Wall clock time and date at job start Fri Apr 10 2020 17:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47424 * 2 1 4 4 C 1.46499 * 119.99999 * 84.99501 * 3 2 1 5 5 C 1.50701 * 109.46992 * 85.00120 * 4 3 2 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47094 * 90.00289 * 9 7 5 11 11 H 1.48505 * 109.47195 * 210.00171 * 9 7 5 12 12 H 1.48493 * 109.47449 * 330.00136 * 9 7 5 13 13 S 1.65593 * 119.99605 * 264.99786 * 3 2 1 14 14 O 1.42100 * 106.40784 * 23.53826 * 13 3 2 15 15 O 1.42105 * 106.40278 * 156.45824 * 13 3 2 16 16 N 1.65598 * 107.21993 * 269.99784 * 13 3 2 17 17 C 1.46502 * 120.00204 * 65.00171 * 16 13 3 18 18 H 1.08997 * 110.85040 * 335.70145 * 17 16 13 19 19 C 1.54626 * 110.97016 * 99.49227 * 17 16 13 20 20 C 1.51275 * 104.19537 * 142.91893 * 19 17 16 21 21 O 1.21281 * 124.94084 * 163.77814 * 20 19 17 22 22 N 1.34414 * 110.11614 * 343.75165 * 20 19 17 23 23 C 1.46501 * 124.34961 * 179.58857 * 22 20 19 24 24 C 1.46820 * 111.31684 * 359.61609 * 22 20 19 25 25 H 1.08995 * 109.47366 * 300.00765 * 1 2 3 26 26 H 1.09003 * 109.46676 * 60.00308 * 1 2 3 27 27 H 1.08994 * 109.47404 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47366 * 239.99234 * 2 1 3 29 29 H 1.09003 * 109.46676 * 119.99692 * 2 1 3 30 30 H 1.09002 * 109.47391 * 325.00111 * 4 3 2 31 31 H 1.09001 * 109.46813 * 205.00167 * 4 3 2 32 32 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 33 33 H 0.97004 * 119.99875 * 245.00508 * 16 13 3 34 34 H 1.09003 * 110.48140 * 261.59631 * 19 17 16 35 35 H 1.08996 * 110.48456 * 24.10494 * 19 17 16 36 36 H 1.09000 * 109.47390 * 0.02562 * 23 22 20 37 37 H 1.09007 * 109.47094 * 120.01731 * 23 22 20 38 38 H 1.08996 * 109.47497 * 240.01659 * 23 22 20 39 39 H 1.08999 * 110.24376 * 257.98657 * 24 22 20 40 40 H 1.09012 * 110.27955 * 135.97109 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2639 5 6 3.4947 1.7888 1.8824 6 1 4.1724 1.1116 1.3837 7 6 3.8529 2.3614 3.0844 8 7 3.0279 3.1863 3.6915 9 14 5.5097 1.9654 3.8507 10 1 6.5230 2.9384 3.3693 11 1 5.4045 2.0512 5.3295 12 1 5.9190 0.5917 3.4626 13 16 2.4123 2.1200 -1.4287 14 8 1.6870 1.4413 -2.4448 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7137 17 6 4.4658 0.4411 -1.9568 18 1 3.7765 -0.2781 -1.5145 19 6 4.6454 0.1774 -3.4697 20 6 5.8636 -0.7160 -3.5486 21 8 6.1798 -1.3756 -4.5160 22 7 6.5449 -0.6720 -2.3907 23 6 7.7719 -1.4268 -2.1244 24 6 5.9012 0.2291 -1.4267 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.3617 1.8098 1.9453 31 1 2.0922 3.1803 1.0755 32 1 3.2797 3.5889 4.5373 33 1 4.6542 2.5426 -1.7196 34 1 3.7712 -0.3329 -3.8743 35 1 4.8203 1.1124 -4.0018 36 1 8.0339 -2.0162 -3.0031 37 1 8.5823 -0.7342 -1.8968 38 1 7.6127 -2.0913 -1.2753 39 1 6.4327 1.1798 -1.3862 40 1 5.8744 -0.2313 -0.4389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336907570.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:26 Heat of formation + Delta-G solvation = -132.477139 kcal Electronic energy + Delta-G solvation = -24626.937544 eV Core-core repulsion = 20988.569837 eV Total energy + Delta-G solvation = -3638.367706 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.46682 -38.35548 -37.92723 -37.61266 -36.84556 -35.60214 -34.62289 -31.86949 -31.46389 -28.43752 -28.41812 -27.10026 -24.90302 -23.25081 -22.85673 -20.84181 -20.37275 -18.75397 -18.54228 -18.21781 -17.90669 -17.42649 -17.07407 -16.61875 -16.24692 -15.68136 -15.30130 -14.97831 -14.73823 -14.66781 -14.64058 -14.48429 -13.74979 -13.57960 -13.38621 -13.30709 -13.23561 -13.17630 -13.12658 -12.98868 -12.77925 -12.71875 -12.61222 -12.35130 -12.16662 -12.04725 -11.66320 -11.54311 -11.23161 -10.53623 -10.43358 -9.77135 -9.74321 -8.09796 -6.23107 -0.27294 1.47287 1.49665 1.50435 1.59741 1.87404 2.11103 2.48613 2.62671 3.23179 3.30330 3.41937 3.46051 3.80406 3.83207 4.03649 4.33079 4.40876 4.48047 4.48711 4.54065 4.64406 4.70594 4.76459 4.88071 4.89727 5.00068 5.11115 5.20630 5.34625 5.46142 5.46959 5.59246 5.82435 5.93221 6.00671 6.15573 6.17794 6.90243 7.06021 7.47353 8.98543 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011872 B = 0.006511 C = 0.004829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.851764 B = 4299.700391 C = 5797.479823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.994 5.994 4 C 0.260 3.740 5 C -0.535 4.535 6 H 0.084 0.916 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.959 3.041 10 H -0.277 1.277 11 H -0.296 1.296 12 H -0.252 1.252 13 S 2.800 3.200 14 O -0.998 6.998 15 O -1.017 7.017 16 N -1.103 6.103 17 C 0.148 3.852 18 H 0.115 0.885 19 C -0.169 4.169 20 C 0.517 3.483 21 O -0.578 6.578 22 N -0.617 5.617 23 C 0.087 3.913 24 C 0.099 3.901 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.019 0.981 31 H 0.016 0.984 32 H 0.262 0.738 33 H 0.426 0.574 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.854 -8.568 -7.807 12.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.007 4.007 3 N -0.835 5.835 4 C 0.136 3.864 5 C -0.574 4.574 6 H 0.102 0.898 7 C -0.192 4.192 8 N -0.573 5.573 9 Si 0.784 3.216 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.175 1.175 13 S 2.808 3.192 14 O -0.981 6.981 15 O -1.001 7.001 16 N -0.863 5.863 17 C 0.039 3.961 18 H 0.133 0.867 19 C -0.211 4.211 20 C 0.306 3.694 21 O -0.458 6.458 22 N -0.351 5.351 23 C -0.054 4.054 24 C -0.025 4.025 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.262 0.738 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.114 0.886 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.347 -8.488 -8.665 13.256 hybrid contribution 1.040 0.457 1.049 1.546 sum 6.387 -8.031 -7.616 12.779 Atomic orbital electron populations 1.22204 0.96247 1.03167 1.01325 1.21345 0.94599 0.81315 1.03481 1.57600 1.79161 1.24027 1.22692 1.18730 0.96720 0.90758 0.80172 1.21905 1.02443 1.27351 1.05691 0.89821 1.25850 1.00702 0.94862 0.97819 1.70084 1.38138 1.31492 1.17623 0.85541 0.79653 0.79433 0.76934 1.20269 1.22223 1.17527 1.01181 0.73391 0.71994 0.72607 1.93557 1.71256 1.76171 1.57105 1.93554 1.86478 1.33676 1.86386 1.55755 1.28656 1.14218 1.87706 1.21550 0.97303 0.83181 0.94052 0.86680 1.22936 0.97660 1.01931 0.98588 1.21075 0.85221 0.81128 0.82000 1.90687 1.73252 1.46084 1.35780 1.48316 1.26779 1.45299 1.14711 1.21767 0.84651 0.96348 1.02683 1.22516 0.91263 0.95357 0.93366 0.93509 0.93411 0.89228 0.89310 0.89646 0.96293 0.96636 0.92875 0.73808 0.86895 0.86060 0.90949 0.90231 0.90105 0.88580 0.87708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.73 10.24 71.98 0.74 -3.99 16 2 C 0.12 3.41 5.82 86.38 0.50 3.91 16 3 N -0.99 -35.88 2.82 -519.84 -1.47 -37.35 16 4 C 0.26 12.04 5.43 85.63 0.47 12.51 16 5 C -0.53 -25.04 9.38 25.60 0.24 -24.80 16 6 H 0.08 3.47 7.81 -2.91 -0.02 3.45 16 7 C 0.01 0.33 5.46 84.66 0.46 0.79 16 8 N -0.93 -51.82 13.29 21.45 0.28 -51.53 16 9 Si 0.96 38.60 29.54 68.60 2.03 40.63 16 10 H -0.28 -10.95 7.11 99.48 0.71 -10.24 16 11 H -0.30 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 13 S 2.80 96.74 6.04 -56.49 -0.34 96.40 16 14 O -1.00 -34.98 16.87 -128.00 -2.16 -37.14 16 15 O -1.02 -44.19 16.69 -128.00 -2.14 -46.33 16 16 N -1.10 -28.03 5.64 -165.01 -0.93 -28.96 16 17 C 0.15 3.13 3.71 46.05 0.17 3.31 16 18 H 0.12 2.28 6.35 -2.39 -0.02 2.27 16 19 C -0.17 -3.67 6.59 30.58 0.20 -3.47 16 20 C 0.52 13.03 8.02 87.90 0.71 13.74 16 21 O -0.58 -18.99 17.35 -3.03 -0.05 -19.05 16 22 N -0.62 -12.39 3.33 -842.76 -2.81 -15.20 16 23 C 0.09 1.35 11.14 127.77 1.42 2.78 16 24 C 0.10 1.80 7.08 86.82 0.62 2.42 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 2.09 6.21 -2.39 -0.01 2.07 16 29 H 0.09 2.42 8.11 -2.39 -0.02 2.40 16 30 H 0.02 0.94 8.11 -2.39 -0.02 0.93 16 31 H 0.02 0.83 6.91 -2.39 -0.02 0.82 16 32 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 33 H 0.43 9.45 8.65 -96.74 -0.84 8.61 16 34 H 0.11 2.45 8.14 -2.39 -0.02 2.44 16 35 H 0.12 2.42 8.08 -2.39 -0.02 2.40 16 36 H 0.07 1.30 7.53 -2.39 -0.02 1.28 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.10 1.55 7.85 -2.39 -0.02 1.54 16 40 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -70.06 346.70 -1.85 -71.91 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: 0.21 Total: 19.43 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: 5.52 Total: 7.18 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -4.92 Total: -133.04 kcal Atomic # 8 Polarization: -98.17 SS G_CDS: -4.35 Total: -102.51 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Atomic # 16 Polarization: 96.74 SS G_CDS: -0.34 Total: 96.40 kcal Total: -70.06 -1.85 -71.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336907570.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.565 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds