Wall clock time and date at job start Fri Apr 10 2020 17:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21254 * 119.99835 * 2 1 4 4 C 1.47178 * 120.00570 * 179.97438 * 2 1 3 5 5 C 1.39892 * 120.13670 * 0.02562 * 4 2 1 6 6 C 1.37912 * 119.96744 * 179.97438 * 5 4 2 7 7 C 1.38302 * 120.24862 * 0.02874 * 6 5 4 8 8 C 1.38983 * 120.27975 * 359.97438 * 7 6 5 9 9 N 1.39982 * 119.98434 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00051 * 144.88289 * 9 8 7 11 11 O 1.21582 * 120.00196 * 4.61861 * 10 9 8 12 12 N 1.34778 * 119.99586 * 184.62197 * 10 9 8 13 13 C 1.46499 * 119.99489 * 180.02562 * 12 10 9 14 14 C 1.50704 * 109.47069 * 179.97438 * 13 12 10 15 15 O 1.21287 * 119.99869 * 359.97438 * 14 13 12 16 16 N 1.34781 * 120.00121 * 179.97438 * 14 13 12 17 17 C 1.37096 * 119.99906 * 179.97438 * 16 14 13 18 18 H 1.08000 * 119.99881 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99646 * 179.97438 * 17 16 14 20 20 N 1.31407 * 120.00185 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99826 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46849 * 60.00033 * 21 19 17 23 23 H 1.48496 * 109.47115 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47268 * 300.00285 * 21 19 17 25 25 C 1.38560 * 120.03268 * 359.97438 * 8 7 6 26 26 H 1.09003 * 109.46936 * 239.99990 * 1 2 3 27 27 H 1.08994 * 109.47301 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.46770 * 120.00534 * 1 2 3 29 29 H 1.08001 * 120.01495 * 359.97438 * 5 4 2 30 30 H 1.08000 * 119.87491 * 180.02562 * 6 5 4 31 31 H 1.08000 * 119.85991 * 180.02562 * 7 6 5 32 32 H 0.97003 * 120.00301 * 324.88575 * 9 8 7 33 33 H 0.96998 * 120.00364 * 359.97438 * 12 10 9 34 34 H 1.09007 * 109.46841 * 299.99295 * 13 12 10 35 35 H 1.08998 * 109.47854 * 59.99222 * 13 12 10 36 36 H 0.97000 * 119.99941 * 359.97438 * 16 14 13 37 37 H 0.97006 * 120.00296 * 179.97438 * 20 19 17 38 38 H 1.08001 * 120.12557 * 179.74291 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2430 -1.2745 0.0006 5 6 1.5466 -2.4878 0.0006 6 6 2.2398 -3.6800 0.0006 7 6 3.6228 -3.6818 0.0012 8 6 4.3251 -2.4825 0.0012 9 7 5.7249 -2.4915 0.0013 10 6 6.4050 -1.5411 -0.6701 11 8 5.8060 -0.6285 -1.2055 12 7 7.7491 -1.6024 -0.7480 13 6 8.4883 -0.5690 -1.4773 14 6 9.9641 -0.8674 -1.4134 15 8 10.3595 -1.8467 -0.8169 16 7 10.8447 -0.0462 -2.0190 17 6 12.1872 -0.3175 -1.9604 18 1 12.5393 -1.1895 -1.4292 19 6 13.0949 0.5289 -2.5852 20 7 12.6665 1.5896 -3.2319 21 14 14.9242 0.1590 -2.5060 22 1 15.1881 -1.1669 -3.1207 23 1 15.6734 1.2061 -3.2458 24 1 15.3652 0.1438 -1.0881 25 6 3.6404 -1.2779 0.0002 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 0.4666 -2.4907 0.0006 30 1 1.7006 -4.6158 0.0002 31 1 4.1593 -4.6191 0.0007 32 1 6.2055 -3.1818 0.4845 33 1 8.2271 -2.3302 -0.3206 34 1 8.1645 -0.5568 -2.5181 35 1 8.2948 0.4038 -1.0252 36 1 10.5284 0.7368 -2.4964 37 1 13.3002 2.1807 -3.6678 38 1 4.1847 -0.3450 0.0044 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353265248.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:02 Heat of formation + Delta-G solvation = -99.593382 kcal Electronic energy + Delta-G solvation = -23305.767189 eV Core-core repulsion = 19533.381478 eV Total energy + Delta-G solvation = -3772.385711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.89337 -40.77240 -40.15462 -39.05818 -36.33006 -35.90464 -35.42920 -33.40635 -32.60346 -31.40517 -30.10820 -28.81001 -26.43968 -24.81767 -23.83971 -21.99588 -21.45358 -20.94633 -20.16330 -19.67580 -18.58292 -17.51260 -17.36848 -17.09114 -16.69232 -16.55738 -16.37498 -16.03120 -16.01318 -15.81188 -15.55692 -15.26829 -14.91281 -14.54480 -14.03007 -13.88658 -13.55743 -13.54666 -13.20841 -12.98934 -12.91364 -12.79508 -12.56990 -12.48895 -12.14731 -11.63901 -11.58159 -11.24655 -10.78935 -10.60123 -10.35317 -10.12105 -9.95476 -9.17524 -8.52714 -6.03530 -0.32635 0.35290 1.33837 1.36702 1.41628 1.44484 1.53940 1.85504 1.95668 2.26640 2.85585 2.90502 3.10074 3.14246 3.23345 3.94055 4.07054 4.14510 4.16940 4.33211 4.35007 4.38333 4.41235 4.52592 4.67246 4.71605 4.93132 5.15079 5.15231 5.28638 5.35097 5.36072 5.40567 5.50661 5.81884 5.89304 5.98191 6.44757 6.57001 6.82749 7.00640 7.30728 7.41711 7.90434 8.63955 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.030388 B = 0.002361 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.198303 B =11857.386318 C =12654.914706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.385 3.615 3 O -0.515 6.515 4 C -0.178 4.178 5 C -0.074 4.074 6 C -0.105 4.105 7 C -0.107 4.107 8 C 0.132 3.868 9 N -0.673 5.673 10 C 0.702 3.298 11 O -0.613 6.613 12 N -0.714 5.714 13 C 0.140 3.860 14 C 0.434 3.566 15 O -0.622 6.622 16 N -0.558 5.558 17 C -0.338 4.338 18 H 0.088 0.912 19 C -0.012 4.012 20 N -0.917 5.917 21 Si 0.999 3.001 22 H -0.268 1.268 23 H -0.272 1.272 24 H -0.269 1.269 25 C -0.100 4.100 26 H 0.126 0.874 27 H 0.079 0.921 28 H 0.122 0.878 29 H 0.176 0.824 30 H 0.177 0.823 31 H 0.160 0.840 32 H 0.425 0.575 33 H 0.414 0.586 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.100 -11.934 6.695 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.267 3.733 3 O -0.394 6.394 4 C -0.180 4.180 5 C -0.092 4.092 6 C -0.123 4.123 7 C -0.128 4.128 8 C 0.037 3.963 9 N -0.322 5.322 10 C 0.402 3.598 11 O -0.493 6.493 12 N -0.372 5.372 13 C 0.012 3.988 14 C 0.221 3.779 15 O -0.511 6.511 16 N -0.194 5.194 17 C -0.467 4.467 18 H 0.106 0.894 19 C -0.212 4.212 20 N -0.556 5.556 21 Si 0.822 3.178 22 H -0.193 1.193 23 H -0.197 1.197 24 H -0.194 1.194 25 C -0.121 4.121 26 H 0.144 0.856 27 H 0.098 0.902 28 H 0.140 0.860 29 H 0.193 0.807 30 H 0.194 0.806 31 H 0.177 0.823 32 H 0.264 0.736 33 H 0.252 0.748 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -24.845 -11.036 6.464 27.944 hybrid contribution 1.794 0.271 0.001 1.814 sum -23.051 -10.766 6.465 26.250 Atomic orbital electron populations 1.22277 0.89214 1.05868 1.07120 1.23440 0.94060 0.86829 0.68980 1.90566 1.73792 1.36208 1.38841 1.20643 0.93039 0.96652 1.07670 1.21850 1.02070 0.89818 0.95511 1.21454 0.92657 0.99777 0.98418 1.21557 0.95716 0.96170 0.99310 1.17691 0.81516 0.94453 1.02634 1.42350 1.04754 1.31475 1.53648 1.15964 0.81652 0.82602 0.79594 1.90942 1.68500 1.36643 1.53242 1.44624 1.04195 1.30345 1.58000 1.20628 0.87928 0.91877 0.98406 1.20302 0.88285 0.85257 0.84031 1.90463 1.80440 1.31165 1.48987 1.41838 1.06268 1.24503 1.46761 1.19720 0.82082 1.10994 1.33936 0.89374 1.26173 1.05103 0.94795 0.95173 1.69680 1.37798 1.14189 1.33978 0.84901 0.75982 0.78222 0.78723 1.19329 1.19683 1.19435 1.21504 0.94693 0.98015 0.97850 0.85614 0.90231 0.86026 0.80688 0.80585 0.82290 0.73587 0.74759 0.88857 0.89139 0.76725 0.91025 0.87670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.87 8.93 71.24 0.64 -1.23 16 2 C 0.39 8.80 7.23 28.04 0.20 9.00 16 3 O -0.51 -17.75 17.08 -2.95 -0.05 -17.80 16 4 C -0.18 -3.90 5.87 -20.17 -0.12 -4.02 16 5 C -0.07 -0.84 9.47 22.59 0.21 -0.62 16 6 C -0.10 -0.99 10.02 22.21 0.22 -0.77 16 7 C -0.11 -1.53 9.96 22.46 0.22 -1.30 16 8 C 0.13 3.12 6.29 38.09 0.24 3.36 16 9 N -0.67 -16.44 5.34 -317.29 -1.70 -18.13 16 10 C 0.70 23.43 8.41 179.05 1.51 24.94 16 11 O -0.61 -25.44 13.78 -3.97 -0.05 -25.49 16 12 N -0.71 -23.91 5.53 -482.29 -2.67 -26.58 16 13 C 0.14 5.30 6.15 85.63 0.53 5.82 16 14 C 0.43 20.21 7.85 87.66 0.69 20.90 16 15 O -0.62 -31.95 15.24 -3.05 -0.05 -31.99 16 16 N -0.56 -28.38 5.29 -306.98 -1.62 -30.00 16 17 C -0.34 -18.71 9.68 84.04 0.81 -17.89 16 18 H 0.09 5.08 7.16 -2.91 -0.02 5.06 16 19 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 20 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 21 Si 1.00 41.91 29.55 68.60 2.03 43.94 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 25 C -0.10 -2.93 8.23 22.71 0.19 -2.75 16 26 H 0.13 0.46 8.09 -2.39 -0.02 0.44 16 27 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 28 H 0.12 0.56 8.09 -2.39 -0.02 0.54 16 29 H 0.18 0.41 7.04 -2.91 -0.02 0.39 16 30 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 31 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.43 7.22 8.84 -92.71 -0.82 6.40 16 33 H 0.41 13.01 7.46 -92.71 -0.69 12.32 16 34 H 0.09 3.40 8.14 -2.38 -0.02 3.38 16 35 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 36 H 0.40 19.61 7.90 -92.71 -0.73 18.88 16 37 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 38 H 0.11 4.11 5.82 -2.91 -0.02 4.09 16 Total: -1.00 -80.96 338.98 0.89 -80.08 By element: Atomic # 1 Polarization: 40.81 SS G_CDS: -1.09 Total: 39.72 kcal Atomic # 6 Polarization: 29.48 SS G_CDS: 5.81 Total: 35.29 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -5.70 Total: -123.73 kcal Atomic # 8 Polarization: -75.13 SS G_CDS: -0.15 Total: -75.28 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -80.96 0.89 -80.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353265248.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.518 kcal (2) G-P(sol) polarization free energy of solvation -80.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds