Wall clock time and date at job start Fri Apr 10 2020 17:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21254 * 119.99835 * 2 1 4 4 C 1.47178 * 120.00570 * 179.97438 * 2 1 3 5 5 C 1.39892 * 120.13670 * 0.02562 * 4 2 1 6 6 C 1.37912 * 119.96744 * 179.97438 * 5 4 2 7 7 C 1.38302 * 120.24862 * 0.02874 * 6 5 4 8 8 C 1.38983 * 120.27975 * 359.97438 * 7 6 5 9 9 N 1.39982 * 119.98434 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00051 * 144.88289 * 9 8 7 11 11 O 1.21582 * 120.00196 * 4.61861 * 10 9 8 12 12 N 1.34778 * 119.99586 * 184.62197 * 10 9 8 13 13 C 1.46499 * 119.99489 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47069 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99869 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00121 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99906 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99881 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99646 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00185 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46849 * 60.00033 * 21 19 17 23 23 H 1.48496 * 109.47115 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47268 * 300.00285 * 21 19 17 25 25 C 1.38560 * 120.03268 * 359.97438 * 8 7 6 26 26 H 1.09003 * 109.46936 * 239.99990 * 1 2 3 27 27 H 1.08994 * 109.47301 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46770 * 120.00534 * 1 2 3 29 29 H 1.08001 * 120.01495 * 359.97438 * 5 4 2 30 30 H 1.08000 * 119.87491 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.85991 * 180.02562 * 7 6 5 32 32 H 0.97003 * 120.00301 * 324.88575 * 9 8 7 33 33 H 0.96998 * 120.00364 * 359.97438 * 12 10 9 34 34 H 1.09007 * 109.46841 * 299.99295 * 13 12 10 35 35 H 1.08998 * 109.47854 * 59.99222 * 13 12 10 36 36 H 0.97000 * 119.99941 * 359.97438 * 16 14 13 37 37 H 0.97006 * 120.00296 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.12557 * 179.74291 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2745 0.0006 5 6 1.5466 -2.4878 0.0006 6 6 2.2398 -3.6800 0.0006 7 6 3.6228 -3.6818 0.0012 8 6 4.3251 -2.4825 0.0012 9 7 5.7249 -2.4915 0.0013 10 6 6.4050 -1.5411 -0.6701 11 8 5.8060 -0.6285 -1.2055 12 7 7.7491 -1.6024 -0.7480 13 6 8.4883 -0.5690 -1.4773 14 6 9.9641 -0.8674 -1.4134 15 8 10.3595 -1.8467 -0.8169 16 7 10.8447 -0.0462 -2.0190 17 6 12.1872 -0.3175 -1.9604 18 1 12.5393 -1.1895 -1.4292 19 6 13.0949 0.5289 -2.5852 20 7 12.6665 1.5896 -3.2319 21 14 14.9242 0.1590 -2.5060 22 1 15.1881 -1.1669 -3.1207 23 1 15.6734 1.2061 -3.2458 24 1 15.3652 0.1438 -1.0881 25 6 3.6404 -1.2779 0.0002 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 0.4666 -2.4907 0.0006 30 1 1.7006 -4.6158 0.0002 31 1 4.1593 -4.6191 0.0007 32 1 6.2055 -3.1818 0.4845 33 1 8.2271 -2.3302 -0.3206 34 1 8.1645 -0.5568 -2.5181 35 1 8.2948 0.4038 -1.0252 36 1 10.5284 0.7368 -2.4964 37 1 13.3002 2.1807 -3.6678 38 1 4.1847 -0.3450 0.0044 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353265248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:03 Heat of formation + Delta-G solvation = -73.048963 kcal Electronic energy + Delta-G solvation = -23304.616137 eV Core-core repulsion = 19533.381478 eV Total energy + Delta-G solvation = -3771.234658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81152 -39.71158 -38.53945 -37.94939 -34.92589 -34.51186 -33.76421 -31.83355 -31.41136 -30.58310 -29.24861 -27.36193 -24.59315 -24.05498 -22.88008 -20.86615 -20.13347 -19.62017 -18.55244 -18.06965 -17.61596 -16.50641 -15.96564 -15.71988 -15.62576 -15.36153 -15.16786 -14.83103 -14.63521 -14.36476 -14.16542 -13.92752 -13.80635 -13.47276 -12.95081 -12.65819 -12.39201 -12.23895 -12.17315 -12.02547 -11.75653 -11.64746 -11.12409 -10.57985 -10.52194 -10.33421 -10.05077 -9.93547 -9.65011 -9.17922 -8.96575 -8.67099 -8.28633 -8.12562 -6.53201 -3.95616 0.45293 1.14846 2.19386 2.54559 3.11614 3.15037 3.20582 3.24222 3.63659 3.71617 3.81132 4.05534 4.25950 4.57932 4.71987 4.82275 4.84071 4.91813 5.05055 5.09419 5.15146 5.25282 5.32828 5.58682 5.70310 5.84657 5.93982 6.01361 6.04837 6.09084 6.15666 6.27743 6.60280 6.79239 6.87541 7.36318 7.43893 7.89384 7.99055 8.42016 8.55838 9.02108 9.36541 9.84077 10.63474 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.030388 B = 0.002361 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.198303 B =11857.386318 C =12654.914706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.391 3.609 3 O -0.449 6.449 4 C -0.156 4.156 5 C -0.096 4.096 6 C -0.114 4.114 7 C -0.120 4.120 8 C 0.161 3.839 9 N -0.689 5.689 10 C 0.702 3.298 11 O -0.576 6.576 12 N -0.716 5.716 13 C 0.127 3.873 14 C 0.427 3.573 15 O -0.599 6.599 16 N -0.547 5.547 17 C -0.307 4.307 18 H 0.105 0.895 19 C 0.026 3.974 20 N -0.894 5.894 21 Si 0.935 3.065 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.272 1.272 25 C -0.063 4.063 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.410 0.590 33 H 0.409 0.591 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.397 0.603 37 H 0.275 0.725 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.834 -9.147 6.391 25.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.268 3.732 3 O -0.324 6.324 4 C -0.158 4.158 5 C -0.115 4.115 6 C -0.133 4.133 7 C -0.141 4.141 8 C 0.066 3.934 9 N -0.337 5.337 10 C 0.402 3.598 11 O -0.453 6.453 12 N -0.373 5.373 13 C -0.002 4.002 14 C 0.213 3.787 15 O -0.486 6.486 16 N -0.182 5.182 17 C -0.436 4.436 18 H 0.123 0.877 19 C -0.177 4.177 20 N -0.533 5.533 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.084 4.084 26 H 0.111 0.889 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.245 0.755 33 H 0.247 0.753 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.230 0.770 37 H 0.085 0.915 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -22.531 -8.195 6.133 24.748 hybrid contribution 1.251 -0.495 0.052 1.346 sum -21.281 -8.690 6.185 23.804 Atomic orbital electron populations 1.22233 0.93695 1.05110 1.04424 1.22517 0.91603 0.87661 0.71410 1.90587 1.72134 1.34227 1.35422 1.20424 0.93974 0.94936 1.06476 1.21352 0.99976 0.91402 0.98809 1.20865 0.93298 0.98210 1.00877 1.21161 0.94698 0.96683 1.01541 1.17433 0.81950 0.93671 1.00382 1.42585 1.04341 1.32284 1.54519 1.15856 0.82039 0.82327 0.79567 1.90951 1.67888 1.34914 1.51517 1.44763 1.04000 1.30648 1.57879 1.20861 0.90842 0.91015 0.97434 1.19699 0.86882 0.86373 0.85746 1.90488 1.79428 1.30298 1.48375 1.41780 1.06466 1.23946 1.45966 1.19677 0.80698 1.10649 1.32566 0.87705 1.25337 1.01027 0.95271 0.96056 1.69606 1.36311 1.13671 1.33752 0.85860 0.81290 0.78124 0.78620 1.19762 1.20828 1.19760 1.21700 0.93033 0.99027 0.94595 0.88880 0.89744 0.88852 0.85118 0.85063 0.85186 0.75455 0.75337 0.89719 0.89686 0.76959 0.91470 0.82791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.24 8.93 36.01 0.32 -0.91 16 2 C 0.39 4.40 7.23 -30.68 -0.22 4.18 16 3 O -0.45 -7.07 17.08 5.58 0.10 -6.97 16 4 C -0.16 -1.75 5.87 -105.09 -0.62 -2.36 16 5 C -0.10 -0.75 9.47 -39.08 -0.37 -1.12 16 6 C -0.11 -0.83 10.02 -39.68 -0.40 -1.23 16 7 C -0.12 -1.05 9.96 -39.28 -0.39 -1.44 16 8 C 0.16 1.93 6.29 -83.74 -0.53 1.41 16 9 N -0.69 -8.35 5.34 -14.26 -0.08 -8.42 16 10 C 0.70 11.28 8.41 -86.91 -0.73 10.55 16 11 O -0.58 -11.19 13.78 5.29 0.07 -11.12 16 12 N -0.72 -11.71 5.53 -66.41 -0.37 -12.07 16 13 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 14 C 0.43 9.71 7.85 -10.98 -0.09 9.62 16 15 O -0.60 -15.09 15.24 5.55 0.08 -15.00 16 16 N -0.55 -13.52 5.29 -10.96 -0.06 -13.57 16 17 C -0.31 -8.29 9.68 -14.93 -0.14 -8.44 16 18 H 0.11 2.94 7.16 -52.49 -0.38 2.56 16 19 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 20 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 21 Si 0.93 20.48 29.55 -169.99 -5.02 15.46 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 C -0.06 -0.87 8.23 -38.90 -0.32 -1.20 16 26 H 0.09 0.37 8.09 -51.93 -0.42 -0.05 16 27 H 0.08 0.54 8.12 -51.93 -0.42 0.12 16 28 H 0.09 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.13 0.58 7.04 -52.49 -0.37 0.21 16 30 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.41 3.62 8.84 -40.82 -0.36 3.26 16 33 H 0.41 6.35 7.46 -40.82 -0.30 6.05 16 34 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 35 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 36 H 0.40 9.45 7.90 -40.82 -0.32 9.13 16 37 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 38 H 0.15 2.65 5.82 -52.49 -0.31 2.35 16 LS Contribution 338.98 15.07 5.11 5.11 Total: -1.00 -34.35 338.98 -7.18 -41.52 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -4.13 Total: 16.27 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: -3.61 Total: 11.95 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: 0.22 Total: -57.21 kcal Atomic # 8 Polarization: -33.34 SS G_CDS: 0.25 Total: -33.09 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.35 -7.18 -41.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353265248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.525 kcal (2) G-P(sol) polarization free energy of solvation -34.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds