Wall clock time and date at job start Fri Apr 10 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99855 * 2 1 4 4 O 1.21581 * 120.00188 * 359.97438 * 3 2 1 5 5 N 1.34778 * 120.00002 * 179.97438 * 3 2 1 6 6 C 1.46497 * 120.00161 * 179.97438 * 5 3 2 7 7 H 1.08994 * 110.64204 * 323.31126 * 6 5 3 8 8 C 1.55154 * 110.72021 * 86.45243 * 6 5 3 9 9 C 1.54908 * 101.58289 * 153.86481 * 8 6 5 10 10 N 1.47425 * 104.92961 * 322.93718 * 9 8 6 11 11 S 1.65600 * 125.65067 * 204.15751 * 10 9 8 12 12 O 1.42104 * 104.27759 * 206.09701 * 11 10 9 13 13 O 1.42098 * 104.27371 * 333.94950 * 11 10 9 14 14 C 1.81396 * 104.45286 * 90.02270 * 11 10 9 15 15 C 1.52993 * 109.47235 * 180.02562 * 14 11 10 16 16 C 1.50702 * 109.47436 * 179.97438 * 15 14 11 17 17 H 1.08006 * 119.99502 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00393 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99947 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00177 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47594 * 59.99776 * 20 18 16 22 22 H 1.48502 * 109.47455 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47069 * 299.99740 * 20 18 16 24 24 C 1.47290 * 108.55742 * 24.15407 * 10 9 8 25 25 H 1.08997 * 109.47324 * 300.00213 * 1 2 3 26 26 H 1.08995 * 109.47158 * 60.00532 * 1 2 3 27 27 H 1.09009 * 109.46917 * 180.02562 * 1 2 3 28 28 H 0.97001 * 119.99807 * 179.97438 * 2 1 3 29 29 H 0.97001 * 119.99660 * 359.97438 * 5 3 2 30 30 H 1.09008 * 111.00345 * 35.78951 * 8 6 5 31 31 H 1.09000 * 111.03743 * 271.95917 * 8 6 5 32 32 H 1.09002 * 110.36632 * 81.83114 * 9 8 6 33 33 H 1.08995 * 110.36781 * 204.04351 * 9 8 6 34 34 H 1.09009 * 109.46844 * 300.00216 * 14 11 10 35 35 H 1.08998 * 109.47432 * 59.99932 * 14 11 10 36 36 H 1.08995 * 109.47266 * 299.99905 * 15 14 11 37 37 H 1.09006 * 109.47160 * 59.99926 * 15 14 11 38 38 H 0.96996 * 119.99982 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.85762 * 239.50064 * 24 10 9 40 40 H 1.08995 * 110.00297 * 118.43011 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2201 -0.0005 5 7 3.4867 1.1672 0.0005 6 6 4.2191 2.4359 0.0000 7 1 3.7032 3.1772 -0.6101 8 6 4.4153 2.9572 1.4481 9 6 5.6955 3.8164 1.2986 10 7 6.5374 3.0798 0.3384 11 16 8.1852 3.1905 0.2162 12 8 8.4604 2.8459 -1.1346 13 8 8.4875 4.4850 0.7182 14 6 8.8095 1.9104 1.3396 15 6 10.3392 1.9128 1.3158 16 6 10.8579 0.8497 2.2496 17 1 10.1656 0.2336 2.8042 18 6 12.2161 0.6636 2.3959 19 7 13.0592 1.4135 1.7201 20 14 12.8590 -0.6546 3.5527 21 1 12.3599 -1.9831 3.1157 22 1 14.3439 -0.6521 3.5298 23 1 12.3844 -0.3769 4.9322 24 6 5.6672 2.2302 -0.4925 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 1.9500 -0.8401 0.0004 29 1 3.9716 0.3271 0.0013 30 1 4.5773 2.1320 2.1418 31 1 3.5690 3.5682 1.7620 32 1 5.4469 4.8026 0.9065 33 1 6.2052 3.9078 2.2577 34 1 8.4618 2.1147 2.3524 35 1 8.4424 0.9353 1.0193 36 1 10.6872 1.7087 0.3033 37 1 10.7060 2.8880 1.6365 38 1 14.0147 1.2824 1.8228 39 1 5.9525 1.1843 -0.3783 40 1 5.7482 2.5242 -1.5389 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342183848.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:48 Heat of formation + Delta-G solvation = -101.177330 kcal Electronic energy + Delta-G solvation = -23154.532525 eV Core-core repulsion = 19517.522081 eV Total energy + Delta-G solvation = -3637.010445 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39943 -38.43398 -36.64700 -35.48144 -34.84696 -34.35002 -33.92211 -31.19283 -30.23597 -28.91698 -26.50179 -25.62655 -22.71725 -21.77288 -21.48572 -20.95746 -19.06674 -18.63942 -17.65904 -16.92160 -16.40517 -16.03296 -15.71337 -15.50202 -15.12235 -14.69514 -14.56924 -14.30557 -13.93068 -13.69319 -13.43004 -13.09846 -13.00536 -12.60256 -12.54455 -12.13486 -11.79902 -11.78743 -11.61589 -11.52404 -11.35776 -11.11509 -11.08215 -11.00360 -10.51628 -10.47266 -10.41038 -9.81324 -9.61792 -9.39665 -9.16411 -8.81062 -8.53167 -6.15321 -4.21345 0.66534 2.35749 2.91545 3.01153 3.24457 3.29596 3.31145 3.91732 4.18356 4.25931 4.35902 4.36160 4.73867 4.83343 4.89443 5.06879 5.16368 5.18709 5.19686 5.34389 5.43753 5.55093 5.58769 5.65822 5.66636 5.78726 5.93311 6.01614 6.08049 6.25948 6.39087 6.44566 6.56644 7.26268 7.32406 7.67104 7.77061 8.14033 8.29909 8.81754 9.43501 10.95668 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003190 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.308598 B = 8775.022569 C = 9732.508792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.752 5.752 3 C 0.705 3.295 4 O -0.589 6.589 5 N -0.737 5.737 6 C 0.155 3.845 7 H 0.105 0.895 8 C -0.143 4.143 9 C 0.122 3.878 10 N -1.018 6.018 11 S 2.606 3.394 12 O -0.961 6.961 13 O -0.958 6.958 14 C -0.588 4.588 15 C 0.028 3.972 16 C -0.522 4.522 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.901 3.099 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.118 3.882 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.398 0.602 29 H 0.399 0.601 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.033 0.967 37 H 0.034 0.966 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.671 -3.624 -2.236 23.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.408 5.408 3 C 0.404 3.596 4 O -0.466 6.466 5 N -0.393 5.393 6 C 0.049 3.951 7 H 0.123 0.877 8 C -0.183 4.183 9 C -0.003 4.003 10 N -0.855 5.855 11 S 2.706 3.294 12 O -0.951 6.951 13 O -0.949 6.949 14 C -0.721 4.721 15 C -0.011 4.011 16 C -0.561 4.561 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.210 1.210 23 H -0.201 1.201 24 C -0.009 4.009 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.231 0.769 29 H 0.233 0.767 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -22.541 -1.939 -2.873 22.806 hybrid contribution 0.755 -2.127 1.115 2.517 sum -21.786 -4.066 -1.758 22.232 Atomic orbital electron populations 1.21392 0.78084 1.01965 1.02308 1.44931 1.07838 1.07202 1.80826 1.15921 0.81675 0.84312 0.77666 1.90937 1.67820 1.30275 1.57581 1.45095 1.04691 1.09356 1.80113 1.21846 0.90749 0.85305 0.97248 0.87671 1.23245 0.97791 1.00420 0.96846 1.21920 0.90504 0.95202 0.92702 1.58987 1.23712 1.56108 1.46668 1.05360 0.71042 0.76842 0.76174 1.93538 1.82535 1.85745 1.33312 1.93548 1.81951 1.37034 1.82337 1.30486 1.11320 1.15770 1.14558 1.18965 0.83153 0.99590 0.99401 1.20954 0.91679 1.17995 1.25478 0.92122 1.25069 0.96945 0.96420 0.96035 1.69943 1.02806 1.39039 1.41016 0.86520 0.77817 0.81769 0.81094 1.20097 1.21046 1.20072 1.21801 0.88590 0.94983 0.95509 0.92364 0.92359 0.90687 0.76870 0.76690 0.90204 0.89440 0.90970 0.90158 0.86247 0.86347 0.94835 0.94814 0.92424 0.91185 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.61 10.70 59.85 0.64 1.25 16 2 N -0.75 -4.99 5.72 -72.07 -0.41 -5.40 16 3 C 0.70 7.09 8.56 -86.92 -0.74 6.34 16 4 O -0.59 -8.39 16.07 5.29 0.09 -8.31 16 5 N -0.74 -5.97 5.21 -56.89 -0.30 -6.26 16 6 C 0.16 1.49 3.24 -66.10 -0.21 1.28 16 7 H 0.11 1.12 7.69 -51.93 -0.40 0.72 16 8 C -0.14 -1.35 6.77 -24.58 -0.17 -1.52 16 9 C 0.12 1.37 6.88 -2.53 -0.02 1.35 16 10 N -1.02 -13.38 3.63 -111.22 -0.40 -13.79 16 11 S 2.61 46.12 5.65 -107.50 -0.61 45.51 16 12 O -0.96 -19.57 17.61 -57.54 -1.01 -20.58 16 13 O -0.96 -19.73 17.60 -57.54 -1.01 -20.75 16 14 C -0.59 -10.93 6.12 37.15 0.23 -10.70 16 15 C 0.03 0.70 4.98 -27.89 -0.14 0.57 16 16 C -0.52 -14.22 9.11 -34.44 -0.31 -14.53 16 17 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 20 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 24 C 0.12 1.25 6.67 -2.92 -0.02 1.24 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.20 8.14 -51.92 -0.42 -0.22 16 28 H 0.40 1.45 8.84 -40.82 -0.36 1.09 16 29 H 0.40 2.16 8.33 -40.82 -0.34 1.82 16 30 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.12 2.00 8.14 -51.92 -0.42 1.57 16 35 H 0.12 1.95 8.14 -51.92 -0.42 1.52 16 36 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 350.42 15.07 5.28 5.28 Total: -1.00 -37.63 350.42 -9.62 -47.25 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.11 Total: -0.13 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -0.84 Total: -13.20 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: -0.38 Total: -50.98 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -1.94 Total: -49.63 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 46.12 SS G_CDS: -0.61 Total: 45.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -37.63 -9.62 -47.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342183848.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.930 kcal (2) G-P(sol) polarization free energy of solvation -37.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds