Wall clock time and date at job start Fri Apr 10 2020 17:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46497 * 109.47426 * 2 1 4 4 C 1.46499 * 119.99537 * 274.99645 * 3 2 1 5 5 C 1.50692 * 109.47616 * 286.16735 * 4 3 2 6 6 H 1.08002 * 119.99992 * 4.64783 * 5 4 3 7 7 C 1.37875 * 120.00423 * 184.64080 * 5 4 3 8 8 N 1.31520 * 120.00288 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00016 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47601 * 89.99446 * 9 7 5 11 11 H 1.48501 * 109.47287 * 209.99722 * 9 7 5 12 12 H 1.48507 * 109.46867 * 329.99430 * 9 7 5 13 13 S 1.65599 * 120.00184 * 94.99412 * 3 2 1 14 14 O 1.42102 * 106.39985 * 143.37761 * 13 3 2 15 15 O 1.42095 * 106.40232 * 10.46343 * 13 3 2 16 16 N 1.65600 * 107.22070 * 256.91919 * 13 3 2 17 17 C 1.46494 * 119.99786 * 67.19209 * 16 13 3 18 18 H 1.09000 * 110.85919 * 8.42847 * 17 16 13 19 19 C 1.54631 * 110.96875 * 244.63854 * 17 16 13 20 20 C 1.51279 * 104.19942 * 266.68035 * 19 17 16 21 21 O 1.21276 * 124.94623 * 163.77908 * 20 19 17 22 22 N 1.34416 * 110.11353 * 343.75086 * 20 19 17 23 23 C 1.46503 * 124.35073 * 179.57203 * 22 20 19 24 24 C 1.46768 * 111.30383 * 359.58923 * 22 20 19 25 25 H 1.09001 * 109.47498 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47226 * 300.00233 * 1 2 3 27 27 H 1.09003 * 109.47188 * 60.00093 * 1 2 3 28 28 H 1.08995 * 109.47143 * 239.99257 * 2 1 3 29 29 H 1.09003 * 109.47188 * 119.99906 * 2 1 3 30 30 H 1.09007 * 109.47492 * 46.17396 * 4 3 2 31 31 H 1.09003 * 109.47072 * 166.16715 * 4 3 2 32 32 H 0.96998 * 120.00040 * 180.02562 * 8 7 5 33 33 H 0.96993 * 119.99514 * 247.19300 * 16 13 3 34 34 H 1.08999 * 110.48347 * 25.36196 * 19 17 16 35 35 H 1.09006 * 110.48519 * 147.86895 * 19 17 16 36 36 H 1.09001 * 109.46803 * 359.96809 * 23 22 20 37 37 H 1.08996 * 109.47042 * 119.97370 * 23 22 20 38 38 H 1.09003 * 109.46709 * 239.97414 * 23 22 20 39 39 H 1.09005 * 110.24263 * 258.01943 * 24 22 20 40 40 H 1.08994 * 110.24616 * 136.01564 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1085 -1.2640 5 6 3.3574 1.5875 -2.0133 6 1 3.9112 0.7445 -1.6270 7 6 3.7477 2.1868 -3.1921 8 7 4.7939 1.7318 -3.8463 9 14 2.7903 3.6452 -3.8600 10 1 3.3643 4.9037 -3.3195 11 1 2.8778 3.6578 -5.3423 12 1 1.3676 3.5334 -3.4490 13 16 2.4121 2.1202 1.4287 14 8 3.5423 2.9383 1.1590 15 8 2.4080 1.1032 2.4210 16 7 1.1703 3.1482 1.8074 17 6 -0.1464 2.6090 2.1561 18 1 -0.1057 1.5252 2.2646 19 6 -1.2078 3.0209 1.1097 20 6 -1.8131 4.2874 1.6738 21 8 -2.4795 5.0798 1.0424 22 7 -1.5053 4.4062 2.9768 23 6 -1.9252 5.5231 3.8269 24 6 -0.6940 3.2736 3.4386 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.2620 1.9644 -1.8674 31 1 2.2914 3.1708 -1.0591 32 1 5.0686 2.1537 -4.6754 33 1 1.3148 4.1073 1.7984 34 1 -0.7373 3.2189 0.1467 35 1 -1.9666 2.2446 1.0101 36 1 -2.5153 6.2257 3.2384 37 1 -2.5279 5.1446 4.6525 38 1 -1.0448 6.0299 4.2221 39 1 -1.3123 2.5686 3.9943 40 1 0.1281 3.6273 4.0606 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336907566.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:23 Heat of formation + Delta-G solvation = -129.439460 kcal Electronic energy + Delta-G solvation = -24752.121557 eV Core-core repulsion = 21113.885575 eV Total energy + Delta-G solvation = -3638.235982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.48301 -38.41821 -37.94810 -37.69825 -36.88988 -35.49727 -34.64277 -32.01197 -31.65104 -28.94103 -28.42337 -27.23014 -24.63038 -23.18295 -22.81210 -20.60330 -20.41198 -19.13048 -18.91109 -18.31455 -18.01608 -17.38884 -17.07556 -16.58183 -16.20966 -15.91704 -15.40737 -15.02244 -14.73689 -14.58829 -14.53422 -14.36086 -13.91855 -13.74576 -13.58828 -13.47519 -13.21615 -13.18904 -13.09904 -13.00491 -12.84478 -12.70801 -12.58505 -12.37110 -12.17568 -12.03828 -11.67906 -11.56207 -11.11275 -10.77368 -10.60106 -9.78591 -9.70863 -8.28302 -6.32370 -0.38986 1.36489 1.38623 1.46448 1.52691 1.95143 2.07192 2.34252 2.57608 3.06631 3.29402 3.35965 3.48920 3.77193 3.92889 4.06607 4.18593 4.40449 4.50542 4.51838 4.53426 4.68079 4.71812 4.74653 4.86654 4.88962 4.92887 5.03605 5.11858 5.17669 5.45515 5.49778 5.52245 5.54797 5.78000 6.00007 6.05500 6.33300 6.72204 7.11463 7.30527 8.88898 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.015960 B = 0.005551 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.952222 B = 5042.912058 C = 5738.052427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.107 3.893 3 N -0.991 5.991 4 C 0.237 3.763 5 C -0.536 4.536 6 H 0.036 0.964 7 C 0.011 3.989 8 N -0.947 5.947 9 Si 0.933 3.067 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.230 1.230 13 S 2.796 3.204 14 O -1.016 7.016 15 O -0.994 6.994 16 N -1.109 6.109 17 C 0.134 3.866 18 H 0.143 0.857 19 C -0.170 4.170 20 C 0.509 3.491 21 O -0.584 6.584 22 N -0.621 5.621 23 C 0.087 3.913 24 C 0.096 3.904 25 H 0.087 0.913 26 H 0.070 0.930 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.266 0.734 33 H 0.421 0.579 34 H 0.103 0.897 35 H 0.145 0.855 36 H 0.063 0.937 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.121 0.879 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.092 1.359 16.956 24.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.832 5.832 4 C 0.112 3.888 5 C -0.575 4.575 6 H 0.054 0.946 7 C -0.187 4.187 8 N -0.588 5.588 9 Si 0.755 3.245 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.153 1.153 13 S 2.804 3.196 14 O -1.000 7.000 15 O -0.977 6.977 16 N -0.870 5.870 17 C 0.026 3.974 18 H 0.160 0.840 19 C -0.212 4.212 20 C 0.299 3.701 21 O -0.465 6.465 22 N -0.355 5.355 23 C -0.054 4.054 24 C -0.028 4.028 25 H 0.105 0.895 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.256 0.744 34 H 0.121 0.879 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.139 0.861 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.578 1.502 17.084 23.853 hybrid contribution 0.297 1.175 -1.122 1.652 sum -16.281 2.677 15.962 22.957 Atomic orbital electron populations 1.22337 0.93744 1.03846 1.02749 1.21396 0.95999 0.81073 1.03328 1.57422 1.81706 1.22840 1.21196 1.19122 0.96278 0.90995 0.82355 1.21678 1.12881 1.16160 1.06789 0.94567 1.25822 0.95814 1.00060 0.97025 1.70054 1.27531 1.43518 1.17650 0.85945 0.81271 0.79346 0.77901 1.19938 1.20632 1.15278 1.01350 0.72856 0.72689 0.72685 1.93596 1.50079 1.70621 1.85656 1.93527 1.87161 1.58726 1.58309 1.55936 1.25023 1.21060 1.84982 1.21993 0.80819 1.00666 0.93898 0.83961 1.22980 1.00389 0.97020 1.00812 1.21284 0.78907 0.87452 0.82505 1.90701 1.42345 1.48905 1.64555 1.48332 1.52847 1.24126 1.10157 1.21725 1.01112 0.88040 0.94501 1.22718 0.95926 0.88264 0.95848 0.89460 0.91113 0.92132 0.91446 0.89650 0.93047 0.95254 0.92478 0.74434 0.87893 0.83703 0.91792 0.89553 0.90583 0.86098 0.88076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 10.24 71.98 0.74 -2.58 16 2 C 0.11 3.18 6.25 86.38 0.54 3.72 16 3 N -0.99 -35.28 2.87 -519.87 -1.49 -36.78 16 4 C 0.24 10.25 4.38 85.63 0.37 10.63 16 5 C -0.54 -29.97 9.56 25.60 0.24 -29.73 16 6 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 7 C 0.01 0.62 5.47 84.65 0.46 1.08 16 8 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 9 Si 0.93 42.74 27.38 68.60 1.88 44.62 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.23 -9.20 6.68 99.48 0.66 -8.54 16 13 S 2.80 93.36 5.96 -56.49 -0.34 93.03 16 14 O -1.02 -44.98 17.41 -128.00 -2.23 -47.21 16 15 O -0.99 -33.27 15.94 -128.00 -2.04 -35.31 16 16 N -1.11 -24.77 5.54 -165.00 -0.91 -25.69 16 17 C 0.13 2.08 3.34 46.05 0.15 2.23 16 18 H 0.14 1.77 5.52 -2.39 -0.01 1.76 16 19 C -0.17 -2.92 5.96 30.59 0.18 -2.74 16 20 C 0.51 11.52 8.02 87.90 0.71 12.23 16 21 O -0.58 -18.84 17.35 -3.02 -0.05 -18.89 16 22 N -0.62 -9.90 3.33 -842.89 -2.81 -12.71 16 23 C 0.09 1.09 11.14 127.77 1.42 2.51 16 24 C 0.10 1.06 7.07 86.83 0.61 1.67 16 25 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 1.04 4.53 -2.39 -0.01 1.03 16 27 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 28 H 0.07 2.30 7.86 -2.39 -0.02 2.28 16 29 H 0.09 2.40 6.89 -2.39 -0.02 2.38 16 30 H 0.05 2.03 7.48 -2.38 -0.02 2.01 16 31 H 0.03 1.27 6.80 -2.39 -0.02 1.25 16 32 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.42 8.78 8.96 -96.76 -0.87 7.91 16 34 H 0.10 2.12 8.09 -2.39 -0.02 2.11 16 35 H 0.15 1.65 8.09 -2.38 -0.02 1.63 16 36 H 0.06 1.06 7.53 -2.39 -0.02 1.04 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 Total: -1.00 -83.08 338.95 -2.11 -85.19 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.15 Total: 13.60 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.44 Total: -0.98 kcal Atomic # 7 Polarization: -129.14 SS G_CDS: -4.92 Total: -134.06 kcal Atomic # 8 Polarization: -97.09 SS G_CDS: -4.32 Total: -101.41 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.88 Total: 44.62 kcal Atomic # 16 Polarization: 93.36 SS G_CDS: -0.34 Total: 93.03 kcal Total: -83.08 -2.11 -85.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907566.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.252 kcal (2) G-P(sol) polarization free energy of solvation -83.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds