orbital electron populations 1.21220 0.79266 1.02904 1.00265 1.57736 1.14810 1.21996 1.90165 1.21400 0.96435 0.85904 1.01593 1.02838 0.72851 0.72408 0.74373 1.93490 1.67155 1.58052 1.77904 1.93450 1.41410 1.85874 1.78965 1.52637 1.34657 1.53571 1.25556 1.19007 0.90227 1.12947 1.19166 0.89082 1.25172 0.96394 0.95234 1.00176 1.69899 1.14912 1.32577 1.33885 0.86098 0.81008 0.78234 0.80690 1.19301 1.20930 1.20927 1.21325 0.90187 0.93862 0.98625 1.22293 0.85823 0.84883 0.79323 1.90615 1.18373 1.67496 1.63346 1.46157 1.13688 1.29632 1.50240 1.20725 0.94580 0.87638 0.94131 1.22507 1.00829 0.91793 1.03278 1.23065 1.00606 0.98974 0.98825 1.22933 1.01916 1.02074 0.94258 0.93884 0.92027 0.91029 0.92932 0.92123 0.91085 0.92454 0.83692 0.89540 0.76916 0.91680 0.91990 0.87214 0.88605 0.88805 0.88684 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.91 10.29 59.84 0.62 2.53 16 2 N -1.01 -19.91 3.64 -129.21 -0.47 -20.38 16 3 C 0.09 1.55 10.66 59.85 0.64 2.19 16 4 S 2.76 65.78 6.02 -107.50 -0.65 65.14 16 5 O -0.98 -25.97 16.29 -57.17 -0.93 -26.91 16 6 O -1.01 -24.78 15.42 -57.17 -0.88 -25.66 16 7 N -0.83 -20.71 2.43 -61.09 -0.15 -20.86 16 8 C -0.28 -7.54 8.76 -15.06 -0.13 -7.67 16 9 H 0.09 2.46 7.86 -52.48 -0.41 2.05 16 10 C 0.03 0.91 4.98 -17.43 -0.09 0.82 16 11 N -0.87 -23.04 11.23 55.49 0.62 -22.41 16 12 Si 0.91 20.87 29.62 -169.99 -5.03 15.84 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 16 C 0.09 2.02 5.78 -5.20 -0.03 1.99 16 17 C 0.49 9.77 7.66 -10.98 -0.08 9.69 16 18 O -0.52 -11.67 15.09 5.56 0.08 -11.59 16 19 N -0.74 -11.32 5.56 -60.30 -0.34 -11.66 16 20 C 0.15 2.04 5.96 -4.04 -0.02 2.02 16 21 C -0.17 -1.68 5.85 -90.63 -0.53 -2.21 16 22 C -0.18 -1.56 10.18 -26.73 -0.27 -1.83 16 23 C -0.17 -1.52 10.25 -26.73 -0.27 -1.79 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.94 8.07 -51.93 -0.42 0.52 16 26 H 0.07 1.35 7.79 -51.93 -0.40 0.95 16 27 H 0.05 0.90 6.62 -51.93 -0.34 0.55 16 28 H 0.06 0.82 8.07 -51.93 -0.42 0.40 16 29 H 0.07 1.18 7.02 -51.93 -0.36 0.82 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 31 H 0.15 3.40 5.25 -51.93 -0.27 3.13 16 32 H 0.09 1.78 6.99 -51.93 -0.36 1.41 16 33 H 0.40 5.06 8.40 -40.82 -0.34 4.72 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.06 0.84 7.87 -51.93 -0.41 0.43 16 36 H 0.11 1.04 8.04 -51.93 -0.42 0.63 16 37 H 0.10 0.84 8.03 -51.93 -0.42 0.43 16 38 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -32.69 346.01 -8.54 -41.23 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.83 Total: 6.30 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -0.18 Total: 5.74 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -0.33 Total: -75.30 kcal Atomic # 8 Polarization: -62.42 SS G_CDS: -1.73 Total: -64.15 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 16 Polarization: 65.78 SS G_CDS: -0.65 Total: 65.14 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.69 -8.54 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331737641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.963 kcal (2) G-P(sol) polarization free energy of solvation -32.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds