Wall clock time and date at job start Fri Apr 10 2020 17:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47158 * 2 1 4 4 C 1.45649 * 117.70304 * 90.00203 * 3 2 1 5 5 C 1.52987 * 110.76952 * 158.07663 * 4 3 2 6 6 N 1.47263 * 108.19058 * 46.72612 * 5 4 3 7 7 S 1.65599 * 121.35805 * 118.47591 * 6 5 4 8 8 O 1.42099 * 106.40280 * 23.55619 * 7 6 5 9 9 O 1.42095 * 106.40405 * 156.48326 * 7 6 5 10 10 N 1.65604 * 107.21597 * 270.02074 * 7 6 5 11 11 C 1.46502 * 119.99846 * 269.99818 * 10 7 6 12 12 C 1.46496 * 120.00162 * 89.99843 * 10 7 6 13 13 C 1.50697 * 109.47071 * 95.00025 * 12 10 7 14 14 H 1.07995 * 119.99988 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99879 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00086 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99998 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47521 * 89.99725 * 17 15 13 19 19 H 1.48505 * 109.47126 * 210.00124 * 17 15 13 20 20 H 1.48499 * 109.47083 * 329.99564 * 17 15 13 21 21 C 1.47055 * 117.29053 * 298.49200 * 6 5 4 22 22 C 1.33560 * 117.64673 * 269.88495 * 3 2 1 23 23 O 1.21285 * 118.62618 * 4.34958 * 22 3 2 24 24 H 1.09000 * 109.47619 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47498 * 300.00357 * 1 2 3 26 26 H 1.09004 * 109.47126 * 60.00251 * 1 2 3 27 27 H 1.09003 * 109.47231 * 239.99372 * 2 1 3 28 28 H 1.09003 * 109.47005 * 120.00289 * 2 1 3 29 29 H 1.09001 * 109.21934 * 37.73892 * 4 3 2 30 30 H 1.09004 * 109.17709 * 278.38193 * 4 3 2 31 31 H 1.08996 * 109.71825 * 287.04560 * 5 4 3 32 32 H 1.09000 * 109.71760 * 166.39875 * 5 4 3 33 33 H 1.09000 * 109.47126 * 90.00139 * 11 10 7 34 34 H 1.08998 * 109.46915 * 209.99790 * 11 10 7 35 35 H 1.08996 * 109.47457 * 330.00345 * 11 10 7 36 36 H 1.09004 * 109.47231 * 215.00192 * 12 10 7 37 37 H 1.08998 * 109.47072 * 334.99648 * 12 10 7 38 38 H 0.97002 * 120.00680 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.56819 * 162.56302 * 21 6 5 40 40 H 1.09004 * 109.56988 * 282.79932 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2440 2.0196 1.2895 5 6 3.2233 3.1870 1.1529 6 7 2.8127 3.9983 -0.0055 7 16 2.3674 5.5839 0.1673 8 8 2.9799 6.0446 1.3639 9 8 2.5726 6.1984 -1.0974 10 7 0.7340 5.6075 0.4391 11 6 -0.1953 5.6961 -0.6900 12 6 0.2183 5.5398 1.8086 13 6 -0.0403 6.9345 2.3175 14 1 0.1592 7.7861 1.6840 15 6 -0.5315 7.1234 3.5919 16 7 -0.7739 6.0864 4.3636 17 14 -0.8527 8.8521 4.2225 18 1 -2.2459 9.2478 3.8946 19 1 -0.6621 8.8853 5.6949 20 1 0.0948 9.7976 3.5794 21 6 2.8138 3.3430 -1.3220 22 6 2.2271 1.9647 -1.1831 23 8 1.9293 1.3586 -2.1906 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 2.6534 1.2874 1.9856 30 1 1.2949 2.3908 1.6764 31 1 4.2317 2.8046 0.9953 32 1 3.1974 3.7963 2.0563 33 1 -0.4505 4.6924 -1.0300 34 1 -1.1010 6.2144 -0.3753 35 1 0.2743 6.2472 -1.5047 36 1 -0.7115 4.9710 1.8191 37 1 0.9513 5.0494 2.4491 38 1 -1.1198 6.2191 5.2600 39 1 2.2141 3.9264 -2.0207 40 1 3.8364 3.2689 -1.6921 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352134463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:53 Heat of formation + Delta-G solvation = -120.185897 kcal Electronic energy + Delta-G solvation = -24978.505783 eV Core-core repulsion = 21340.671065 eV Total energy + Delta-G solvation = -3637.834718 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.50282 -38.43952 -37.88235 -37.24144 -36.91268 -36.39582 -34.49981 -31.99967 -30.92481 -29.66501 -27.54033 -26.78741 -25.00064 -24.22431 -23.67131 -20.66303 -19.40818 -19.01848 -18.49594 -18.40539 -18.31211 -17.19277 -17.07789 -16.86235 -16.42929 -15.83362 -15.14704 -15.02059 -14.98465 -14.80136 -14.49192 -14.10355 -14.03315 -13.90849 -13.72675 -13.39702 -13.29625 -13.18725 -13.05784 -12.95060 -12.85820 -12.77579 -12.49711 -12.44140 -12.36446 -12.01246 -11.83447 -11.75728 -11.33909 -10.58133 -10.16269 -9.81679 -9.77548 -8.19898 -6.30789 -0.48405 1.40281 1.42294 1.44775 1.52509 1.78679 2.00209 2.39727 2.51185 3.11406 3.22887 3.40751 3.62046 3.94231 4.05477 4.13394 4.18632 4.29302 4.38174 4.40339 4.52303 4.56390 4.63548 4.70669 4.77672 4.82512 4.95687 5.01037 5.01387 5.12933 5.22170 5.30991 5.46655 5.51366 5.69753 5.89940 6.11491 6.34771 6.76591 7.00414 7.38025 8.87333 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018218 B = 0.005301 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.594645 B = 5280.689319 C = 5933.589084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.594 5.594 4 C 0.097 3.903 5 C 0.100 3.900 6 N -1.009 6.009 7 S 2.796 3.204 8 O -0.992 6.992 9 O -1.003 7.003 10 N -1.003 6.003 11 C 0.091 3.909 12 C 0.276 3.724 13 C -0.551 4.551 14 H 0.049 0.951 15 C 0.017 3.983 16 N -0.920 5.920 17 Si 0.952 3.048 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.114 3.886 22 C 0.512 3.488 23 O -0.581 6.581 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.026 0.974 38 H 0.268 0.732 39 H 0.115 0.885 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 -12.463 -6.215 15.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.021 4.021 3 N -0.325 5.325 4 C -0.027 4.027 5 C -0.025 4.025 6 N -0.851 5.851 7 S 2.805 3.195 8 O -0.976 6.976 9 O -0.987 6.987 10 N -0.844 5.844 11 C -0.055 4.055 12 C 0.152 3.848 13 C -0.590 4.590 14 H 0.067 0.933 15 C -0.183 4.183 16 N -0.559 5.559 17 Si 0.777 3.223 18 H -0.194 1.194 19 H -0.202 1.202 20 H -0.200 1.200 21 C -0.014 4.014 22 C 0.299 3.701 23 O -0.462 6.462 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.133 0.867 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.343 -12.036 -6.588 15.117 hybrid contribution -0.745 0.785 0.545 1.211 sum 5.598 -11.252 -6.043 13.945 Atomic orbital electron populations 1.22052 0.95969 1.02951 1.01144 1.21705 0.94622 0.81496 1.04252 1.47373 1.64009 1.15274 1.05839 1.21979 1.00140 0.96189 0.84387 1.22049 0.99824 0.92329 0.88312 1.58444 1.82035 1.30877 1.13714 1.01438 0.72896 0.73170 0.71987 1.93580 1.76022 1.79089 1.48875 1.93509 1.85884 1.74861 1.44401 1.57601 1.24307 1.88603 1.13929 1.21505 0.94724 1.01742 0.87496 1.18606 0.94551 0.95759 0.75870 1.21816 1.43684 0.93920 0.99589 0.93266 1.25645 0.95080 1.00802 0.96725 1.69975 1.45397 1.31150 1.09397 0.85651 0.78705 0.80242 0.77697 1.19440 1.20243 1.20049 1.21631 1.04961 0.90103 0.84669 1.20434 0.77937 0.88608 0.83153 1.90713 1.53578 1.65219 1.36644 0.89739 0.92697 0.94772 0.90584 0.87209 0.85447 0.92048 0.86822 0.87801 0.92119 0.90901 0.90599 0.95810 0.95599 0.92340 0.86727 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 10.23 71.98 0.74 -2.45 16 2 C 0.10 1.82 5.89 86.38 0.51 2.33 16 3 N -0.59 -12.88 2.81 -826.11 -2.32 -15.20 16 4 C 0.10 1.86 6.58 86.54 0.57 2.43 16 5 C 0.10 2.17 6.53 86.23 0.56 2.74 16 6 N -1.01 -27.64 3.36 -517.15 -1.74 -29.38 16 7 S 2.80 104.73 6.09 -56.49 -0.34 104.39 16 8 O -0.99 -44.40 15.82 -128.00 -2.02 -46.42 16 9 O -1.00 -39.39 15.70 -128.00 -2.01 -41.40 16 10 N -1.00 -40.06 3.23 -543.24 -1.75 -41.81 16 11 C 0.09 3.06 10.68 127.77 1.36 4.43 16 12 C 0.28 13.24 5.08 85.63 0.43 13.67 16 13 C -0.55 -30.22 9.38 25.60 0.24 -29.98 16 14 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 15 C 0.02 0.96 5.46 84.66 0.46 1.42 16 16 N -0.92 -51.60 13.29 21.45 0.28 -51.31 16 17 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 C 0.11 2.78 6.41 85.45 0.55 3.33 16 22 C 0.51 13.35 7.58 87.76 0.66 14.02 16 23 O -0.58 -18.52 16.26 -3.05 -0.05 -18.57 16 24 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 26 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 1.53 7.23 -2.39 -0.02 1.51 16 28 H 0.11 1.26 7.80 -2.39 -0.02 1.25 16 29 H 0.13 1.50 7.84 -2.39 -0.02 1.48 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.10 2.61 7.07 -2.39 -0.02 2.59 16 33 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 35 H 0.08 2.40 7.02 -2.39 -0.02 2.38 16 36 H 0.02 1.18 8.11 -2.38 -0.02 1.16 16 37 H 0.03 1.29 7.61 -2.39 -0.02 1.27 16 38 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.11 2.88 7.49 -2.39 -0.02 2.87 16 40 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -72.33 342.60 -0.81 -73.14 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.03 Total: 9.10 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.09 Total: 11.94 kcal Atomic # 7 Polarization: -132.17 SS G_CDS: -5.53 Total: -137.70 kcal Atomic # 8 Polarization: -102.31 SS G_CDS: -4.08 Total: -106.39 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 104.73 SS G_CDS: -0.34 Total: 104.39 kcal Total: -72.33 -0.81 -73.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352134463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.046 kcal (2) G-P(sol) polarization free energy of solvation -72.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds