Wall clock time and date at job start Fri Apr 10 2020 17:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47194 * 2 1 4 4 C 1.46504 * 119.99578 * 83.44248 * 3 2 1 5 5 C 1.50701 * 109.47170 * 85.00013 * 4 3 2 6 6 H 1.07997 * 119.99844 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99857 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99967 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47010 * 60.00286 * 9 7 5 11 11 H 1.48495 * 109.47184 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47366 * 300.00852 * 9 7 5 13 13 S 1.65594 * 120.00586 * 263.44411 * 3 2 1 14 14 O 1.42098 * 106.40373 * 210.79154 * 13 3 2 15 15 O 1.42107 * 106.40001 * 343.70932 * 13 3 2 16 16 N 1.65596 * 107.21936 * 97.24791 * 13 3 2 17 17 C 1.46504 * 119.99895 * 85.49206 * 16 13 3 18 18 C 1.46503 * 120.00191 * 265.48683 * 16 13 3 19 19 H 1.09004 * 110.43350 * 7.93796 * 18 16 13 20 20 C 1.54631 * 110.48783 * 245.39187 * 18 16 13 21 21 C 1.54480 * 101.76490 * 216.52418 * 20 18 16 22 22 N 1.46760 * 105.47292 * 25.41707 * 21 20 18 23 23 C 1.34657 * 111.34053 * 342.87015 * 22 21 20 24 24 O 1.21280 * 125.07642 * 180.52052 * 23 22 21 25 25 H 1.08994 * 109.47681 * 55.51372 * 1 2 3 26 26 H 1.09001 * 109.46907 * 295.51422 * 1 2 3 27 27 H 1.08999 * 109.46982 * 175.52282 * 1 2 3 28 28 H 1.08994 * 109.47741 * 120.00421 * 2 1 3 29 29 H 1.08998 * 109.46919 * 240.00681 * 2 1 3 30 30 H 1.08996 * 109.47091 * 205.00073 * 4 3 2 31 31 H 1.09004 * 109.47153 * 324.99867 * 4 3 2 32 32 H 0.96991 * 119.99907 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47464 * 89.99713 * 17 16 13 34 34 H 1.09003 * 109.46606 * 210.00327 * 17 16 13 35 35 H 1.09004 * 109.46888 * 329.99226 * 17 16 13 36 36 H 1.09003 * 110.96766 * 334.64392 * 20 18 16 37 37 H 1.08999 * 110.96449 * 98.36577 * 20 18 16 38 38 H 1.09003 * 110.24198 * 144.41894 * 21 20 18 39 39 H 1.09000 * 110.24407 * 266.32638 * 21 20 18 40 40 H 0.97002 * 124.34960 * 162.98256 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1259 2.1201 1.2605 5 6 3.4461 1.8059 1.9159 6 1 4.1361 1.1245 1.4408 7 6 3.7733 2.3894 3.1215 8 7 2.9332 3.2196 3.6999 9 14 5.4094 1.9994 3.9342 10 1 6.5184 2.3975 3.0303 11 1 5.5184 2.7484 5.2118 12 1 5.4919 0.5420 4.2067 13 16 2.4487 2.1074 -1.4246 14 8 3.4816 3.0306 -1.1084 15 8 2.6039 1.0635 -2.3762 16 7 1.1533 3.0087 -1.9264 17 6 0.9732 4.3739 -1.4263 18 6 0.1876 2.4410 -2.8704 19 1 0.3892 1.3818 -3.0303 20 6 0.2274 3.2082 -4.2124 21 6 -1.2618 3.2021 -4.6231 22 7 -2.0133 3.0752 -3.3689 23 6 -1.2250 2.6410 -2.3671 24 8 -1.5917 2.4407 -1.2286 25 1 -0.3634 0.5818 -0.8470 26 1 -0.3633 0.4427 0.9275 27 1 -0.3633 -1.0245 -0.0802 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 2.0648 3.1899 1.0609 31 1 1.3121 1.8272 1.9239 32 1 3.1633 3.6297 4.5482 33 1 1.4840 5.0736 -2.0877 34 1 -0.0900 4.6124 -1.3962 35 1 1.3913 4.4513 -0.4226 36 1 0.5884 4.2267 -4.0689 37 1 0.8371 2.6801 -4.9456 38 1 -1.5187 4.1356 -5.1240 39 1 -1.4695 2.3546 -5.2763 40 1 -2.9574 3.2766 -3.2737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336950459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:29 Heat of formation + Delta-G solvation = -99.238130 kcal Electronic energy + Delta-G solvation = -25233.055508 eV Core-core repulsion = 21596.129154 eV Total energy + Delta-G solvation = -3636.926354 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.51605 -36.71883 -36.54739 -35.93649 -35.34870 -35.15133 -32.59504 -30.45002 -29.82051 -27.72704 -26.53128 -25.42114 -23.03769 -22.16106 -21.59004 -20.41452 -18.55550 -17.61777 -17.50749 -16.77558 -16.31914 -15.98235 -15.84704 -15.19138 -14.43184 -14.31824 -14.03045 -13.84692 -13.60697 -13.30258 -13.15784 -12.85410 -12.62127 -12.40951 -12.33370 -12.00689 -11.83422 -11.58924 -11.49871 -11.33650 -11.24460 -11.15649 -10.91782 -10.84156 -10.41428 -10.30434 -10.10784 -9.91029 -9.69962 -9.28381 -8.82592 -8.37400 -7.97288 -6.00134 -4.03840 1.14815 2.48592 3.13034 3.37843 3.40885 3.41705 3.46113 3.97610 4.25104 4.33049 4.49384 4.62123 4.76414 4.93298 5.03353 5.22788 5.32687 5.35014 5.55937 5.62130 5.70204 5.75837 5.86271 5.92743 6.02362 6.12215 6.21411 6.44019 6.50063 6.67497 6.77759 6.81484 6.88014 7.33540 7.49612 7.69975 7.97569 8.14523 8.27446 8.98274 9.60709 11.08286 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.005067 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.421288 B = 5524.738736 C = 5661.554863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.986 5.986 4 C 0.261 3.739 5 C -0.526 4.526 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 S 2.777 3.223 14 O -0.956 6.956 15 O -0.997 6.997 16 N -0.994 5.994 17 C 0.095 3.905 18 C 0.119 3.881 19 H 0.131 0.869 20 C -0.147 4.147 21 C 0.104 3.896 22 N -0.736 5.736 23 C 0.509 3.491 24 O -0.500 6.500 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.322 0.169 -17.128 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.008 4.008 3 N -0.828 5.828 4 C 0.139 3.861 5 C -0.565 4.565 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.787 3.213 14 O -0.940 6.940 15 O -0.981 6.981 16 N -0.831 5.831 17 C -0.050 4.050 18 C 0.008 3.992 19 H 0.148 0.852 20 C -0.187 4.187 21 C -0.021 4.021 22 N -0.395 5.395 23 C 0.293 3.707 24 O -0.373 6.373 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.554 0.098 -16.761 19.293 hybrid contribution -0.045 0.081 0.734 0.740 sum -9.599 0.179 -16.027 18.682 Atomic orbital electron populations 1.22242 0.96581 1.00718 1.03126 1.21162 0.93574 0.82943 1.03136 1.57697 1.80505 1.21343 1.23217 1.19009 0.97455 0.90433 0.79198 1.21466 1.02644 1.27236 1.05201 0.92229 1.24922 0.97197 0.94901 0.96977 1.69917 1.35875 1.29912 1.17865 0.86587 0.84173 0.78371 0.78484 1.20024 1.21243 1.20222 1.02174 0.73415 0.72889 0.72846 1.93641 1.52086 1.64085 1.84147 1.93496 1.85851 1.56859 1.61910 1.58140 1.42905 1.25315 1.56701 1.21479 1.02028 0.81373 1.00147 1.21454 0.87687 1.00647 0.89417 0.85158 1.23073 0.95911 1.02951 0.96764 1.22041 0.91227 1.02491 0.86323 1.46212 1.12844 1.69396 1.11009 1.21150 0.88493 0.76139 0.84961 1.90811 1.78676 1.49690 1.18113 0.92630 0.91996 0.92891 0.89907 0.90788 0.95030 0.94555 0.92708 0.92557 0.91827 0.89830 0.88955 0.88357 0.90124 0.90767 0.75169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.23 37.16 0.38 -2.45 16 2 C 0.12 2.22 6.38 -4.04 -0.03 2.20 16 3 N -0.99 -21.45 2.83 -115.66 -0.33 -21.78 16 4 C 0.26 6.73 5.10 -5.19 -0.03 6.71 16 5 C -0.53 -15.02 9.38 -34.44 -0.32 -15.34 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 S 2.78 56.46 5.96 -107.50 -0.64 55.82 16 14 O -0.96 -23.00 16.61 -57.17 -0.95 -23.95 16 15 O -1.00 -20.07 15.12 -57.17 -0.86 -20.93 16 16 N -0.99 -15.98 3.22 -114.61 -0.37 -16.35 16 17 C 0.10 1.43 9.44 59.85 0.57 2.00 16 18 C 0.12 1.54 2.92 -67.94 -0.20 1.34 16 19 H 0.13 1.69 7.03 -51.93 -0.36 1.33 16 20 C -0.15 -1.26 6.79 -25.10 -0.17 -1.43 16 21 C 0.10 0.64 7.78 -3.12 -0.02 0.61 16 22 N -0.74 -6.47 6.25 -59.14 -0.37 -6.83 16 23 C 0.51 6.72 6.34 -10.75 -0.07 6.65 16 24 O -0.50 -8.62 16.25 5.56 0.09 -8.53 16 25 H 0.05 0.94 5.60 -51.93 -0.29 0.64 16 26 H 0.06 1.14 8.11 -51.93 -0.42 0.72 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.58 8.12 -51.93 -0.42 1.16 16 29 H 0.07 1.29 6.84 -51.93 -0.35 0.94 16 30 H 0.03 0.85 6.53 -51.93 -0.34 0.52 16 31 H 0.04 0.98 8.08 -51.93 -0.42 0.56 16 32 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 33 H 0.06 0.72 8.02 -51.93 -0.42 0.30 16 34 H 0.06 0.88 6.87 -51.93 -0.36 0.52 16 35 H 0.08 1.47 6.63 -51.93 -0.34 1.13 16 36 H 0.09 0.77 7.37 -51.93 -0.38 0.39 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.41 2.90 8.96 -40.82 -0.37 2.53 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -35.55 337.01 -8.34 -43.88 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -5.71 Total: 0.29 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 0.01 Total: 1.97 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -0.33 Total: -70.78 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -1.72 Total: -53.41 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 56.46 SS G_CDS: -0.64 Total: 55.82 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -35.55 -8.34 -43.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336950459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.356 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds