Wall clock time and date at job start Fri Apr 10 2020 17:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46504 * 119.99768 * 275.00333 * 3 2 1 5 5 C 1.50697 * 109.47566 * 85.00143 * 4 3 2 6 6 H 1.08002 * 119.99912 * 359.97438 * 5 4 3 7 7 C 1.37876 * 120.00027 * 179.97438 * 5 4 3 8 8 N 1.31508 * 120.00013 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99837 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47279 * 90.00053 * 9 7 5 11 11 H 1.48503 * 109.47082 * 209.99897 * 9 7 5 12 12 H 1.48507 * 109.47164 * 330.00081 * 9 7 5 13 13 S 1.65594 * 120.00086 * 94.99557 * 3 2 1 14 14 O 1.42102 * 106.40753 * 203.54193 * 13 3 2 15 15 O 1.42099 * 106.40296 * 336.46577 * 13 3 2 16 16 N 1.65606 * 107.21631 * 90.00079 * 13 3 2 17 17 C 1.47424 * 125.64916 * 269.69242 * 16 13 3 18 18 C 1.55129 * 104.71838 * 155.81661 * 17 16 13 19 19 C 1.55153 * 101.48872 * 37.29669 * 18 17 16 20 20 C 1.47025 * 125.64731 * 89.99991 * 16 13 3 21 21 H 1.09005 * 109.88386 * 300.59817 * 20 16 13 22 22 C 1.50703 * 109.88091 * 61.60778 * 20 16 13 23 23 N 1.34777 * 119.99942 * 180.02562 * 22 20 16 24 24 O 1.21280 * 120.00333 * 359.97438 * 22 20 16 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00226 * 1 2 3 27 27 H 1.09000 * 109.47050 * 60.00054 * 1 2 3 28 28 H 1.09000 * 109.47050 * 119.99945 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00058 * 2 1 3 30 30 H 1.09010 * 109.46832 * 204.99905 * 4 3 2 31 31 H 1.08995 * 109.47106 * 324.99536 * 4 3 2 32 32 H 0.97000 * 119.99948 * 179.97438 * 8 7 5 33 33 H 1.08998 * 110.36633 * 274.74283 * 17 16 13 34 34 H 1.09000 * 110.36644 * 37.07107 * 17 16 13 35 35 H 1.09002 * 111.19254 * 279.19117 * 18 17 16 36 36 H 1.09002 * 110.93773 * 155.29218 * 18 17 16 37 37 H 1.08999 * 110.72247 * 205.96370 * 19 18 17 38 38 H 1.08999 * 110.72041 * 82.69675 * 19 18 17 39 39 H 0.97004 * 119.99932 * 359.97438 * 23 22 20 40 40 H 0.97002 * 120.00260 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 -1.2640 5 6 0.8360 2.7289 -1.6356 6 1 -0.0228 2.5942 -0.9947 7 6 0.7226 3.4681 -2.7939 8 7 1.7684 3.6324 -3.5741 9 14 -0.9166 4.2362 -3.2550 10 1 -1.0065 5.5988 -2.6712 11 1 -1.0241 4.3232 -4.7336 12 1 -2.0224 3.3974 -2.7267 13 16 2.4121 2.1202 1.4286 14 8 2.3056 3.5187 1.1998 15 8 1.6868 1.4415 2.4447 16 7 4.0144 1.8138 1.7137 17 6 4.5488 0.6626 2.4639 18 6 5.9959 0.4845 1.9342 19 6 6.4369 1.9591 1.7381 20 6 5.1392 2.6480 1.2661 21 1 5.1328 2.7267 0.1790 22 6 5.0353 4.0206 1.8797 23 7 5.9672 4.9543 1.6040 24 8 4.1125 4.2852 2.6210 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 2.9080 2.8919 -1.1513 31 1 2.4689 1.4183 -2.0480 32 1 1.6886 4.1522 -4.3892 33 1 4.5572 0.8771 3.5325 34 1 3.9580 -0.2304 2.2598 35 1 6.0053 -0.0553 0.9873 36 1 6.6223 -0.0157 2.6729 37 1 7.2117 2.0317 0.9749 38 1 6.7804 2.3873 2.6797 39 1 6.7050 4.7428 1.0109 40 1 5.9005 5.8377 1.9992 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336900402.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:18 Heat of formation + Delta-G solvation = -107.614179 kcal Electronic energy + Delta-G solvation = -25270.827221 eV Core-core repulsion = 21633.537654 eV Total energy + Delta-G solvation = -3637.289567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.85216 -37.35216 -36.39230 -35.97563 -34.88832 -33.54435 -32.56134 -30.78491 -29.76611 -29.37625 -26.69850 -23.45289 -22.75562 -21.82569 -21.53337 -20.52760 -18.63905 -17.53244 -17.17162 -16.73138 -16.47964 -16.25871 -15.48286 -15.02516 -14.56600 -14.31890 -13.82931 -13.78169 -13.46769 -13.25501 -12.97225 -12.86715 -12.59332 -12.16764 -11.82919 -11.78257 -11.45231 -11.38174 -11.26325 -11.04637 -11.00909 -10.96582 -10.93184 -10.91351 -10.42608 -10.35608 -9.91059 -9.80027 -9.57815 -9.46595 -8.81222 -8.40192 -8.03502 -6.03830 -4.05873 1.25923 2.87914 3.34737 3.40770 3.44356 3.48110 3.70623 4.25798 4.34109 4.47168 4.56502 4.76785 5.07652 5.13157 5.21197 5.31117 5.41009 5.46419 5.54569 5.65941 5.68543 5.76700 5.89677 5.96275 6.05964 6.16623 6.25990 6.44854 6.50846 6.77753 6.95291 7.03014 7.23996 7.45323 7.46706 7.68769 7.95030 8.25062 8.48201 8.96163 9.58646 11.04995 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016206 B = 0.006262 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.364087 B = 4470.149115 C = 5226.990407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.135 3.865 3 N -0.996 5.996 4 C 0.260 3.740 5 C -0.522 4.522 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.791 3.209 14 O -0.938 6.938 15 O -0.991 6.991 16 N -1.003 6.003 17 C 0.121 3.879 18 C -0.128 4.128 19 C -0.118 4.118 20 C 0.134 3.866 21 H 0.105 0.895 22 C 0.502 3.498 23 N -0.856 5.856 24 O -0.511 6.511 25 H 0.050 0.950 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.262 0.738 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.398 0.602 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.634 -6.737 7.833 17.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 N -0.838 5.838 4 C 0.138 3.862 5 C -0.561 4.561 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.537 5.537 9 Si 0.722 3.278 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.800 3.200 14 O -0.922 6.922 15 O -0.976 6.976 16 N -0.840 5.840 17 C -0.005 4.005 18 C -0.167 4.167 19 C -0.157 4.157 20 C 0.023 3.977 21 H 0.122 0.878 22 C 0.284 3.716 23 N -0.422 5.422 24 O -0.384 6.384 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.226 0.774 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 12.310 -6.155 8.669 16.266 hybrid contribution -0.317 0.663 -0.848 1.122 sum 11.993 -5.493 7.821 15.335 Atomic orbital electron populations 1.22261 0.96374 1.00809 1.03713 1.20943 0.94887 0.82462 1.00831 1.58013 1.77984 1.23057 1.24728 1.18999 0.97439 0.90738 0.79034 1.21532 0.96368 1.31587 1.06635 0.91934 1.24913 0.96851 0.96011 0.96244 1.69909 1.29269 1.40826 1.13739 0.86558 0.83982 0.80022 0.77262 1.20482 1.21214 1.19774 1.01888 0.71620 0.73707 0.72763 1.93658 1.84216 1.29134 1.85153 1.93514 1.69432 1.76879 1.57738 1.59411 1.23222 1.33308 1.68053 1.21981 0.94394 0.88166 0.95936 1.22833 0.95673 0.95940 1.02257 1.22615 0.94962 0.95827 1.02331 1.21184 0.88259 0.88364 0.99936 0.87768 1.20977 0.81769 0.87156 0.81680 1.43705 1.29334 1.16047 1.53075 1.90782 1.31299 1.80500 1.35808 0.93084 0.92845 0.90266 0.92407 0.91179 0.94954 0.94864 0.92837 0.91547 0.90592 0.90032 0.89908 0.89274 0.90325 0.77368 0.76882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.83 37.16 0.37 -2.83 16 2 C 0.14 2.45 6.09 -4.04 -0.02 2.42 16 3 N -1.00 -21.42 2.86 -115.66 -0.33 -21.75 16 4 C 0.26 6.52 5.12 -5.19 -0.03 6.49 16 5 C -0.52 -14.71 8.41 -34.44 -0.29 -15.00 16 6 H 0.06 1.78 6.89 -52.49 -0.36 1.42 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 9 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 13 S 2.79 61.58 5.90 -107.50 -0.63 60.95 16 14 O -0.94 -24.79 13.98 -66.57 -0.93 -25.72 16 15 O -0.99 -22.99 16.69 -57.17 -0.95 -23.94 16 16 N -1.00 -16.79 3.18 -105.51 -0.34 -17.13 16 17 C 0.12 1.52 6.99 -2.41 -0.02 1.50 16 18 C -0.13 -1.10 7.10 -24.47 -0.17 -1.27 16 19 C -0.12 -1.04 6.40 -24.90 -0.16 -1.20 16 20 C 0.13 1.88 3.47 -68.11 -0.24 1.65 16 21 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 22 C 0.50 8.15 6.77 -10.98 -0.07 8.08 16 23 N -0.86 -9.45 8.81 31.22 0.28 -9.18 16 24 O -0.51 -11.04 14.72 -17.38 -0.26 -11.29 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.08 1.63 6.59 -51.93 -0.34 1.29 16 28 H 0.06 0.91 7.61 -51.93 -0.40 0.51 16 29 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 30 H 0.03 0.86 7.61 -51.92 -0.40 0.47 16 31 H 0.03 0.84 8.00 -51.93 -0.42 0.42 16 32 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.65 7.84 -51.93 -0.41 0.24 16 39 H 0.40 2.86 8.81 -40.82 -0.36 2.50 16 40 H 0.40 4.09 8.93 -40.82 -0.36 3.72 16 LS Contribution 339.66 15.07 5.12 5.12 Total: -1.00 -38.44 339.66 -9.04 -47.48 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -5.97 Total: 2.14 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.73 Total: 1.49 kcal Atomic # 7 Polarization: -73.72 SS G_CDS: 0.35 Total: -73.37 kcal Atomic # 8 Polarization: -58.82 SS G_CDS: -2.14 Total: -60.96 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 61.58 SS G_CDS: -0.63 Total: 60.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -38.44 -9.04 -47.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336900402.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.131 kcal (2) G-P(sol) polarization free energy of solvation -38.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds