Wall clock time and date at job start Fri Apr 10 2020 17:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47426 * 2 1 4 4 C 1.46499 * 119.99537 * 274.99645 * 3 2 1 5 5 C 1.50692 * 109.47616 * 286.16735 * 4 3 2 6 6 H 1.08002 * 119.99992 * 4.64783 * 5 4 3 7 7 C 1.37875 * 120.00423 * 184.64080 * 5 4 3 8 8 N 1.31520 * 120.00288 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00016 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47601 * 89.99446 * 9 7 5 11 11 H 1.48501 * 109.47287 * 209.99722 * 9 7 5 12 12 H 1.48507 * 109.46867 * 329.99430 * 9 7 5 13 13 S 1.65599 * 120.00184 * 94.99412 * 3 2 1 14 14 O 1.42102 * 106.39985 * 143.37761 * 13 3 2 15 15 O 1.42095 * 106.40232 * 10.46343 * 13 3 2 16 16 N 1.65600 * 107.22070 * 256.91919 * 13 3 2 17 17 C 1.46494 * 119.99786 * 67.19209 * 16 13 3 18 18 H 1.09000 * 110.85919 * 8.42847 * 17 16 13 19 19 C 1.54631 * 110.96875 * 244.63854 * 17 16 13 20 20 C 1.51279 * 104.19942 * 266.68035 * 19 17 16 21 21 O 1.21276 * 124.94623 * 163.77908 * 20 19 17 22 22 N 1.34416 * 110.11353 * 343.75086 * 20 19 17 23 23 C 1.46503 * 124.35073 * 179.57203 * 22 20 19 24 24 C 1.46768 * 111.30383 * 359.58923 * 22 20 19 25 25 H 1.09001 * 109.47498 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47226 * 300.00233 * 1 2 3 27 27 H 1.09003 * 109.47188 * 60.00093 * 1 2 3 28 28 H 1.08995 * 109.47143 * 239.99257 * 2 1 3 29 29 H 1.09003 * 109.47188 * 119.99906 * 2 1 3 30 30 H 1.09007 * 109.47492 * 46.17396 * 4 3 2 31 31 H 1.09003 * 109.47072 * 166.16715 * 4 3 2 32 32 H 0.96998 * 120.00040 * 180.02562 * 8 7 5 33 33 H 0.96993 * 119.99514 * 247.19300 * 16 13 3 34 34 H 1.08999 * 110.48347 * 25.36196 * 19 17 16 35 35 H 1.09006 * 110.48519 * 147.86895 * 19 17 16 36 36 H 1.09001 * 109.46803 * 359.96809 * 23 22 20 37 37 H 1.08996 * 109.47042 * 119.97370 * 23 22 20 38 38 H 1.09003 * 109.46709 * 239.97414 * 23 22 20 39 39 H 1.09005 * 110.24263 * 258.01943 * 24 22 20 40 40 H 1.08994 * 110.24616 * 136.01564 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1085 -1.2640 5 6 3.3574 1.5875 -2.0133 6 1 3.9112 0.7445 -1.6270 7 6 3.7477 2.1868 -3.1921 8 7 4.7939 1.7318 -3.8463 9 14 2.7903 3.6452 -3.8600 10 1 3.3643 4.9037 -3.3195 11 1 2.8778 3.6578 -5.3423 12 1 1.3676 3.5334 -3.4490 13 16 2.4121 2.1202 1.4287 14 8 3.5423 2.9383 1.1590 15 8 2.4080 1.1032 2.4210 16 7 1.1703 3.1482 1.8074 17 6 -0.1464 2.6090 2.1561 18 1 -0.1057 1.5252 2.2646 19 6 -1.2078 3.0209 1.1097 20 6 -1.8131 4.2874 1.6738 21 8 -2.4795 5.0798 1.0424 22 7 -1.5053 4.4062 2.9768 23 6 -1.9252 5.5231 3.8269 24 6 -0.6940 3.2736 3.4386 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.2620 1.9644 -1.8674 31 1 2.2914 3.1708 -1.0591 32 1 5.0686 2.1537 -4.6754 33 1 1.3148 4.1073 1.7984 34 1 -0.7373 3.2189 0.1467 35 1 -1.9666 2.2446 1.0101 36 1 -2.5153 6.2257 3.2384 37 1 -2.5279 5.1446 4.6525 38 1 -1.0448 6.0299 4.2221 39 1 -1.3123 2.5686 3.9943 40 1 0.1281 3.6273 4.0606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336907566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:25 Heat of formation + Delta-G solvation = -98.928802 kcal Electronic energy + Delta-G solvation = -24750.798516 eV Core-core repulsion = 21113.885575 eV Total energy + Delta-G solvation = -3636.912941 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.65719 -37.16792 -36.74333 -36.25584 -35.38789 -34.61726 -32.61993 -31.06298 -30.30705 -27.71155 -27.22883 -26.50900 -23.07307 -22.06287 -21.61116 -19.78788 -19.18089 -17.68694 -17.25540 -17.02728 -16.72072 -16.48049 -15.81111 -15.53042 -15.02987 -14.30790 -14.24828 -13.93180 -13.79042 -13.61773 -13.26030 -12.87086 -12.77123 -12.56231 -12.51123 -12.23064 -12.16953 -12.05894 -11.85973 -11.69583 -11.56390 -11.43633 -11.18990 -10.93596 -10.57871 -10.39237 -10.28409 -10.12237 -9.63705 -9.57575 -8.99421 -8.62699 -8.21944 -6.12029 -4.11615 0.97689 2.41208 2.76261 3.19170 3.27099 3.31491 3.34997 3.87003 4.06247 4.18425 4.35599 4.51543 4.68971 4.82639 5.00784 5.03536 5.08544 5.17580 5.22101 5.30834 5.34972 5.43791 5.59182 5.61991 5.66493 5.75838 5.94464 6.17029 6.20790 6.43354 6.50196 6.70831 6.82762 6.86179 7.02683 7.33754 7.54858 7.96725 8.45148 8.93068 9.47334 11.01232 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.005551 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.952222 B = 5042.912058 C = 5738.052427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.116 3.884 3 N -0.984 5.984 4 C 0.229 3.771 5 C -0.531 4.531 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.894 5.894 9 Si 0.869 3.131 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.264 1.264 13 S 2.778 3.222 14 O -0.962 6.962 15 O -0.990 6.990 16 N -1.124 6.124 17 C 0.142 3.858 18 H 0.126 0.874 19 C -0.174 4.174 20 C 0.519 3.481 21 O -0.532 6.532 22 N -0.626 5.626 23 C 0.093 3.907 24 C 0.095 3.905 25 H 0.063 0.937 26 H 0.047 0.953 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.031 0.969 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.415 0.585 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.280 1.128 15.098 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.010 4.010 3 N -0.825 5.825 4 C 0.106 3.894 5 C -0.570 4.570 6 H 0.098 0.902 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.696 3.304 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.786 3.214 14 O -0.946 6.946 15 O -0.974 6.974 16 N -0.881 5.881 17 C 0.033 3.967 18 H 0.143 0.857 19 C -0.216 4.216 20 C 0.308 3.692 21 O -0.409 6.409 22 N -0.361 5.361 23 C -0.049 4.049 24 C -0.030 4.030 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.248 0.752 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.759 1.310 15.165 20.518 hybrid contribution -0.615 1.340 -0.694 1.629 sum -14.375 2.650 14.471 20.568 Atomic orbital electron populations 1.22393 0.97371 1.01937 1.01747 1.21197 0.92979 0.82674 1.04161 1.57478 1.81173 1.21658 1.22220 1.19394 0.98077 0.90884 0.81091 1.21307 1.11653 1.17601 1.06449 0.90200 1.24866 0.94723 0.96765 0.96514 1.69888 1.25131 1.41366 1.16797 0.86972 0.81004 0.83798 0.78660 1.19847 1.20911 1.18892 1.02138 0.73127 0.73055 0.73113 1.93667 1.46544 1.69351 1.84993 1.93539 1.86921 1.58332 1.58585 1.56390 1.24713 1.21380 1.85571 1.21637 0.82676 0.99545 0.92868 0.85689 1.22959 0.99881 0.97177 1.01599 1.20907 0.79304 0.87313 0.81725 1.90729 1.39791 1.47097 1.63234 1.48183 1.53732 1.23468 1.10758 1.21560 1.00280 0.88556 0.94476 1.22527 0.95281 0.88365 0.96842 0.91789 0.93456 0.91820 0.89008 0.90241 0.95157 0.95515 0.92480 0.75238 0.86556 0.86526 0.89955 0.92059 0.92003 0.89630 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 10.24 37.16 0.38 -1.64 16 2 C 0.12 1.79 6.25 -4.05 -0.03 1.76 16 3 N -0.98 -17.96 2.87 -115.67 -0.33 -18.29 16 4 C 0.23 5.03 4.38 -5.20 -0.02 5.01 16 5 C -0.53 -14.48 9.56 -34.45 -0.33 -14.81 16 6 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 8 N -0.89 -26.94 13.96 55.43 0.77 -26.17 16 9 Si 0.87 20.85 27.38 -169.99 -4.65 16.19 16 10 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 12 H -0.26 -5.88 6.68 56.52 0.38 -5.51 16 13 S 2.78 48.05 5.96 -107.50 -0.64 47.40 16 14 O -0.96 -21.17 17.41 -57.17 -1.00 -22.17 16 15 O -0.99 -17.52 15.94 -57.17 -0.91 -18.43 16 16 N -1.12 -13.98 5.54 -3.51 -0.02 -14.00 16 17 C 0.14 1.38 3.34 -66.30 -0.22 1.16 16 18 H 0.13 1.09 5.52 -51.93 -0.29 0.80 16 19 C -0.17 -1.79 5.96 -26.74 -0.16 -1.95 16 20 C 0.52 6.46 8.02 -10.86 -0.09 6.37 16 21 O -0.53 -8.79 17.35 5.56 0.10 -8.69 16 22 N -0.63 -6.00 3.33 -180.28 -0.60 -6.60 16 23 C 0.09 0.71 11.14 59.85 0.67 1.37 16 24 C 0.09 0.74 7.07 -3.12 -0.02 0.71 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.45 4.53 -51.93 -0.24 0.22 16 27 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 28 H 0.09 1.54 7.86 -51.93 -0.41 1.13 16 29 H 0.08 1.17 6.89 -51.93 -0.36 0.81 16 30 H 0.03 0.63 7.48 -51.93 -0.39 0.25 16 31 H 0.03 0.60 6.80 -51.93 -0.35 0.24 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.41 4.78 8.96 -34.46 -0.31 4.47 16 34 H 0.12 1.36 8.09 -51.93 -0.42 0.94 16 35 H 0.12 0.93 8.09 -51.93 -0.42 0.50 16 36 H 0.08 0.73 7.53 -51.93 -0.39 0.34 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 LS Contribution 338.95 15.07 5.11 5.11 Total: -1.00 -36.37 338.95 -7.78 -44.15 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -5.68 Total: 1.49 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 0.08 Total: 0.00 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: -0.18 Total: -65.05 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -1.81 Total: -49.29 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.65 Total: 16.19 kcal Atomic # 16 Polarization: 48.05 SS G_CDS: -0.64 Total: 47.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.37 -7.78 -44.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.780 kcal (2) G-P(sol) polarization free energy of solvation -36.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds