Wall clock time and date at job start Fri Apr 10 2020 17:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46498 * 109.47105 * 2 1 4 4 C 1.46504 * 119.99515 * 274.99401 * 3 2 1 5 5 C 1.50693 * 109.47420 * 275.00061 * 4 3 2 6 6 H 1.08003 * 120.00233 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00106 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00289 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99990 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47094 * 89.99699 * 9 7 5 11 11 H 1.48500 * 109.46922 * 209.99546 * 9 7 5 12 12 H 1.48491 * 109.47224 * 329.99730 * 9 7 5 13 13 S 1.65597 * 120.00349 * 94.99908 * 3 2 1 14 14 O 1.42097 * 106.40170 * 336.45830 * 13 3 2 15 15 O 1.42104 * 106.39912 * 203.53901 * 13 3 2 16 16 N 1.65593 * 107.22190 * 90.00156 * 13 3 2 17 17 C 1.47272 * 121.35878 * 89.99679 * 16 13 3 18 18 C 1.52987 * 108.18606 * 118.52147 * 17 16 13 19 19 N 1.45639 * 110.77615 * 46.72756 * 18 17 16 20 20 C 1.33384 * 124.58975 * 338.11891 * 19 18 17 21 21 O 1.21280 * 118.48691 * 184.01099 * 20 19 18 22 22 C 1.47052 * 121.36156 * 270.04091 * 16 13 3 23 23 H 1.09000 * 109.57171 * 342.53062 * 22 16 13 24 24 C 1.53003 * 109.57078 * 102.88833 * 22 16 13 25 25 H 1.09001 * 109.47545 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47317 * 300.00616 * 1 2 3 27 27 H 1.09007 * 109.47371 * 60.00519 * 1 2 3 28 28 H 1.09000 * 109.47317 * 239.99384 * 2 1 3 29 29 H 1.08998 * 109.46841 * 119.99206 * 2 1 3 30 30 H 1.08995 * 109.47374 * 35.00417 * 4 3 2 31 31 H 1.09006 * 109.46920 * 155.00271 * 4 3 2 32 32 H 0.97000 * 120.00226 * 179.97438 * 8 7 5 33 33 H 1.09001 * 109.71373 * 358.84473 * 17 16 13 34 34 H 1.08994 * 109.72058 * 238.19547 * 17 16 13 35 35 H 1.09004 * 109.21604 * 286.39180 * 18 17 16 36 36 H 1.09001 * 109.17827 * 167.04268 * 18 17 16 37 37 H 0.97004 * 117.70899 * 158.10050 * 19 18 17 38 38 H 1.09000 * 109.47006 * 179.40234 * 24 22 16 39 39 H 1.08994 * 109.46905 * 299.40660 * 24 22 16 40 40 H 1.09003 * 109.46841 * 59.40776 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1085 -1.2640 5 6 3.4947 1.7887 -1.8823 6 1 4.1721 1.1110 -1.3839 7 6 3.8529 2.3611 -3.0844 8 7 3.0280 3.1860 -3.6917 9 14 5.5094 1.9640 -3.8512 10 1 5.3732 0.7813 -4.7389 11 1 5.9788 3.1276 -4.6455 12 1 6.4929 1.6674 -2.7790 13 16 2.4121 2.1203 1.4286 14 8 1.6868 1.4416 2.4447 15 8 2.3056 3.5187 1.1996 16 7 4.0143 1.8139 1.7137 17 6 5.0671 2.7171 1.2191 18 6 5.8274 3.2702 2.4260 19 7 6.1658 2.2026 3.3570 20 6 5.5357 1.0289 3.4246 21 8 5.8613 0.2467 4.2924 22 6 4.4439 0.6284 2.4702 23 1 3.5993 0.2264 3.0298 24 6 4.9726 -0.4329 1.5031 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5137 0.8901 30 1 1.3618 1.8096 -1.9454 31 1 2.0922 3.1802 -1.0758 32 1 3.2802 3.5890 -4.5372 33 1 4.6156 3.5375 0.6613 34 1 5.7515 2.1660 0.5743 35 1 5.2055 4.0065 2.9351 36 1 6.7436 3.7506 2.0826 37 1 6.9012 2.3556 3.9708 38 1 5.3004 -1.3066 2.0664 39 1 4.1804 -0.7219 0.8126 40 1 5.8136 -0.0260 0.9417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337097553.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:44 Heat of formation + Delta-G solvation = -132.566841 kcal Electronic energy + Delta-G solvation = -25485.208492 eV Core-core repulsion = 21846.836896 eV Total energy + Delta-G solvation = -3638.371596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41060 -38.45644 -37.96723 -37.65484 -36.93652 -35.55862 -34.63706 -32.16883 -31.49681 -29.27659 -28.44224 -25.48138 -24.84102 -24.65149 -23.25477 -20.81829 -19.55238 -19.08787 -18.60399 -18.25377 -18.20011 -17.56140 -17.02562 -16.79136 -16.28766 -15.70643 -15.34956 -15.01189 -14.92432 -14.77073 -14.50228 -13.96843 -13.80662 -13.73690 -13.60215 -13.32548 -13.29483 -13.17306 -13.05634 -12.89440 -12.70741 -12.65651 -12.61566 -12.35697 -12.19012 -12.06730 -11.68364 -11.56564 -11.25073 -10.53102 -10.26597 -10.03603 -9.73522 -8.10677 -6.23719 -0.41559 1.43695 1.47658 1.49988 1.58404 1.80195 2.22783 2.45805 2.50416 3.21246 3.26084 3.37073 3.71663 3.97547 4.00474 4.03799 4.08367 4.35920 4.42562 4.46828 4.55636 4.69691 4.73719 4.79978 4.93887 4.98407 5.01223 5.15317 5.23913 5.30826 5.32027 5.44249 5.58600 5.78878 5.82487 5.99238 6.17094 6.17631 6.89412 7.08121 7.46732 8.97542 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.013161 B = 0.007466 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.048275 B = 3749.198168 C = 4743.628736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.992 5.992 4 C 0.261 3.739 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.930 5.930 9 Si 0.954 3.046 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.253 1.253 13 S 2.796 3.204 14 O -1.002 7.002 15 O -1.004 7.004 16 N -1.002 6.002 17 C 0.102 3.898 18 C 0.098 3.902 19 N -0.701 5.701 20 C 0.524 3.476 21 O -0.585 6.585 22 C 0.134 3.866 23 H 0.123 0.877 24 C -0.152 4.152 25 H 0.090 0.910 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.263 0.737 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.410 0.590 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.625 -3.844 8.681 11.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.006 4.006 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.570 5.570 9 Si 0.780 3.220 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.176 1.176 13 S 2.806 3.194 14 O -0.986 6.986 15 O -0.988 6.988 16 N -0.842 5.842 17 C -0.024 4.024 18 C -0.027 4.027 19 N -0.352 5.352 20 C 0.309 3.691 21 O -0.466 6.466 22 C 0.025 3.975 23 H 0.141 0.859 24 C -0.211 4.211 25 H 0.109 0.891 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.147 0.853 37 H 0.247 0.753 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.971 -3.626 9.359 11.201 hybrid contribution 0.885 0.122 -0.927 1.287 sum 5.856 -3.505 8.432 10.848 Atomic orbital electron populations 1.22200 0.96049 1.03247 1.01294 1.21283 0.94574 0.81366 1.03333 1.57662 1.78828 1.24046 1.22748 1.18754 0.96745 0.90794 0.79997 1.21814 1.02340 1.27231 1.05739 0.90409 1.25747 1.00424 0.94775 0.97606 1.70070 1.38040 1.31354 1.17573 0.85613 0.80332 0.77195 0.78863 1.20796 1.21805 1.17649 1.01334 0.72839 0.72651 0.72567 1.93522 1.70906 1.76387 1.57779 1.93533 1.86216 1.32704 1.86361 1.58409 1.24497 1.33613 1.67666 1.21895 0.90289 0.93980 0.96187 1.21946 1.02366 0.88725 0.89698 1.45236 1.35995 1.15096 1.38877 1.20190 0.83017 0.81761 0.84123 1.90739 1.67147 1.51575 1.37099 1.21213 0.97282 0.86796 0.92177 0.85906 1.22074 1.02923 0.97377 0.98731 0.89105 0.93584 0.93306 0.89724 0.89749 0.96339 0.96312 0.92775 0.88041 0.89031 0.90649 0.85284 0.75301 0.89635 0.90198 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.94 10.24 71.98 0.74 -4.21 16 2 C 0.12 3.75 5.93 86.38 0.51 4.27 16 3 N -0.99 -37.81 2.82 -519.87 -1.47 -39.28 16 4 C 0.26 12.19 5.43 85.63 0.47 12.66 16 5 C -0.53 -25.13 9.38 25.60 0.24 -24.89 16 6 H 0.08 3.39 7.81 -2.91 -0.02 3.37 16 7 C 0.01 0.69 5.46 84.65 0.46 1.15 16 8 N -0.93 -51.14 13.29 21.45 0.28 -50.86 16 9 Si 0.95 38.94 29.54 68.60 2.03 40.97 16 10 H -0.28 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.25 -9.39 7.11 99.48 0.71 -8.69 16 13 S 2.80 104.38 6.13 -56.49 -0.35 104.04 16 14 O -1.00 -38.63 15.77 -128.00 -2.02 -40.65 16 15 O -1.00 -43.93 15.42 -128.00 -1.97 -45.91 16 16 N -1.00 -30.28 3.01 -494.67 -1.49 -31.76 16 17 C 0.10 2.69 6.38 86.23 0.55 3.24 16 18 C 0.10 1.86 7.34 86.54 0.63 2.50 16 19 N -0.70 -14.86 5.42 -467.10 -2.53 -17.39 16 20 C 0.52 14.51 7.10 87.79 0.62 15.13 16 21 O -0.58 -19.52 17.80 -3.03 -0.05 -19.57 16 22 C 0.13 3.71 3.19 44.06 0.14 3.85 16 23 H 0.12 3.51 6.98 -2.39 -0.02 3.50 16 24 C -0.15 -3.64 9.38 71.98 0.68 -2.96 16 25 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 28 H 0.08 2.60 8.11 -2.39 -0.02 2.58 16 29 H 0.08 2.27 7.24 -2.39 -0.02 2.26 16 30 H 0.02 0.93 8.11 -2.39 -0.02 0.91 16 31 H 0.02 1.00 6.91 -2.38 -0.02 0.98 16 32 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 33 H 0.10 3.09 7.11 -2.39 -0.02 3.07 16 34 H 0.09 2.28 7.50 -2.39 -0.02 2.26 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.41 6.95 8.80 -92.71 -0.82 6.14 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.08 1.88 7.63 -2.39 -0.02 1.87 16 40 H 0.07 1.62 7.48 -2.39 -0.02 1.60 16 Total: -1.00 -67.00 341.19 -2.29 -69.29 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.24 Total: 20.38 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.04 Total: 10.74 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -5.20 Total: -139.29 kcal Atomic # 8 Polarization: -102.08 SS G_CDS: -4.05 Total: -106.12 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Atomic # 16 Polarization: 104.38 SS G_CDS: -0.35 Total: 104.04 kcal Total: -67.00 -2.29 -69.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337097553.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.275 kcal (2) G-P(sol) polarization free energy of solvation -66.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds