Wall clock time and date at job start Fri Apr 10 2020 17:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46500 * 119.99885 * 2 1 4 4 S 1.65600 * 120.00151 * 180.02562 * 2 1 3 5 5 O 1.42102 * 106.40350 * 336.45973 * 4 2 1 6 6 O 1.42104 * 106.40084 * 203.53874 * 4 2 1 7 7 N 1.65606 * 107.21827 * 89.99919 * 4 2 1 8 8 C 1.36937 * 119.99651 * 264.47854 * 7 4 2 9 9 H 1.08005 * 120.00190 * 32.39726 * 8 7 4 10 10 C 1.38814 * 119.99929 * 212.39154 * 8 7 4 11 11 N 1.31623 * 119.99703 * 24.26708 * 10 8 7 12 12 Si 1.86801 * 119.99974 * 204.26381 * 10 8 7 13 13 H 1.48499 * 109.47343 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46657 * 120.00336 * 12 10 8 15 15 H 1.48500 * 109.46889 * 240.00065 * 12 10 8 16 16 C 1.46493 * 119.99885 * 84.47931 * 7 4 2 17 17 C 1.50698 * 109.47282 * 265.00032 * 16 7 4 18 18 O 1.21282 * 120.00163 * 359.97438 * 17 16 7 19 19 N 1.34783 * 120.00004 * 180.02562 * 17 16 7 20 20 C 1.46502 * 119.99890 * 179.97438 * 19 17 16 21 21 C 1.52994 * 109.47056 * 179.97438 * 20 19 17 22 22 C 1.52995 * 117.50119 * 243.62398 * 21 20 19 23 23 C 1.52998 * 117.49851 * 174.99783 * 21 20 19 24 24 H 1.09002 * 109.46930 * 269.99380 * 1 2 3 25 25 H 1.08997 * 109.47645 * 29.99609 * 1 2 3 26 26 H 1.09004 * 109.47420 * 150.00090 * 1 2 3 27 27 H 1.08998 * 109.47267 * 270.00348 * 3 2 1 28 28 H 1.09006 * 109.46886 * 30.00201 * 3 2 1 29 29 H 1.09002 * 109.47121 * 150.00055 * 3 2 1 30 30 H 0.96998 * 119.99263 * 179.97438 * 11 10 8 31 31 H 1.09004 * 109.46934 * 144.99848 * 16 7 4 32 32 H 1.08998 * 109.47591 * 25.00243 * 16 7 4 33 33 H 0.96996 * 119.99793 * 0.02562 * 19 17 16 34 34 H 1.08998 * 109.47144 * 300.00248 * 20 19 17 35 35 H 1.08997 * 109.46716 * 60.00160 * 20 19 17 36 36 H 1.09002 * 115.55070 * 29.33134 * 21 20 19 37 37 H 1.09000 * 117.49903 * 0.02562 * 22 21 20 38 38 H 1.08999 * 117.50347 * 145.02421 * 22 21 20 39 39 H 1.08997 * 117.50249 * 214.98006 * 23 21 20 40 40 H 1.08997 * 117.50298 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 16 2.2930 -1.4341 -0.0006 5 8 1.4113 -2.4068 0.5434 6 8 3.5759 -1.1569 0.5439 7 7 2.5381 -1.8580 -1.5827 8 6 1.6716 -2.7178 -2.2032 9 1 0.6265 -2.7213 -1.9309 10 6 2.1365 -3.5850 -3.1824 11 7 3.4036 -3.9410 -3.1984 12 14 0.9639 -4.2468 -4.4771 13 1 -0.3956 -3.6981 -4.2406 14 1 1.4342 -3.8390 -5.8254 15 1 0.9213 -5.7289 -4.3951 16 6 3.6818 -1.3130 -2.3182 17 6 3.2485 -0.0918 -3.0876 18 8 2.0976 0.2858 -3.0279 19 7 4.1399 0.5801 -3.8430 20 6 3.7186 1.7669 -4.5915 21 6 4.9131 2.3361 -5.3596 22 6 5.3937 3.7382 -4.9803 23 6 4.6519 3.5146 -6.2997 24 1 -0.3633 -0.0001 1.0277 25 1 -0.3634 0.8900 -0.5137 26 1 -0.3634 -0.8900 -0.5138 27 1 2.3790 1.5835 -1.0276 28 1 1.6083 2.0284 0.5139 29 1 3.1498 1.1384 0.5138 30 1 3.7284 -4.5472 -3.8824 31 1 4.0592 -2.0645 -3.0117 32 1 4.4688 -1.0394 -1.6155 33 1 5.0602 0.2774 -3.8917 34 1 2.9315 1.4929 -5.2940 35 1 3.3413 2.5186 -3.8982 36 1 5.6677 1.6095 -5.6610 37 1 4.8592 4.2550 -4.1833 38 1 6.4647 3.9344 -5.0321 39 1 5.2348 3.5636 -7.2193 40 1 3.6291 3.8847 -6.3707 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331737641.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:12 Heat of formation + Delta-G solvation = -91.612129 kcal Electronic energy + Delta-G solvation = -24780.835858 eV Core-core repulsion = 21144.240191 eV Total energy + Delta-G solvation = -3636.595666 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.57153 -38.44110 -38.13721 -37.01487 -36.88393 -36.64019 -34.91572 -33.27312 -29.77794 -28.90732 -27.31649 -25.69895 -25.27364 -23.21443 -21.90671 -21.30215 -20.37131 -19.31004 -18.58158 -18.42362 -17.63418 -17.20964 -16.95765 -16.39293 -16.26899 -15.60607 -15.43531 -15.41310 -14.98342 -14.90689 -14.40496 -14.18969 -13.95402 -13.58776 -13.40339 -13.33656 -13.18851 -13.07676 -12.77578 -12.61474 -12.55873 -12.42379 -12.35199 -12.31262 -12.26474 -12.02024 -11.41734 -11.22471 -11.07441 -10.67831 -9.94503 -9.84522 -9.59474 -8.21529 -5.92789 -0.12692 1.41220 1.45662 1.58266 1.87260 2.07703 2.40853 2.49713 2.78256 2.94689 3.08322 3.59735 3.75814 3.97752 4.01954 4.09002 4.21498 4.32754 4.39753 4.48521 4.54783 4.72036 4.77545 4.80206 4.83005 4.86760 4.91254 4.93977 5.05533 5.16035 5.25109 5.29253 5.35953 5.65292 5.68628 5.82643 6.42848 6.73472 7.01813 7.40576 7.48853 8.81711 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011919 B = 0.006585 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.698931 B = 4251.086563 C = 5708.522360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -1.006 6.006 3 C 0.090 3.910 4 S 2.768 3.232 5 O -1.016 7.016 6 O -1.026 7.026 7 N -0.846 5.846 8 C -0.302 4.302 9 H 0.078 0.922 10 C -0.002 4.002 11 N -0.891 5.891 12 Si 0.966 3.034 13 H -0.271 1.271 14 H -0.276 1.276 15 H -0.278 1.278 16 C 0.089 3.911 17 C 0.494 3.506 18 O -0.550 6.550 19 N -0.725 5.725 20 C 0.156 3.844 21 C -0.177 4.177 22 C -0.170 4.170 23 C -0.167 4.167 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.270 0.730 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.411 0.589 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.508 14.808 -4.587 15.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.848 5.848 3 C -0.055 4.055 4 S 2.782 3.218 5 O -1.000 7.000 6 O -1.010 7.010 7 N -0.677 5.677 8 C -0.434 4.434 9 H 0.096 0.904 10 C -0.204 4.204 11 N -0.532 5.532 12 Si 0.791 3.209 13 H -0.195 1.195 14 H -0.202 1.202 15 H -0.204 1.204 16 C -0.042 4.042 17 C 0.279 3.721 18 O -0.428 6.428 19 N -0.380 5.380 20 C 0.032 3.968 21 C -0.195 4.195 22 C -0.207 4.207 23 C -0.205 4.205 24 H 0.084 0.916 25 H 0.106 0.894 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.113 0.887 33 H 0.246 0.754 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.136 0.864 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.036 14.530 -3.767 15.314 hybrid contribution -0.213 -0.580 -1.007 1.182 sum 2.823 13.950 -4.774 15.012 Atomic orbital electron populations 1.21414 0.77823 1.03106 1.01827 1.57466 1.15760 1.21703 1.89850 1.21592 0.96841 0.85201 1.01880 1.02391 0.72478 0.72895 0.74048 1.93435 1.67865 1.60071 1.78639 1.93419 1.42164 1.86202 1.79193 1.52670 1.35009 1.54120 1.25926 1.19038 0.90128 1.14006 1.20233 0.90439 1.25830 0.97846 0.95471 1.01274 1.69962 1.15865 1.32979 1.34406 0.85297 0.79187 0.77764 0.78671 1.19533 1.20152 1.20405 1.21334 0.89668 0.94546 0.98701 1.21790 0.85897 0.84641 0.79796 1.90593 1.19452 1.68217 1.64499 1.45964 1.13664 1.29540 1.48782 1.20787 0.95791 0.86479 0.93716 1.22396 1.00029 0.92709 1.04386 1.23144 1.01536 0.97224 0.98774 1.23035 1.02268 1.00324 0.94840 0.91636 0.89443 0.93222 0.93393 0.88340 0.91253 0.91990 0.85061 0.88708 0.75357 0.93211 0.92199 0.86372 0.88709 0.87318 0.87174 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.50 10.29 127.77 1.31 4.82 16 2 N -1.01 -38.93 3.64 -562.69 -2.05 -40.98 16 3 C 0.09 2.84 10.66 127.77 1.36 4.20 16 4 S 2.77 133.33 6.02 -56.49 -0.34 132.99 16 5 O -1.02 -54.96 16.29 -128.00 -2.09 -57.05 16 6 O -1.03 -50.42 15.42 -128.00 -1.97 -52.39 16 7 N -0.85 -42.76 2.43 -347.19 -0.84 -43.60 16 8 C -0.30 -16.52 8.76 84.03 0.74 -15.78 16 9 H 0.08 4.34 7.86 -2.91 -0.02 4.32 16 10 C 0.00 -0.08 4.98 84.86 0.42 0.34 16 11 N -0.89 -47.44 11.23 21.65 0.24 -47.20 16 12 Si 0.97 42.92 29.62 68.60 2.03 44.95 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 15 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 16 C 0.09 3.95 5.78 85.63 0.49 4.44 16 17 C 0.49 19.53 7.66 87.66 0.67 20.21 16 18 O -0.55 -24.46 15.09 -3.04 -0.05 -24.51 16 19 N -0.72 -21.43 5.56 -463.06 -2.57 -24.01 16 20 C 0.16 3.95 5.96 86.38 0.51 4.47 16 21 C -0.18 -3.19 5.85 -10.80 -0.06 -3.26 16 22 C -0.17 -2.51 10.18 30.59 0.31 -2.20 16 23 C -0.17 -2.48 10.25 30.59 0.31 -2.16 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 26 H 0.05 1.89 7.79 -2.38 -0.02 1.87 16 27 H 0.05 1.57 6.62 -2.39 -0.02 1.55 16 28 H 0.10 2.36 8.07 -2.38 -0.02 2.34 16 29 H 0.07 2.20 7.02 -2.39 -0.02 2.19 16 30 H 0.27 13.43 8.31 -92.71 -0.77 12.66 16 31 H 0.13 6.26 5.25 -2.39 -0.01 6.24 16 32 H 0.10 3.93 6.99 -2.39 -0.02 3.92 16 33 H 0.41 9.94 8.40 -92.71 -0.78 9.16 16 34 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.56 7.87 -2.39 -0.02 1.54 16 36 H 0.12 1.96 8.04 -2.39 -0.02 1.94 16 37 H 0.09 1.44 8.03 -2.39 -0.02 1.42 16 38 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.11 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -70.36 346.01 -1.28 -71.65 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.28 Total: 25.09 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.08 Total: 15.06 kcal Atomic # 7 Polarization: -150.56 SS G_CDS: -5.22 Total: -155.78 kcal Atomic # 8 Polarization: -129.85 SS G_CDS: -4.10 Total: -133.95 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: 133.33 SS G_CDS: -0.34 Total: 132.99 kcal Total: -70.36 -1.28 -71.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331737641.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.966 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds