Wall clock time and date at job start Fri Apr 10 2020 17:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47243 * 2 1 4 4 C 1.46500 * 119.99837 * 273.71327 * 3 2 1 5 5 C 1.50696 * 109.47426 * 275.00125 * 4 3 2 6 6 H 1.08010 * 119.99801 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00625 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00556 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99719 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46888 * 90.00010 * 9 7 5 11 11 H 1.48498 * 109.47197 * 210.00160 * 9 7 5 12 12 H 1.48503 * 109.47020 * 330.00257 * 9 7 5 13 13 S 1.65595 * 120.00352 * 93.71707 * 3 2 1 14 14 O 1.42097 * 106.40439 * 23.80332 * 13 3 2 15 15 O 1.42104 * 106.40424 * 156.72670 * 13 3 2 16 16 N 1.65602 * 107.21741 * 270.26444 * 13 3 2 17 17 C 1.47267 * 121.35507 * 94.22446 * 16 13 3 18 18 C 1.53468 * 107.93493 * 118.51377 * 17 16 13 19 19 N 1.45654 * 110.73661 * 46.91289 * 18 17 16 20 20 C 1.33381 * 124.59215 * 337.98584 * 19 18 17 21 21 O 1.21272 * 118.48941 * 184.29447 * 20 19 18 22 22 C 1.47048 * 121.35467 * 274.51160 * 16 13 3 23 23 H 1.09014 * 109.56662 * 102.77007 * 22 16 13 24 24 C 1.52996 * 109.56963 * 342.53954 * 22 16 13 25 25 H 1.09008 * 109.46899 * 54.95196 * 1 2 3 26 26 H 1.08995 * 109.47386 * 174.95327 * 1 2 3 27 27 H 1.08999 * 109.47240 * 294.95516 * 1 2 3 28 28 H 1.08995 * 109.47089 * 239.99814 * 2 1 3 29 29 H 1.09003 * 109.46781 * 119.99917 * 2 1 3 30 30 H 1.09003 * 109.47508 * 34.99911 * 4 3 2 31 31 H 1.08997 * 109.47678 * 154.99811 * 4 3 2 32 32 H 0.96997 * 120.00531 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.72334 * 238.19451 * 17 16 13 34 34 H 1.09006 * 109.71905 * 358.84942 * 17 16 13 35 35 H 1.08999 * 109.33278 * 286.53635 * 18 17 16 36 36 H 1.08995 * 109.13950 * 167.17732 * 18 17 16 37 37 H 0.97003 * 117.70070 * 157.99854 * 19 18 17 38 38 H 1.09004 * 109.47425 * 62.89920 * 24 22 16 39 39 H 1.08993 * 109.47685 * 182.90069 * 24 22 16 40 40 H 1.09003 * 109.47247 * 302.90191 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1850 2.0991 -1.2661 5 6 3.5342 1.7747 -1.8537 6 1 4.2008 1.1007 -1.3360 7 6 3.9175 2.3374 -3.0527 8 7 5.0951 2.0547 -3.5653 9 14 2.7638 3.5015 -3.9491 10 1 3.0175 4.8938 -3.4992 11 1 2.9997 3.4032 -5.4120 12 1 1.3569 3.1328 -3.6488 13 16 2.3820 2.1309 1.4310 14 8 2.6658 1.0978 2.3645 15 8 3.3001 3.1694 1.1180 16 7 0.9996 2.8730 1.9608 17 6 0.0869 2.2079 2.9061 18 6 0.0250 3.0592 4.1815 19 7 -0.1664 4.4655 3.8542 20 6 0.1352 5.0170 2.6778 21 8 0.0041 6.2159 2.5504 22 6 0.6303 4.2202 1.5017 23 1 -0.1566 4.1472 0.7508 24 6 1.8548 4.9086 0.8954 25 1 -0.3633 0.5902 -0.8414 26 1 -0.3634 -1.0236 -0.0904 27 1 -0.3634 0.4336 0.9317 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.4031 1.7951 -1.9620 31 1 2.1151 3.1721 -1.0874 32 1 5.3646 2.4503 -4.4089 33 1 -0.9067 2.1297 2.4648 34 1 0.4640 1.2130 3.1432 35 1 0.9553 2.9438 4.7378 36 1 -0.8059 2.7181 4.7988 37 1 -0.5393 5.0413 4.5400 38 1 2.1874 4.3525 0.0189 39 1 1.5924 5.9251 0.6026 40 1 2.6571 4.9385 1.6326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337097551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:42 Heat of formation + Delta-G solvation = -81.674487 kcal Electronic energy + Delta-G solvation = -25513.030638 eV Core-core repulsion = 21876.865900 eV Total energy + Delta-G solvation = -3636.164738 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.39829 -37.15001 -36.92829 -36.29894 -35.41449 -34.58435 -32.64591 -31.21972 -30.32713 -28.07657 -27.17465 -24.86772 -23.27013 -22.95868 -21.64918 -19.94916 -18.49099 -17.67909 -17.46557 -16.99939 -16.88448 -16.25376 -15.64401 -15.55927 -15.24807 -14.31665 -14.27089 -14.03536 -13.56527 -13.50864 -13.21132 -12.93624 -12.70523 -12.53060 -12.43738 -12.21403 -12.05819 -11.77816 -11.71644 -11.64733 -11.32882 -11.09745 -10.98111 -10.53500 -10.45039 -10.31999 -10.19680 -9.97545 -9.59382 -9.34090 -9.05641 -8.62112 -8.21375 -6.11755 -4.11559 0.91666 2.49420 2.94204 3.23362 3.27285 3.29536 3.34073 3.85166 4.33242 4.34832 4.42932 4.60170 4.81219 4.96720 5.04239 5.13141 5.19976 5.23020 5.30349 5.45534 5.55420 5.57226 5.69021 5.80884 5.99537 6.06535 6.15565 6.28005 6.40027 6.44298 6.57707 6.65031 6.86322 7.06536 7.10549 7.32097 7.53228 8.05113 8.44540 8.92908 9.46916 11.01642 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.006472 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.839137 B = 4325.253308 C = 5065.612641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.983 5.983 4 C 0.224 3.776 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.867 3.133 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.264 1.264 13 S 2.776 3.224 14 O -0.989 6.989 15 O -0.949 6.949 16 N -1.014 6.014 17 C 0.104 3.896 18 C 0.098 3.902 19 N -0.718 5.718 20 C 0.521 3.479 21 O -0.546 6.546 22 C 0.145 3.855 23 H 0.105 0.895 24 C -0.174 4.174 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.265 0.735 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.398 0.602 38 H 0.099 0.901 39 H 0.075 0.925 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.500 -1.312 12.997 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 N -0.824 5.824 4 C 0.101 3.899 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.694 3.306 10 H -0.196 1.196 11 H -0.209 1.209 12 H -0.189 1.189 13 S 2.787 3.213 14 O -0.973 6.973 15 O -0.933 6.933 16 N -0.854 5.854 17 C -0.022 4.022 18 C -0.029 4.029 19 N -0.370 5.370 20 C 0.307 3.693 21 O -0.422 6.422 22 C 0.036 3.964 23 H 0.122 0.878 24 C -0.232 4.232 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.129 0.871 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.233 0.767 38 H 0.117 0.883 39 H 0.094 0.906 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.477 -0.808 13.009 18.749 hybrid contribution -1.091 0.678 -0.476 1.370 sum -14.567 -0.129 12.533 19.217 Atomic orbital electron populations 1.22285 0.97206 1.01880 1.01741 1.21201 0.92925 0.82868 1.04120 1.57553 1.80978 1.21544 1.22285 1.19567 0.98318 0.91136 0.80909 1.21335 1.00150 1.29392 1.06234 0.90404 1.24854 0.94976 0.95991 0.96974 1.69886 1.19573 1.43998 1.19669 0.86995 0.81739 0.82348 0.79535 1.19569 1.20926 1.18904 1.02315 0.73257 0.72969 0.72791 1.93511 1.83077 1.58015 1.62678 1.93759 1.60314 1.55342 1.83838 1.58921 1.43157 1.25235 1.58038 1.21828 0.95178 0.96886 0.88320 1.21818 1.02703 0.80713 0.97636 1.45314 1.65531 1.10930 1.15247 1.20369 0.76499 0.88145 0.84334 1.90758 1.53605 1.14779 1.83097 1.21142 1.00675 0.80590 0.94029 0.87772 1.22764 0.94608 1.01596 1.04249 0.92033 0.91878 0.93452 0.89243 0.90325 0.94821 0.95031 0.92465 0.90269 0.87061 0.91017 0.89369 0.76695 0.88271 0.90602 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.03 10.24 37.16 0.38 -1.65 16 2 C 0.12 1.79 6.39 -4.04 -0.03 1.76 16 3 N -0.98 -18.37 2.82 -115.67 -0.33 -18.70 16 4 C 0.22 4.92 4.16 -5.20 -0.02 4.90 16 5 C -0.53 -14.53 9.94 -34.44 -0.34 -14.87 16 6 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 7 C 0.08 2.11 5.47 -17.82 -0.10 2.02 16 8 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 9 Si 0.87 20.45 27.47 -169.99 -4.67 15.78 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 13 S 2.78 50.37 5.90 -107.50 -0.63 49.73 16 14 O -0.99 -18.63 15.32 -57.17 -0.88 -19.51 16 15 O -0.95 -20.59 12.05 -57.17 -0.69 -21.28 16 16 N -1.01 -13.83 3.34 -107.44 -0.36 -14.19 16 17 C 0.10 0.99 5.69 -3.38 -0.02 0.97 16 18 C 0.10 0.77 7.35 -4.26 -0.03 0.74 16 19 N -0.72 -7.31 5.42 -61.07 -0.33 -7.64 16 20 C 0.52 7.25 7.35 -11.73 -0.09 7.16 16 21 O -0.55 -9.30 17.14 5.56 0.10 -9.21 16 22 C 0.14 2.05 3.70 -68.91 -0.25 1.80 16 23 H 0.10 1.29 8.14 -51.92 -0.42 0.87 16 24 C -0.17 -2.96 7.34 37.16 0.27 -2.68 16 25 H 0.06 0.77 8.14 -51.92 -0.42 0.34 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.48 7.14 -51.93 -0.37 0.10 16 28 H 0.09 1.47 8.10 -51.93 -0.42 1.05 16 29 H 0.08 1.17 6.94 -51.93 -0.36 0.81 16 30 H 0.03 0.71 7.16 -51.93 -0.37 0.34 16 31 H 0.03 0.69 4.46 -51.93 -0.23 0.46 16 32 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.08 0.58 8.04 -51.93 -0.42 0.17 16 34 H 0.11 1.00 7.00 -51.93 -0.36 0.64 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.40 3.36 8.80 -40.82 -0.36 3.00 16 38 H 0.10 1.88 3.76 -51.93 -0.20 1.69 16 39 H 0.08 1.22 7.80 -51.93 -0.41 0.81 16 40 H 0.09 1.64 6.63 -51.93 -0.34 1.29 16 LS Contribution 324.71 15.07 4.89 4.89 Total: -1.00 -34.82 324.71 -7.89 -42.71 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.54 Total: 3.40 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -0.23 Total: 0.15 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -0.24 Total: -66.67 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -1.47 Total: -50.00 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Atomic # 16 Polarization: 50.37 SS G_CDS: -0.63 Total: 49.73 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -34.82 -7.89 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337097551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.962 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds