Wall clock time and date at job start Fri Apr 10 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47194 * 2 1 4 4 C 1.46504 * 119.99578 * 83.44248 * 3 2 1 5 5 C 1.50701 * 109.47170 * 85.00013 * 4 3 2 6 6 H 1.07997 * 119.99844 * 0.02562 * 5 4 3 7 7 C 1.37880 * 119.99857 * 179.97438 * 5 4 3 8 8 N 1.31517 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99967 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47010 * 60.00286 * 9 7 5 11 11 H 1.48495 * 109.47184 * 180.02562 * 9 7 5 12 12 H 1.48497 * 109.47366 * 300.00852 * 9 7 5 13 13 S 1.65594 * 120.00586 * 263.44411 * 3 2 1 14 14 O 1.42098 * 106.40373 * 210.79154 * 13 3 2 15 15 O 1.42107 * 106.40001 * 343.70932 * 13 3 2 16 16 N 1.65596 * 107.21936 * 97.24791 * 13 3 2 17 17 C 1.46504 * 119.99895 * 85.49206 * 16 13 3 18 18 C 1.46503 * 120.00191 * 265.48683 * 16 13 3 19 19 H 1.09004 * 110.43350 * 7.93796 * 18 16 13 20 20 C 1.54631 * 110.48783 * 245.39187 * 18 16 13 21 21 C 1.54480 * 101.76490 * 216.52418 * 20 18 16 22 22 N 1.46760 * 105.47292 * 25.41707 * 21 20 18 23 23 C 1.34657 * 111.34053 * 342.87015 * 22 21 20 24 24 O 1.21280 * 125.07642 * 180.52052 * 23 22 21 25 25 H 1.08994 * 109.47681 * 55.51372 * 1 2 3 26 26 H 1.09001 * 109.46907 * 295.51422 * 1 2 3 27 27 H 1.08999 * 109.46982 * 175.52282 * 1 2 3 28 28 H 1.08994 * 109.47741 * 120.00421 * 2 1 3 29 29 H 1.08998 * 109.46919 * 240.00681 * 2 1 3 30 30 H 1.08996 * 109.47091 * 205.00073 * 4 3 2 31 31 H 1.09004 * 109.47153 * 324.99867 * 4 3 2 32 32 H 0.96991 * 119.99907 * 179.97438 * 8 7 5 33 33 H 1.08999 * 109.47464 * 89.99713 * 17 16 13 34 34 H 1.09003 * 109.46606 * 210.00327 * 17 16 13 35 35 H 1.09004 * 109.46888 * 329.99226 * 17 16 13 36 36 H 1.09003 * 110.96766 * 334.64392 * 20 18 16 37 37 H 1.08999 * 110.96449 * 98.36577 * 20 18 16 38 38 H 1.09003 * 110.24198 * 144.41894 * 21 20 18 39 39 H 1.09000 * 110.24407 * 266.32638 * 21 20 18 40 40 H 0.97002 * 124.34960 * 162.98256 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1259 2.1201 1.2605 5 6 3.4461 1.8059 1.9159 6 1 4.1361 1.1245 1.4408 7 6 3.7733 2.3894 3.1215 8 7 2.9332 3.2196 3.6999 9 14 5.4094 1.9994 3.9342 10 1 6.5184 2.3975 3.0303 11 1 5.5184 2.7484 5.2118 12 1 5.4919 0.5420 4.2067 13 16 2.4487 2.1074 -1.4246 14 8 3.4816 3.0306 -1.1084 15 8 2.6039 1.0635 -2.3762 16 7 1.1533 3.0087 -1.9264 17 6 0.9732 4.3739 -1.4263 18 6 0.1876 2.4410 -2.8704 19 1 0.3892 1.3818 -3.0303 20 6 0.2274 3.2082 -4.2124 21 6 -1.2618 3.2021 -4.6231 22 7 -2.0133 3.0752 -3.3689 23 6 -1.2250 2.6410 -2.3671 24 8 -1.5917 2.4407 -1.2286 25 1 -0.3634 0.5818 -0.8470 26 1 -0.3633 0.4427 0.9275 27 1 -0.3633 -1.0245 -0.0802 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5137 -0.8900 30 1 2.0648 3.1899 1.0609 31 1 1.3121 1.8272 1.9239 32 1 3.1633 3.6297 4.5482 33 1 1.4840 5.0736 -2.0877 34 1 -0.0900 4.6124 -1.3962 35 1 1.3913 4.4513 -0.4226 36 1 0.5884 4.2267 -4.0689 37 1 0.8371 2.6801 -4.9456 38 1 -1.5187 4.1356 -5.1240 39 1 -1.4695 2.3546 -5.2763 40 1 -2.9574 3.2766 -3.2737 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336950459.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:28 Heat of formation + Delta-G solvation = -128.663684 kcal Electronic energy + Delta-G solvation = -25234.331496 eV Core-core repulsion = 21596.129154 eV Total energy + Delta-G solvation = -3638.202342 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.44390 -38.39437 -37.71516 -37.56559 -36.90163 -36.40790 -34.71658 -31.61647 -31.22906 -28.65879 -28.51769 -26.58231 -24.97112 -23.27568 -22.85126 -21.47081 -19.92096 -19.22768 -18.47930 -18.37383 -18.32133 -17.42554 -16.87063 -16.73024 -16.20124 -15.42642 -15.37799 -14.90437 -14.83640 -14.70815 -14.62341 -14.28677 -13.89666 -13.83045 -13.67582 -13.47817 -13.35412 -13.14494 -13.08265 -12.97589 -12.76402 -12.69365 -12.45539 -12.20282 -12.16844 -12.13617 -11.76674 -11.66067 -11.23259 -10.59442 -10.07257 -9.97959 -9.77134 -8.19418 -6.31913 -0.42657 1.38966 1.42828 1.43462 1.50191 1.93769 2.38472 2.41917 2.48974 3.10507 3.29321 3.34894 3.52571 3.85539 3.96598 4.00936 4.03985 4.40835 4.42579 4.47153 4.55982 4.68687 4.76781 4.78452 4.84540 4.96255 5.04098 5.10916 5.17882 5.19488 5.35899 5.42356 5.55098 5.71130 5.86565 5.95346 6.04161 6.10767 6.76005 7.26077 7.36637 8.88151 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023300 B = 0.005067 C = 0.004944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.421288 B = 5524.738736 C = 5661.554863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 N -0.997 5.997 4 C 0.280 3.720 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.926 5.926 9 Si 0.959 3.041 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.264 1.264 13 S 2.790 3.210 14 O -0.999 6.999 15 O -0.996 6.996 16 N -0.988 5.988 17 C 0.096 3.904 18 C 0.103 3.897 19 H 0.128 0.872 20 C -0.143 4.143 21 C 0.106 3.894 22 N -0.719 5.719 23 C 0.504 3.496 24 O -0.552 6.552 25 H 0.056 0.944 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.013 0.987 31 H 0.017 0.983 32 H 0.267 0.733 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.855 -0.017 -19.436 22.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.013 4.013 3 N -0.838 5.838 4 C 0.156 3.844 5 C -0.586 4.586 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.201 1.201 12 H -0.189 1.189 13 S 2.800 3.200 14 O -0.983 6.983 15 O -0.980 6.980 16 N -0.827 5.827 17 C -0.049 4.049 18 C -0.007 4.007 19 H 0.146 0.854 20 C -0.183 4.183 21 C -0.017 4.017 22 N -0.375 5.375 23 C 0.287 3.713 24 O -0.429 6.429 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.031 0.969 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.111 -0.104 -19.130 21.638 hybrid contribution 0.028 0.147 1.314 1.323 sum -10.084 0.043 -17.816 20.472 Atomic orbital electron populations 1.22139 0.95010 1.02479 1.01954 1.21350 0.94878 0.81597 1.03496 1.57682 1.81128 1.22533 1.22415 1.18498 0.95702 0.89728 0.80462 1.21787 1.03610 1.27355 1.05842 0.92847 1.25773 1.00781 0.94659 0.97555 1.70024 1.37629 1.30619 1.18296 0.85605 0.79550 0.78881 0.77662 1.20038 1.20107 1.18903 1.01565 0.73549 0.72508 0.72368 1.93580 1.54800 1.65162 1.84731 1.93483 1.86219 1.56949 1.61332 1.57728 1.42848 1.25094 1.57070 1.21521 1.02975 0.81358 0.99043 1.21855 0.86784 1.01274 0.90748 0.85409 1.23174 0.98238 1.02675 0.94196 1.22333 0.88857 1.05403 0.85153 1.46184 1.13256 1.67127 1.10972 1.21211 0.89021 0.76129 0.84897 1.90791 1.79475 1.52309 1.20342 0.92498 0.94276 0.89740 0.90763 0.89112 0.96943 0.96523 0.92394 0.89806 0.90474 0.93162 0.88478 0.86546 0.86866 0.88212 0.73938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.33 10.23 71.98 0.74 -4.59 16 2 C 0.11 4.28 6.38 86.38 0.55 4.83 16 3 N -1.00 -44.80 2.83 -519.84 -1.47 -46.27 16 4 C 0.28 15.15 5.10 85.63 0.44 15.59 16 5 C -0.55 -32.19 9.38 25.60 0.24 -31.95 16 6 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 7 C 0.01 0.68 5.46 84.65 0.46 1.14 16 8 N -0.93 -56.18 13.29 21.45 0.28 -55.89 16 9 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 10 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 13 S 2.79 115.03 5.96 -56.49 -0.34 114.69 16 14 O -1.00 -49.44 16.61 -128.00 -2.13 -51.57 16 15 O -1.00 -39.48 15.12 -128.00 -1.94 -41.42 16 16 N -0.99 -31.53 3.22 -516.51 -1.66 -33.20 16 17 C 0.10 2.91 9.44 127.77 1.21 4.12 16 18 C 0.10 2.50 2.92 44.99 0.13 2.64 16 19 H 0.13 3.13 7.03 -2.38 -0.02 3.11 16 20 C -0.14 -1.95 6.79 31.65 0.21 -1.74 16 21 C 0.11 0.81 7.78 86.83 0.68 1.49 16 22 N -0.72 -10.49 6.25 -459.48 -2.87 -13.36 16 23 C 0.50 12.63 6.34 87.86 0.56 13.19 16 24 O -0.55 -19.14 16.25 -3.03 -0.05 -19.19 16 25 H 0.06 1.92 5.60 -2.39 -0.01 1.91 16 26 H 0.04 1.48 8.11 -2.39 -0.02 1.47 16 27 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.07 2.91 8.12 -2.39 -0.02 2.89 16 29 H 0.09 3.13 6.84 -2.39 -0.02 3.11 16 30 H 0.01 0.73 6.53 -2.39 -0.02 0.71 16 31 H 0.02 0.95 8.08 -2.38 -0.02 0.93 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 33 H 0.08 2.05 8.02 -2.39 -0.02 2.03 16 34 H 0.08 2.10 6.87 -2.39 -0.02 2.09 16 35 H 0.05 1.87 6.63 -2.38 -0.02 1.85 16 36 H 0.10 1.27 7.37 -2.39 -0.02 1.25 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.42 4.73 8.96 -92.71 -0.83 3.90 16 Total: -1.00 -79.67 337.01 -2.70 -82.37 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.23 Total: 11.28 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.21 Total: 4.70 kcal Atomic # 7 Polarization: -143.00 SS G_CDS: -5.72 Total: -148.72 kcal Atomic # 8 Polarization: -108.07 SS G_CDS: -4.11 Total: -112.18 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 115.03 SS G_CDS: -0.34 Total: 114.69 kcal Total: -79.67 -2.70 -82.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336950459.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.297 kcal (2) G-P(sol) polarization free energy of solvation -79.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds