Wall clock time and date at job start Fri Apr 10 2020 17:52:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47243 * 2 1 4 4 C 1.46500 * 119.99837 * 273.71327 * 3 2 1 5 5 C 1.50696 * 109.47426 * 275.00125 * 4 3 2 6 6 H 1.08010 * 119.99801 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00625 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00556 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 119.99719 * 359.97438 * 7 5 4 10 10 H 1.48507 * 109.46888 * 90.00010 * 9 7 5 11 11 H 1.48498 * 109.47197 * 210.00160 * 9 7 5 12 12 H 1.48503 * 109.47020 * 330.00257 * 9 7 5 13 13 S 1.65595 * 120.00352 * 93.71707 * 3 2 1 14 14 O 1.42097 * 106.40439 * 23.80332 * 13 3 2 15 15 O 1.42104 * 106.40424 * 156.72670 * 13 3 2 16 16 N 1.65602 * 107.21741 * 270.26444 * 13 3 2 17 17 C 1.47267 * 121.35507 * 94.22446 * 16 13 3 18 18 C 1.53468 * 107.93493 * 118.51377 * 17 16 13 19 19 N 1.45654 * 110.73661 * 46.91289 * 18 17 16 20 20 C 1.33381 * 124.59215 * 337.98584 * 19 18 17 21 21 O 1.21272 * 118.48941 * 184.29447 * 20 19 18 22 22 C 1.47048 * 121.35467 * 274.51160 * 16 13 3 23 23 H 1.09014 * 109.56662 * 102.77007 * 22 16 13 24 24 C 1.52996 * 109.56963 * 342.53954 * 22 16 13 25 25 H 1.09008 * 109.46899 * 54.95196 * 1 2 3 26 26 H 1.08995 * 109.47386 * 174.95327 * 1 2 3 27 27 H 1.08999 * 109.47240 * 294.95516 * 1 2 3 28 28 H 1.08995 * 109.47089 * 239.99814 * 2 1 3 29 29 H 1.09003 * 109.46781 * 119.99917 * 2 1 3 30 30 H 1.09003 * 109.47508 * 34.99911 * 4 3 2 31 31 H 1.08997 * 109.47678 * 154.99811 * 4 3 2 32 32 H 0.96997 * 120.00531 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.72334 * 238.19451 * 17 16 13 34 34 H 1.09006 * 109.71905 * 358.84942 * 17 16 13 35 35 H 1.08999 * 109.33278 * 286.53635 * 18 17 16 36 36 H 1.08995 * 109.13950 * 167.17732 * 18 17 16 37 37 H 0.97003 * 117.70070 * 157.99854 * 19 18 17 38 38 H 1.09004 * 109.47425 * 62.89920 * 24 22 16 39 39 H 1.08993 * 109.47685 * 182.90069 * 24 22 16 40 40 H 1.09003 * 109.47247 * 302.90191 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1850 2.0991 -1.2661 5 6 3.5342 1.7747 -1.8537 6 1 4.2008 1.1007 -1.3360 7 6 3.9175 2.3374 -3.0527 8 7 5.0951 2.0547 -3.5653 9 14 2.7638 3.5015 -3.9491 10 1 3.0175 4.8938 -3.4992 11 1 2.9997 3.4032 -5.4120 12 1 1.3569 3.1328 -3.6488 13 16 2.3820 2.1309 1.4310 14 8 2.6658 1.0978 2.3645 15 8 3.3001 3.1694 1.1180 16 7 0.9996 2.8730 1.9608 17 6 0.0869 2.2079 2.9061 18 6 0.0250 3.0592 4.1815 19 7 -0.1664 4.4655 3.8542 20 6 0.1352 5.0170 2.6778 21 8 0.0041 6.2159 2.5504 22 6 0.6303 4.2202 1.5017 23 1 -0.1566 4.1472 0.7508 24 6 1.8548 4.9086 0.8954 25 1 -0.3633 0.5902 -0.8414 26 1 -0.3634 -1.0236 -0.0904 27 1 -0.3634 0.4336 0.9317 28 1 1.8933 -0.5138 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.4031 1.7951 -1.9620 31 1 2.1151 3.1721 -1.0874 32 1 5.3646 2.4503 -4.4089 33 1 -0.9067 2.1297 2.4648 34 1 0.4640 1.2130 3.1432 35 1 0.9553 2.9438 4.7378 36 1 -0.8059 2.7181 4.7988 37 1 -0.5393 5.0413 4.5400 38 1 2.1874 4.3525 0.0189 39 1 1.5924 5.9251 0.6026 40 1 2.6571 4.9385 1.6326 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337097551.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:41 Heat of formation + Delta-G solvation = -111.056535 kcal Electronic energy + Delta-G solvation = -25514.304739 eV Core-core repulsion = 21876.865900 eV Total energy + Delta-G solvation = -3637.438839 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41752 -38.63066 -37.98592 -37.74785 -36.91340 -35.59787 -34.66259 -32.31713 -31.72300 -29.13795 -28.79286 -25.99773 -24.57330 -24.13473 -23.15024 -21.01885 -19.73364 -19.11447 -18.83417 -18.52720 -18.20701 -17.44285 -17.02270 -16.62477 -16.32348 -16.04306 -15.57733 -15.21312 -14.75980 -14.66294 -14.56643 -14.26942 -14.19688 -13.88708 -13.66070 -13.48722 -13.41806 -13.20587 -13.01961 -12.84038 -12.63778 -12.52108 -12.48411 -12.04918 -11.98203 -11.68140 -11.67133 -11.55731 -11.25262 -10.74897 -10.25562 -10.04201 -9.76187 -8.27363 -6.32383 -0.48004 1.37718 1.41576 1.44258 1.48814 1.84190 2.22365 2.36145 2.51445 3.06813 3.26908 3.36283 3.58380 3.87969 3.95381 4.02571 4.16165 4.31521 4.44067 4.46985 4.56358 4.60089 4.66489 4.76825 4.89840 4.94996 4.95515 5.05777 5.07515 5.28300 5.39733 5.46892 5.48950 5.54577 5.78850 5.87411 6.18592 6.32447 6.70920 7.09653 7.30397 8.90156 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.006472 C = 0.005526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.839137 B = 4325.253308 C = 5065.612641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.991 5.991 4 C 0.232 3.768 5 C -0.538 4.538 6 H 0.027 0.973 7 C 0.009 3.991 8 N -0.949 5.949 9 Si 0.934 3.066 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.225 1.225 13 S 2.786 3.214 14 O -1.001 7.001 15 O -0.994 6.994 16 N -1.004 6.004 17 C 0.090 3.910 18 C 0.093 3.907 19 N -0.704 5.704 20 C 0.521 3.479 21 O -0.584 6.584 22 C 0.147 3.853 23 H 0.130 0.870 24 C -0.173 4.173 25 H 0.058 0.942 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.266 0.734 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.138 0.862 37 H 0.409 0.591 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.623 -1.336 14.269 23.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.020 4.020 3 N -0.831 5.831 4 C 0.108 3.892 5 C -0.577 4.577 6 H 0.046 0.954 7 C -0.189 4.189 8 N -0.590 5.590 9 Si 0.756 3.244 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.147 1.147 13 S 2.798 3.202 14 O -0.985 6.985 15 O -0.978 6.978 16 N -0.847 5.847 17 C -0.034 4.034 18 C -0.032 4.032 19 N -0.355 5.355 20 C 0.306 3.694 21 O -0.464 6.464 22 C 0.038 3.962 23 H 0.148 0.852 24 C -0.231 4.231 25 H 0.077 0.923 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.156 0.844 37 H 0.246 0.754 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.628 -0.902 14.345 22.745 hybrid contribution 0.266 0.571 -0.710 0.949 sum -17.361 -0.331 13.635 22.078 Atomic orbital electron populations 1.22213 0.93487 1.03637 1.02833 1.21430 0.96005 0.81137 1.03406 1.57503 1.81580 1.22797 1.21196 1.19311 0.95470 0.91973 0.82451 1.21682 1.01980 1.27959 1.06074 0.95438 1.25879 0.96792 0.98075 0.98119 1.70067 1.22239 1.46142 1.20511 0.85919 0.81286 0.79412 0.77754 1.19365 1.20769 1.14734 1.01744 0.73658 0.72320 0.72517 1.93485 1.83737 1.58471 1.62788 1.93716 1.62904 1.56719 1.84440 1.58479 1.42791 1.24887 1.58495 1.22335 0.95737 0.97151 0.88157 1.22092 1.04771 0.78968 0.97338 1.45261 1.63826 1.12188 1.14185 1.20227 0.76510 0.87490 0.85162 1.90749 1.55598 1.16193 1.83875 1.21130 0.99801 0.80238 0.95051 0.85240 1.22617 0.95488 1.01988 1.03028 0.92321 0.89536 0.91190 0.91181 0.90008 0.92802 0.94205 0.92471 0.86871 0.86316 0.91334 0.84434 0.75372 0.90381 0.90188 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.24 71.98 0.74 -2.51 16 2 C 0.11 3.16 6.39 86.38 0.55 3.71 16 3 N -0.99 -36.49 2.82 -519.87 -1.47 -37.96 16 4 C 0.23 10.10 4.16 85.63 0.36 10.46 16 5 C -0.54 -30.43 9.94 25.60 0.25 -30.17 16 6 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 7 C 0.01 0.52 5.47 84.65 0.46 0.99 16 8 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 9 Si 0.93 41.98 27.47 68.60 1.88 43.86 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.22 -8.61 6.54 99.48 0.65 -7.96 16 13 S 2.79 99.96 5.90 -56.49 -0.33 99.63 16 14 O -1.00 -37.10 15.32 -128.00 -1.96 -39.06 16 15 O -0.99 -44.52 12.05 -128.00 -1.54 -46.06 16 16 N -1.00 -24.86 3.34 -493.82 -1.65 -26.52 16 17 C 0.09 1.31 5.69 86.39 0.49 1.80 16 18 C 0.09 1.05 7.35 86.70 0.64 1.69 16 19 N -0.70 -11.79 5.42 -466.29 -2.53 -14.32 16 20 C 0.52 13.22 7.35 87.79 0.65 13.86 16 21 O -0.58 -19.04 17.14 -3.00 -0.05 -19.09 16 22 C 0.15 3.83 3.70 44.06 0.16 3.99 16 23 H 0.13 2.75 8.14 -2.38 -0.02 2.73 16 24 C -0.17 -5.84 7.34 71.98 0.53 -5.31 16 25 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.07 1.07 7.14 -2.39 -0.02 1.05 16 28 H 0.07 2.33 8.10 -2.39 -0.02 2.31 16 29 H 0.08 2.36 6.94 -2.39 -0.02 2.34 16 30 H 0.05 2.14 7.16 -2.39 -0.02 2.12 16 31 H 0.04 1.71 4.46 -2.39 -0.01 1.70 16 32 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.11 0.97 8.04 -2.39 -0.02 0.95 16 34 H 0.12 1.62 7.00 -2.38 -0.02 1.61 16 35 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.14 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.41 5.43 8.80 -92.71 -0.82 4.62 16 38 H 0.08 2.97 3.76 -2.39 -0.01 2.96 16 39 H 0.08 2.56 7.80 -2.39 -0.02 2.54 16 40 H 0.07 2.60 6.63 -2.39 -0.02 2.59 16 Total: -1.00 -81.29 324.71 -2.33 -83.62 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.20 Total: 16.83 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: 4.83 Total: -1.50 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -5.35 Total: -138.23 kcal Atomic # 8 Polarization: -100.66 SS G_CDS: -3.56 Total: -104.22 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 1.88 Total: 43.86 kcal Atomic # 16 Polarization: 99.96 SS G_CDS: -0.33 Total: 99.63 kcal Total: -81.29 -2.33 -83.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337097551.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.435 kcal (2) G-P(sol) polarization free energy of solvation -81.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds