Wall clock time and date at job start Fri Apr 10 2020 17:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99515 * 274.99401 * 3 2 1 5 5 C 1.50693 * 109.47420 * 275.00061 * 4 3 2 6 6 H 1.08003 * 120.00233 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00106 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00289 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99990 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47094 * 89.99699 * 9 7 5 11 11 H 1.48500 * 109.46922 * 209.99546 * 9 7 5 12 12 H 1.48491 * 109.47224 * 329.99730 * 9 7 5 13 13 S 1.65597 * 120.00349 * 94.99908 * 3 2 1 14 14 O 1.42097 * 106.40170 * 336.45830 * 13 3 2 15 15 O 1.42104 * 106.39912 * 203.53901 * 13 3 2 16 16 N 1.65593 * 107.22190 * 90.00156 * 13 3 2 17 17 C 1.47272 * 121.35878 * 89.99679 * 16 13 3 18 18 C 1.52987 * 108.18606 * 118.52147 * 17 16 13 19 19 N 1.45639 * 110.77615 * 46.72756 * 18 17 16 20 20 C 1.33384 * 124.58975 * 338.11891 * 19 18 17 21 21 O 1.21280 * 118.48691 * 184.01099 * 20 19 18 22 22 C 1.47052 * 121.36156 * 270.04091 * 16 13 3 23 23 H 1.09000 * 109.57171 * 342.53062 * 22 16 13 24 24 C 1.53003 * 109.57078 * 102.88833 * 22 16 13 25 25 H 1.09001 * 109.47545 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47317 * 300.00616 * 1 2 3 27 27 H 1.09007 * 109.47371 * 60.00519 * 1 2 3 28 28 H 1.09000 * 109.47317 * 239.99384 * 2 1 3 29 29 H 1.08998 * 109.46841 * 119.99206 * 2 1 3 30 30 H 1.08995 * 109.47374 * 35.00417 * 4 3 2 31 31 H 1.09006 * 109.46920 * 155.00271 * 4 3 2 32 32 H 0.97000 * 120.00226 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.71373 * 358.84473 * 17 16 13 34 34 H 1.08994 * 109.72058 * 238.19547 * 17 16 13 35 35 H 1.09004 * 109.21604 * 286.39180 * 18 17 16 36 36 H 1.09001 * 109.17827 * 167.04268 * 18 17 16 37 37 H 0.97004 * 117.70899 * 158.10050 * 19 18 17 38 38 H 1.09000 * 109.47006 * 179.40234 * 24 22 16 39 39 H 1.08994 * 109.46905 * 299.40660 * 24 22 16 40 40 H 1.09003 * 109.46841 * 59.40776 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1085 -1.2640 5 6 3.4947 1.7887 -1.8823 6 1 4.1721 1.1110 -1.3839 7 6 3.8529 2.3611 -3.0844 8 7 3.0280 3.1860 -3.6917 9 14 5.5094 1.9640 -3.8512 10 1 5.3732 0.7813 -4.7389 11 1 5.9788 3.1276 -4.6455 12 1 6.4929 1.6674 -2.7790 13 16 2.4121 2.1203 1.4286 14 8 1.6868 1.4416 2.4447 15 8 2.3056 3.5187 1.1996 16 7 4.0143 1.8139 1.7137 17 6 5.0671 2.7171 1.2191 18 6 5.8274 3.2702 2.4260 19 7 6.1658 2.2026 3.3570 20 6 5.5357 1.0289 3.4246 21 8 5.8613 0.2467 4.2924 22 6 4.4439 0.6284 2.4702 23 1 3.5993 0.2264 3.0298 24 6 4.9726 -0.4329 1.5031 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 1.3618 1.8096 -1.9454 31 1 2.0922 3.1802 -1.0758 32 1 3.2802 3.5890 -4.5372 33 1 4.6156 3.5375 0.6613 34 1 5.7515 2.1660 0.5743 35 1 5.2055 4.0065 2.9351 36 1 6.7436 3.7506 2.0826 37 1 6.9012 2.3556 3.9708 38 1 5.3004 -1.3066 2.0664 39 1 4.1804 -0.7219 0.8126 40 1 5.8136 -0.0260 0.9417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337097553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:44 Heat of formation + Delta-G solvation = -108.637824 kcal Electronic energy + Delta-G solvation = -25484.170852 eV Core-core repulsion = 21846.836896 eV Total energy + Delta-G solvation = -3637.333956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.27286 -36.92250 -36.73270 -36.10362 -35.34371 -34.47163 -32.79080 -31.02292 -29.99932 -28.17601 -26.68914 -24.31285 -23.58812 -23.16884 -21.75595 -19.51840 -18.39635 -17.64857 -17.13304 -16.90169 -16.53960 -16.27884 -15.68323 -15.46043 -14.71156 -14.35568 -13.97271 -13.82953 -13.72824 -13.36416 -12.99839 -12.85361 -12.41575 -12.25029 -12.06988 -12.03292 -11.89791 -11.74784 -11.61604 -11.45797 -11.42084 -11.13944 -11.09543 -11.01958 -10.56793 -10.46695 -10.12104 -10.04623 -9.84477 -9.19739 -8.86721 -8.57208 -8.13329 -6.18716 -4.25791 1.07316 2.58569 3.08144 3.17787 3.25709 3.26624 3.37849 3.95939 4.28356 4.44874 4.69088 4.80218 5.11822 5.13304 5.15800 5.19169 5.32759 5.36309 5.47498 5.69197 5.73441 5.79280 5.84462 5.99395 6.04386 6.13631 6.23501 6.31651 6.43550 6.61021 6.64562 6.76853 7.24126 7.28703 7.36273 7.56805 7.78225 8.07520 8.15256 8.79663 9.40656 10.89165 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.007466 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.048275 B = 3749.198168 C = 4743.628736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.129 3.871 3 N -0.988 5.988 4 C 0.245 3.755 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 S 2.784 3.216 14 O -0.993 6.993 15 O -0.972 6.972 16 N -1.005 6.005 17 C 0.111 3.889 18 C 0.094 3.906 19 N -0.714 5.714 20 C 0.525 3.475 21 O -0.555 6.555 22 C 0.137 3.863 23 H 0.128 0.872 24 C -0.156 4.156 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.265 0.735 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.397 0.603 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -2.820 8.114 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.002 3.998 3 N -0.830 5.830 4 C 0.123 3.877 5 C -0.579 4.579 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.198 1.198 13 S 2.794 3.206 14 O -0.977 6.977 15 O -0.956 6.956 16 N -0.844 5.844 17 C -0.015 4.015 18 C -0.032 4.032 19 N -0.365 5.365 20 C 0.311 3.689 21 O -0.433 6.433 22 C 0.028 3.972 23 H 0.145 0.855 24 C -0.215 4.215 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.232 0.768 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.060 -2.607 8.772 9.649 hybrid contribution 1.512 -0.204 -0.797 1.721 sum 4.572 -2.811 7.975 9.612 Atomic orbital electron populations 1.22204 0.96805 1.01502 1.02420 1.21017 0.93796 0.82842 1.02135 1.57757 1.78066 1.23022 1.24156 1.19214 0.97440 0.92164 0.78919 1.21541 1.02196 1.28023 1.06115 0.91816 1.24947 0.97138 0.94833 0.96873 1.69930 1.35951 1.29708 1.17049 0.86606 0.83974 0.77960 0.79463 1.20697 1.21172 1.19819 1.01870 0.72248 0.73530 0.72925 1.93541 1.69998 1.76439 1.57724 1.93577 1.85415 1.30606 1.86011 1.58671 1.25297 1.32693 1.67696 1.21714 0.90627 0.94577 0.94567 1.21849 1.00812 0.89355 0.91142 1.45314 1.36365 1.15900 1.38943 1.20226 0.82995 0.81204 0.84522 1.90747 1.66148 1.50402 1.35977 1.21095 0.97204 0.87004 0.91921 0.85451 1.22087 1.02918 0.97510 0.98996 0.92253 0.92650 0.92025 0.90062 0.91929 0.94312 0.93205 0.92549 0.86333 0.89838 0.91081 0.89283 0.76799 0.90802 0.90309 0.91492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.56 10.24 37.15 0.38 -2.18 16 2 C 0.13 2.09 5.93 -4.05 -0.02 2.06 16 3 N -0.99 -18.89 2.82 -115.67 -0.33 -19.22 16 4 C 0.24 5.61 5.43 -5.19 -0.03 5.59 16 5 C -0.54 -12.87 9.38 -34.44 -0.32 -13.20 16 6 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 7 C 0.07 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -24.02 13.29 55.43 0.74 -23.28 16 9 Si 0.89 19.40 29.54 -169.99 -5.02 14.38 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 12 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 13 S 2.78 52.25 6.13 -107.50 -0.66 51.60 16 14 O -0.99 -19.42 15.77 -57.17 -0.90 -20.33 16 15 O -0.97 -20.89 15.42 -57.17 -0.88 -21.77 16 16 N -1.01 -15.85 3.01 -107.71 -0.32 -16.18 16 17 C 0.11 1.57 6.38 -3.63 -0.02 1.55 16 18 C 0.09 1.03 7.34 -4.51 -0.03 1.00 16 19 N -0.71 -8.55 5.42 -61.33 -0.33 -8.88 16 20 C 0.53 7.81 7.10 -11.73 -0.08 7.73 16 21 O -0.55 -9.72 17.80 5.56 0.10 -9.62 16 22 C 0.14 2.02 3.19 -68.91 -0.22 1.80 16 23 H 0.13 1.91 6.98 -51.93 -0.36 1.54 16 24 C -0.16 -2.05 9.38 37.16 0.35 -1.70 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 29 H 0.06 0.90 7.24 -51.93 -0.38 0.53 16 30 H 0.04 0.94 8.11 -51.93 -0.42 0.52 16 31 H 0.05 1.27 6.91 -51.93 -0.36 0.91 16 32 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 33 H 0.12 1.84 7.11 -51.93 -0.37 1.47 16 34 H 0.08 1.15 7.50 -51.93 -0.39 0.76 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.40 3.97 8.80 -40.82 -0.36 3.61 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 1.02 7.63 -51.93 -0.40 0.63 16 40 H 0.07 0.88 7.48 -51.93 -0.39 0.49 16 LS Contribution 341.19 15.07 5.14 5.14 Total: -1.00 -31.16 341.19 -8.50 -39.65 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.92 Total: 4.32 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -0.10 Total: 4.19 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -0.25 Total: -67.56 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -1.68 Total: -51.72 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.02 Total: 14.38 kcal Atomic # 16 Polarization: 52.25 SS G_CDS: -0.66 Total: 51.60 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.16 -8.50 -39.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337097553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.986 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds