Wall clock time and date at job start Fri Apr 10 2020 17:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47424 * 2 1 4 4 C 1.46499 * 119.99999 * 84.99501 * 3 2 1 5 5 C 1.50701 * 109.46992 * 85.00120 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 S 1.65593 * 119.99605 * 264.99786 * 3 2 1 14 14 O 1.42100 * 106.40784 * 23.53826 * 13 3 2 15 15 O 1.42105 * 106.40278 * 156.45824 * 13 3 2 16 16 N 1.65598 * 107.21993 * 269.99784 * 13 3 2 17 17 C 1.46502 * 120.00204 * 65.00171 * 16 13 3 18 18 H 1.08997 * 110.85040 * 335.70145 * 17 16 13 19 19 C 1.54626 * 110.97016 * 99.49227 * 17 16 13 20 20 C 1.51275 * 104.19537 * 142.91893 * 19 17 16 21 21 O 1.21281 * 124.94084 * 163.77814 * 20 19 17 22 22 N 1.34414 * 110.11614 * 343.75165 * 20 19 17 23 23 C 1.46501 * 124.34961 * 179.58857 * 22 20 19 24 24 C 1.46820 * 111.31684 * 359.61609 * 22 20 19 25 25 H 1.08995 * 109.47366 * 300.00765 * 1 2 3 26 26 H 1.09003 * 109.46676 * 60.00308 * 1 2 3 27 27 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47366 * 239.99234 * 2 1 3 29 29 H 1.09003 * 109.46676 * 119.99692 * 2 1 3 30 30 H 1.09002 * 109.47391 * 325.00111 * 4 3 2 31 31 H 1.09001 * 109.46813 * 205.00167 * 4 3 2 32 32 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 33 33 H 0.97004 * 119.99875 * 245.00508 * 16 13 3 34 34 H 1.09003 * 110.48140 * 261.59631 * 19 17 16 35 35 H 1.08996 * 110.48456 * 24.10494 * 19 17 16 36 36 H 1.09000 * 109.47390 * 0.02562 * 23 22 20 37 37 H 1.09007 * 109.47094 * 120.01731 * 23 22 20 38 38 H 1.08996 * 109.47497 * 240.01659 * 23 22 20 39 39 H 1.08999 * 110.24376 * 257.98657 * 24 22 20 40 40 H 1.09012 * 110.27955 * 135.97109 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.4947 1.7888 1.8824 6 1 4.1724 1.1116 1.3837 7 6 3.8529 2.3614 3.0844 8 7 3.0279 3.1863 3.6915 9 14 5.5097 1.9654 3.8507 10 1 6.5230 2.9384 3.3693 11 1 5.4045 2.0512 5.3295 12 1 5.9190 0.5917 3.4626 13 16 2.4123 2.1200 -1.4287 14 8 1.6870 1.4413 -2.4448 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7137 17 6 4.4658 0.4411 -1.9568 18 1 3.7765 -0.2781 -1.5145 19 6 4.6454 0.1774 -3.4697 20 6 5.8636 -0.7160 -3.5486 21 8 6.1798 -1.3756 -4.5160 22 7 6.5449 -0.6720 -2.3907 23 6 7.7719 -1.4268 -2.1244 24 6 5.9012 0.2291 -1.4267 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3617 1.8098 1.9453 31 1 2.0922 3.1803 1.0755 32 1 3.2797 3.5889 4.5373 33 1 4.6542 2.5426 -1.7196 34 1 3.7712 -0.3329 -3.8743 35 1 4.8203 1.1124 -4.0018 36 1 8.0339 -2.0162 -3.0031 37 1 8.5823 -0.7342 -1.8968 38 1 7.6127 -2.0913 -1.2753 39 1 6.4327 1.1798 -1.3862 40 1 5.8744 -0.2313 -0.4389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336907570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:27 Heat of formation + Delta-G solvation = -107.535271 kcal Electronic energy + Delta-G solvation = -24625.855983 eV Core-core repulsion = 20988.569837 eV Total energy + Delta-G solvation = -3637.286146 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.47881 -37.02439 -36.64362 -36.11961 -35.31656 -34.57753 -32.79302 -30.86630 -30.01254 -27.50443 -26.70806 -26.22307 -23.25344 -21.90085 -21.77484 -19.78487 -19.12630 -17.39603 -17.09421 -16.76340 -16.51259 -16.28316 -15.81541 -15.41145 -14.78989 -14.38590 -13.97186 -13.85861 -13.76703 -13.51819 -13.38183 -13.00750 -12.53620 -12.40428 -12.23843 -12.14052 -12.05553 -11.76604 -11.60028 -11.50163 -11.47892 -11.30955 -11.12146 -11.04003 -10.56711 -10.46746 -10.21459 -10.08782 -9.87177 -9.32856 -8.87015 -8.57154 -8.17071 -6.18531 -4.25551 1.15084 2.49557 2.86078 3.17490 3.23445 3.26121 3.34083 3.97659 4.27794 4.31680 4.38862 4.66265 4.75086 4.93930 5.15920 5.17014 5.20762 5.28027 5.42849 5.48299 5.49563 5.56081 5.69380 5.74275 5.80421 6.02347 6.06512 6.26063 6.33204 6.58075 6.60975 6.94569 7.05449 7.30347 7.37492 7.56994 7.77724 8.05293 8.07016 8.78536 9.40501 10.89553 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.006511 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.851764 B = 4299.700391 C = 5797.479823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.127 3.873 3 N -0.990 5.990 4 C 0.245 3.755 5 C -0.540 4.540 6 H 0.062 0.938 7 C 0.064 3.936 8 N -0.888 5.888 9 Si 0.894 3.106 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.785 3.215 14 O -0.993 6.993 15 O -0.975 6.975 16 N -1.114 6.114 17 C 0.153 3.847 18 H 0.107 0.893 19 C -0.173 4.173 20 C 0.521 3.479 21 O -0.537 6.537 22 N -0.623 5.623 23 C 0.092 3.908 24 C 0.097 3.903 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.265 0.735 33 H 0.417 0.583 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.210 -6.977 -7.712 11.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.832 5.832 4 C 0.123 3.877 5 C -0.579 4.579 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.199 1.199 13 S 2.792 3.208 14 O -0.977 6.977 15 O -0.959 6.959 16 N -0.871 5.871 17 C 0.044 3.956 18 H 0.125 0.875 19 C -0.215 4.215 20 C 0.309 3.691 21 O -0.414 6.414 22 N -0.358 5.358 23 C -0.049 4.049 24 C -0.027 4.027 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.250 0.750 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.696 -6.877 -8.571 11.594 hybrid contribution 1.574 -0.010 1.071 1.904 sum 5.270 -6.887 -7.501 11.466 Atomic orbital electron populations 1.22198 0.96716 1.01504 1.02530 1.21059 0.94029 0.82882 1.01975 1.57719 1.78353 1.22942 1.24228 1.19211 0.97371 0.92264 0.78835 1.21518 1.02173 1.28118 1.06095 0.91955 1.24962 0.97178 0.94861 0.96936 1.69927 1.35885 1.29697 1.17109 0.86582 0.84043 0.78609 0.78617 1.20584 1.21181 1.19905 1.01840 0.72715 0.73211 0.73012 1.93566 1.70420 1.76380 1.57307 1.93609 1.85487 1.30887 1.85911 1.56142 1.29893 1.12843 1.88207 1.21367 0.96133 0.84390 0.93755 0.87488 1.22956 0.98143 1.01781 0.98594 1.20896 0.84790 0.81429 0.82002 1.90706 1.72150 1.44289 1.34271 1.48213 1.26542 1.45685 1.15382 1.21574 0.85068 0.95854 1.02440 1.22460 0.92216 0.94718 0.93330 0.91979 0.92536 0.92292 0.92055 0.90040 0.94275 0.93122 0.92540 0.74951 0.86962 0.86934 0.89977 0.92005 0.91832 0.89877 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 10.24 37.16 0.38 -2.10 16 2 C 0.13 1.96 5.82 -4.04 -0.02 1.94 16 3 N -0.99 -18.31 2.82 -115.66 -0.33 -18.64 16 4 C 0.25 5.63 5.43 -5.19 -0.03 5.60 16 5 C -0.54 -12.96 9.38 -34.44 -0.32 -13.28 16 6 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 9 Si 0.89 19.40 29.54 -169.99 -5.02 14.38 16 10 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 11 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 13 S 2.78 49.41 6.04 -107.50 -0.65 48.76 16 14 O -0.99 -18.16 16.87 -57.17 -0.96 -19.12 16 15 O -0.97 -20.99 16.69 -57.17 -0.95 -21.95 16 16 N -1.11 -15.35 5.64 -3.51 -0.02 -15.37 16 17 C 0.15 1.85 3.71 -66.30 -0.25 1.60 16 18 H 0.11 1.25 6.35 -51.93 -0.33 0.92 16 19 C -0.17 -2.06 6.59 -26.75 -0.18 -2.24 16 20 C 0.52 7.05 8.02 -10.87 -0.09 6.96 16 21 O -0.54 -9.06 17.35 5.56 0.10 -8.96 16 22 N -0.62 -7.14 3.33 -180.24 -0.60 -7.74 16 23 C 0.09 0.86 11.14 59.85 0.67 1.52 16 24 C 0.10 1.06 7.08 -3.09 -0.02 1.04 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.82 6.21 -51.93 -0.32 0.49 16 29 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 30 H 0.04 0.95 8.11 -51.93 -0.42 0.52 16 31 H 0.05 1.30 6.91 -51.93 -0.36 0.94 16 32 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 33 H 0.42 5.07 8.65 -34.47 -0.30 4.77 16 34 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.11 1.24 8.08 -51.93 -0.42 0.82 16 36 H 0.08 0.81 7.53 -51.93 -0.39 0.42 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 40 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 346.70 15.07 5.22 5.22 Total: -1.00 -32.40 346.70 -8.31 -40.71 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -5.87 Total: 3.68 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 0.04 Total: 2.57 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.21 Total: -65.30 kcal Atomic # 8 Polarization: -48.21 SS G_CDS: -1.82 Total: -50.03 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 49.41 SS G_CDS: -0.65 Total: 48.76 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.40 -8.31 -40.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.823 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds