Wall clock time and date at job start Fri Apr 10 2020 17:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47158 * 2 1 4 4 C 1.45649 * 117.70304 * 90.00203 * 3 2 1 5 5 C 1.52987 * 110.76952 * 158.07663 * 4 3 2 6 6 N 1.47263 * 108.19058 * 46.72612 * 5 4 3 7 7 S 1.65599 * 121.35805 * 118.47591 * 6 5 4 8 8 O 1.42099 * 106.40280 * 23.55619 * 7 6 5 9 9 O 1.42095 * 106.40405 * 156.48326 * 7 6 5 10 10 N 1.65604 * 107.21597 * 270.02074 * 7 6 5 11 11 C 1.46502 * 119.99846 * 269.99818 * 10 7 6 12 12 C 1.46496 * 120.00162 * 89.99843 * 10 7 6 13 13 C 1.50697 * 109.47071 * 95.00025 * 12 10 7 14 14 H 1.07995 * 119.99988 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99879 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00086 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99998 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47521 * 89.99725 * 17 15 13 19 19 H 1.48505 * 109.47126 * 210.00124 * 17 15 13 20 20 H 1.48499 * 109.47083 * 329.99564 * 17 15 13 21 21 C 1.47055 * 117.29053 * 298.49200 * 6 5 4 22 22 C 1.33560 * 117.64673 * 269.88495 * 3 2 1 23 23 O 1.21285 * 118.62618 * 4.34958 * 22 3 2 24 24 H 1.09000 * 109.47619 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47498 * 300.00357 * 1 2 3 26 26 H 1.09004 * 109.47126 * 60.00251 * 1 2 3 27 27 H 1.09003 * 109.47231 * 239.99372 * 2 1 3 28 28 H 1.09003 * 109.47005 * 120.00289 * 2 1 3 29 29 H 1.09001 * 109.21934 * 37.73892 * 4 3 2 30 30 H 1.09004 * 109.17709 * 278.38193 * 4 3 2 31 31 H 1.08996 * 109.71825 * 287.04560 * 5 4 3 32 32 H 1.09000 * 109.71760 * 166.39875 * 5 4 3 33 33 H 1.09000 * 109.47126 * 90.00139 * 11 10 7 34 34 H 1.08998 * 109.46915 * 209.99790 * 11 10 7 35 35 H 1.08996 * 109.47457 * 330.00345 * 11 10 7 36 36 H 1.09004 * 109.47231 * 215.00192 * 12 10 7 37 37 H 1.08998 * 109.47072 * 334.99648 * 12 10 7 38 38 H 0.97002 * 120.00680 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.56819 * 162.56302 * 21 6 5 40 40 H 1.09004 * 109.56988 * 282.79932 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2440 2.0196 1.2895 5 6 3.2233 3.1870 1.1529 6 7 2.8127 3.9983 -0.0055 7 16 2.3674 5.5839 0.1673 8 8 2.9799 6.0446 1.3639 9 8 2.5726 6.1984 -1.0974 10 7 0.7340 5.6075 0.4391 11 6 -0.1953 5.6961 -0.6900 12 6 0.2183 5.5398 1.8086 13 6 -0.0403 6.9345 2.3175 14 1 0.1592 7.7861 1.6840 15 6 -0.5315 7.1234 3.5919 16 7 -0.7739 6.0864 4.3636 17 14 -0.8527 8.8521 4.2225 18 1 -2.2459 9.2478 3.8946 19 1 -0.6621 8.8853 5.6949 20 1 0.0948 9.7976 3.5794 21 6 2.8138 3.3430 -1.3220 22 6 2.2271 1.9647 -1.1831 23 8 1.9293 1.3586 -2.1906 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.6534 1.2874 1.9856 30 1 1.2949 2.3908 1.6764 31 1 4.2317 2.8046 0.9953 32 1 3.1974 3.7963 2.0563 33 1 -0.4505 4.6924 -1.0300 34 1 -1.1010 6.2144 -0.3753 35 1 0.2743 6.2472 -1.5047 36 1 -0.7115 4.9710 1.8191 37 1 0.9513 5.0494 2.4491 38 1 -1.1198 6.2191 5.2600 39 1 2.2141 3.9264 -2.0207 40 1 3.8364 3.2689 -1.6921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352134463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:54 Heat of formation + Delta-G solvation = -95.228232 kcal Electronic energy + Delta-G solvation = -24977.423537 eV Core-core repulsion = 21340.671065 eV Total energy + Delta-G solvation = -3636.752472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47362 -36.95218 -36.68251 -35.56804 -35.42227 -35.26785 -32.49411 -31.07883 -29.91512 -27.83201 -26.48503 -25.11664 -24.00969 -22.84281 -22.30392 -19.41872 -18.18366 -17.60608 -17.33481 -16.92208 -16.49618 -16.05946 -15.81680 -15.54887 -14.89126 -14.38155 -13.98775 -13.87057 -13.60023 -13.45180 -13.40130 -12.96195 -12.68418 -12.40463 -12.21374 -12.17072 -11.97748 -11.90877 -11.70829 -11.48241 -11.36371 -11.22391 -11.14341 -10.96849 -10.76741 -10.61868 -10.24523 -10.05579 -9.80959 -9.07162 -8.79655 -8.50389 -8.14020 -6.12899 -4.16807 0.98891 2.51096 2.82044 3.27541 3.28653 3.34629 3.40736 3.93885 4.33924 4.39841 4.62848 4.68716 4.92759 5.00987 5.07823 5.19560 5.22427 5.24538 5.33744 5.36183 5.45900 5.57718 5.61171 5.76586 5.85754 5.87386 5.97848 6.12583 6.20548 6.26029 6.41177 6.53926 7.11990 7.30798 7.33167 7.51013 7.84786 8.03556 8.13243 8.85672 9.48958 10.95600 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.005301 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.594645 B = 5280.689319 C = 5933.589084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.104 3.896 3 N -0.597 5.597 4 C 0.095 3.905 5 C 0.107 3.893 6 N -1.017 6.017 7 S 2.780 3.220 8 O -0.955 6.955 9 O -0.990 6.990 10 N -0.994 5.994 11 C 0.095 3.905 12 C 0.259 3.741 13 C -0.530 4.530 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.117 3.883 22 C 0.513 3.487 23 O -0.551 6.551 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.034 0.966 37 H 0.036 0.964 38 H 0.264 0.736 39 H 0.118 0.882 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.413 -11.516 -6.418 14.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.329 5.329 4 C -0.029 4.029 5 C -0.019 4.019 6 N -0.856 5.856 7 S 2.789 3.211 8 O -0.938 6.938 9 O -0.974 6.974 10 N -0.837 5.837 11 C -0.052 4.052 12 C 0.137 3.863 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.197 1.197 21 C -0.012 4.012 22 C 0.300 3.700 23 O -0.429 6.429 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.135 0.865 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.052 0.948 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.136 0.864 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.781 -11.093 -6.798 14.237 hybrid contribution -0.590 0.569 0.640 1.040 sum 5.191 -10.524 -6.158 13.252 Atomic orbital electron populations 1.22089 0.95575 1.02072 1.02793 1.21534 0.95004 0.82352 1.02981 1.47275 1.64977 1.14641 1.06056 1.21901 1.01022 0.95631 0.84343 1.21769 0.97713 0.92590 0.89819 1.58875 1.82583 1.31998 1.12129 1.02156 0.73517 0.72425 0.73044 1.93632 1.75358 1.77561 1.47273 1.93535 1.85893 1.73699 1.44250 1.57662 1.23404 1.87905 1.14695 1.21364 0.95364 1.00243 0.88223 1.19044 0.95339 0.97736 0.74187 1.21482 1.43511 0.92691 0.99224 0.92152 1.24915 0.95205 0.97332 0.96447 1.69903 1.44929 1.29589 1.09064 0.86509 0.78546 0.84448 0.78051 1.20605 1.21028 1.19677 1.21451 1.03362 0.90673 0.85704 1.20364 0.78085 0.88582 0.82944 1.90722 1.52063 1.64516 1.35557 0.91790 0.92215 0.92112 0.89839 0.90563 0.89382 0.90281 0.90202 0.86514 0.94374 0.90212 0.91512 0.94788 0.94597 0.92657 0.86438 0.87961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.23 37.15 0.38 -1.37 16 2 C 0.10 1.06 5.89 -4.05 -0.02 1.03 16 3 N -0.60 -7.10 2.81 -174.83 -0.49 -7.59 16 4 C 0.10 1.03 6.58 -4.51 -0.03 1.00 16 5 C 0.11 1.27 6.53 -3.63 -0.02 1.25 16 6 N -1.02 -14.58 3.36 -114.81 -0.39 -14.97 16 7 S 2.78 52.39 6.09 -107.50 -0.66 51.74 16 8 O -0.95 -21.18 15.82 -57.17 -0.90 -22.09 16 9 O -0.99 -19.72 15.70 -57.17 -0.90 -20.61 16 10 N -0.99 -19.77 3.23 -123.06 -0.40 -20.16 16 11 C 0.09 1.61 10.68 59.85 0.64 2.25 16 12 C 0.26 6.12 5.08 -5.20 -0.03 6.10 16 13 C -0.53 -14.35 9.38 -34.44 -0.32 -14.68 16 14 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.90 -25.08 13.29 55.43 0.74 -24.35 16 17 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 21 C 0.12 1.52 6.41 -5.02 -0.03 1.49 16 22 C 0.51 7.09 7.58 -11.65 -0.09 7.01 16 23 O -0.55 -9.02 16.26 5.55 0.09 -8.93 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.92 7.23 -51.93 -0.38 0.54 16 28 H 0.08 0.59 7.80 -51.93 -0.41 0.18 16 29 H 0.09 0.69 7.84 -51.93 -0.41 0.28 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.12 1.51 7.07 -51.93 -0.37 1.15 16 33 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.07 1.07 7.02 -51.93 -0.36 0.71 16 36 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 37 H 0.04 0.88 7.61 -51.93 -0.40 0.48 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.12 1.55 7.49 -51.93 -0.39 1.16 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 342.60 15.07 5.16 5.16 Total: -1.00 -33.66 342.60 -8.44 -42.10 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -6.05 Total: -2.27 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: 0.37 Total: 5.71 kcal Atomic # 7 Polarization: -66.54 SS G_CDS: -0.54 Total: -67.07 kcal Atomic # 8 Polarization: -49.92 SS G_CDS: -1.71 Total: -51.64 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 52.39 SS G_CDS: -0.66 Total: 51.74 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.66 -8.44 -42.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352134463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.127 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds