Wall clock time and date at job start Fri Apr 10 2020 17:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21283 * 119.99968 * 2 1 4 4 N 1.34774 * 120.00495 * 180.02562 * 2 1 3 5 5 C 1.39459 * 120.00361 * 185.26761 * 4 2 1 6 6 C 1.39376 * 120.39376 * 32.88081 * 5 4 2 7 7 C 1.38294 * 118.42994 * 179.97438 * 6 5 4 8 8 C 1.39483 * 119.14504 * 359.97438 * 7 6 5 9 9 C 1.47914 * 119.64125 * 179.97438 * 8 7 6 10 10 O 1.21550 * 119.99820 * 0.02562 * 9 8 7 11 11 N 1.34780 * 120.00523 * 180.02562 * 9 8 7 12 12 C 1.47574 * 134.49330 * 180.02562 * 11 9 8 13 13 C 1.53953 * 86.11734 * 155.35840 * 12 11 9 14 14 O 1.42898 * 113.73981 * 269.15525 * 13 12 11 15 15 C 1.50696 * 113.74382 * 137.94749 * 13 12 11 16 16 H 1.08003 * 119.99882 * 1.93070 * 15 13 12 17 17 C 1.37879 * 119.99954 * 181.92591 * 15 13 12 18 18 N 1.31515 * 119.99689 * 359.97438 * 17 15 13 19 19 Si 1.86804 * 119.99999 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.46972 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.46886 * 300.00171 * 19 17 15 22 22 H 1.48502 * 109.46875 * 60.00080 * 19 17 15 23 23 C 1.47811 * 134.45195 * 359.86455 * 11 9 8 24 24 N 1.32809 * 120.71670 * 0.25580 * 8 7 6 25 25 C 1.31351 * 121.71364 * 359.47404 * 24 8 7 26 26 H 1.09007 * 109.46521 * 239.99555 * 1 2 3 27 27 H 1.08999 * 109.47156 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.47128 * 120.00164 * 1 2 3 29 29 H 0.97003 * 119.99749 * 5.26713 * 4 2 1 30 30 H 1.07995 * 120.78389 * 359.95773 * 6 5 4 31 31 H 1.08000 * 120.42594 * 179.97438 * 7 6 5 32 32 H 1.08993 * 113.77344 * 41.05482 * 12 11 9 33 33 H 1.09006 * 113.86986 * 269.66645 * 12 11 9 34 34 H 0.96697 * 113.99770 * 178.07155 * 14 13 12 35 35 H 0.97005 * 119.99741 * 180.02562 * 18 17 15 36 36 H 1.09001 * 113.76874 * 90.37752 * 23 11 9 37 37 H 1.09002 * 113.83873 * 318.92122 * 23 11 9 38 38 H 1.07998 * 119.60927 * 180.24821 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5711 -1.1697 0.1104 6 6 4.2203 -0.1927 0.8631 7 6 5.6001 -0.2341 0.9460 8 6 6.2907 -1.2456 0.2785 9 6 7.7666 -1.3000 0.3592 10 8 8.3710 -0.4664 1.0050 11 7 8.4413 -2.2739 -0.2834 12 6 9.8677 -2.6269 -0.4200 13 6 9.3786 -4.0601 -0.6970 14 8 9.2706 -4.8681 0.4767 15 6 10.1161 -4.7470 -1.8174 16 1 10.9271 -4.2410 -2.3201 17 6 9.7556 -6.0215 -2.2006 18 7 8.7685 -6.6378 -1.5879 19 14 10.6703 -6.8733 -3.5889 20 1 10.0946 -8.2249 -3.8049 21 1 10.5375 -6.0734 -4.8330 22 1 12.1063 -6.9986 -3.2318 23 6 8.0486 -3.4187 -1.1319 24 7 5.6377 -2.1571 -0.4334 25 6 4.3277 -2.1501 -0.5290 26 1 -0.3632 -0.5139 0.8900 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 1.6990 -2.0054 -0.0780 30 1 3.6590 0.5786 1.3695 31 1 6.1360 0.5071 1.5202 32 1 10.4354 -2.5275 0.5051 33 1 10.3585 -2.1577 -1.2727 34 1 8.9356 -5.7599 0.3107 35 1 8.5151 -7.5346 -1.8573 36 1 8.0018 -3.1821 -2.1948 37 1 7.1668 -3.9503 -0.7740 38 1 3.8313 -2.9103 -1.1138 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356551228.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:04 Heat of formation + Delta-G solvation = -37.920799 kcal Electronic energy + Delta-G solvation = -24380.886834 eV Core-core repulsion = 20611.175447 eV Total energy + Delta-G solvation = -3769.711387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.05921 -39.78366 -38.78952 -37.16270 -35.35654 -33.88234 -32.33392 -32.14892 -31.28753 -29.58595 -28.18078 -25.51757 -25.11159 -24.20488 -23.29787 -21.16348 -20.23677 -18.80456 -18.15982 -17.49226 -17.32188 -16.61514 -16.45527 -15.71964 -15.25266 -14.92804 -14.84882 -14.61445 -14.28358 -14.06663 -13.68969 -13.52971 -13.13727 -13.00315 -12.74435 -12.62451 -12.45801 -12.13718 -11.89749 -11.48721 -11.14468 -11.00483 -10.93360 -10.53998 -10.47403 -10.21479 -9.93158 -9.71307 -9.36476 -9.17277 -8.70338 -8.48097 -8.27038 -7.73736 -6.32455 -4.42082 0.65092 1.26991 2.14205 2.62608 3.15306 3.20314 3.25492 3.28210 3.53278 4.09365 4.22821 4.24571 4.38363 4.68631 4.73418 4.84835 4.86892 4.92669 5.02674 5.11755 5.37642 5.60330 5.65717 5.78822 5.93549 6.05981 6.14456 6.25695 6.46033 6.56935 6.70721 6.76487 6.91448 6.98943 7.20099 7.65252 7.69386 7.85993 7.90021 8.48907 8.59837 8.77223 9.28131 9.50367 10.74246 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.021109 B = 0.003368 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.116231 B = 8312.777363 C = 9246.354806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.509 3.491 3 O -0.523 6.523 4 N -0.668 5.668 5 C 0.104 3.896 6 C -0.090 4.090 7 C -0.095 4.095 8 C 0.079 3.921 9 C 0.578 3.422 10 O -0.562 6.562 11 N -0.609 5.609 12 C 0.111 3.889 13 C 0.233 3.767 14 O -0.573 6.573 15 C -0.536 4.536 16 H 0.070 0.930 17 C 0.073 3.927 18 N -0.897 5.897 19 Si 0.907 3.093 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.274 1.274 23 C 0.098 3.902 24 N -0.421 5.421 25 C 0.078 3.922 26 H 0.093 0.907 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.415 0.585 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.391 0.609 35 H 0.272 0.728 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.485 6.312 1.392 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.297 3.703 3 O -0.398 6.398 4 N -0.314 5.314 5 C 0.007 3.993 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.060 4.060 9 C 0.366 3.634 10 O -0.443 6.443 11 N -0.340 5.340 12 C -0.011 4.011 13 C 0.191 3.809 14 O -0.385 6.385 15 C -0.574 4.574 16 H 0.088 0.912 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.734 3.266 20 H -0.211 1.211 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.024 4.024 24 N -0.132 5.132 25 C -0.085 4.085 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.252 0.748 30 H 0.166 0.834 31 H 0.168 0.832 32 H 0.090 0.910 33 H 0.106 0.894 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.260 7.378 1.697 17.936 hybrid contribution -0.773 -0.803 -0.737 1.337 sum -17.033 6.574 0.960 18.283 Atomic orbital electron populations 1.21930 0.90330 1.06147 1.04766 1.21109 0.91057 0.83039 0.75055 1.90773 1.70626 1.31210 1.47189 1.43443 1.04844 1.10302 1.72797 1.19004 0.83880 0.98698 0.97740 1.21504 0.94193 0.98967 0.97091 1.22025 0.93588 0.98057 0.97964 1.21283 0.94816 0.92864 0.96992 1.17406 0.85049 0.80439 0.80507 1.90721 1.68937 1.40176 1.44433 1.50096 1.10116 1.26759 1.47000 1.23532 0.82093 0.94738 1.00739 1.19927 0.90130 0.86404 0.84398 1.86048 1.88796 1.30533 1.33100 1.21450 1.18427 1.00713 1.16829 0.91195 1.25052 0.94352 0.96917 0.96679 1.69408 1.27845 1.14432 1.41976 0.86413 0.80033 0.78411 0.81769 1.21076 1.19949 1.19935 1.24285 1.02163 0.82418 0.93513 1.67809 1.08630 1.22453 1.14264 1.22708 0.89325 0.98479 0.98014 0.88837 0.88460 0.88891 0.74801 0.83435 0.83212 0.91022 0.89426 0.75430 0.91761 0.90405 0.90016 0.82021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.32 36.00 0.37 -0.30 16 2 C 0.51 4.46 7.69 -10.99 -0.08 4.38 16 3 O -0.52 -7.05 14.77 5.55 0.08 -6.97 16 4 N -0.67 -5.36 5.33 -9.74 -0.05 -5.41 16 5 C 0.10 1.26 6.31 -83.54 -0.53 0.73 16 6 C -0.09 -1.23 8.75 -39.14 -0.34 -1.58 16 7 C -0.09 -1.51 9.62 -39.10 -0.38 -1.89 16 8 C 0.08 1.48 6.74 -83.02 -0.56 0.92 16 9 C 0.58 12.77 8.03 -12.30 -0.10 12.67 16 10 O -0.56 -13.38 17.04 5.32 0.09 -13.29 16 11 N -0.61 -13.76 3.61 -179.21 -0.65 -14.41 16 12 C 0.11 2.50 8.23 -2.97 -0.02 2.47 16 13 C 0.23 5.72 1.40 -90.85 -0.13 5.60 16 14 O -0.57 -15.01 13.48 -35.23 -0.48 -15.49 16 15 C -0.54 -13.62 8.61 -34.44 -0.30 -13.92 16 16 H 0.07 1.73 7.81 -52.48 -0.41 1.32 16 17 C 0.07 1.82 5.40 -17.82 -0.10 1.73 16 18 N -0.90 -22.81 11.20 55.43 0.62 -22.18 16 19 Si 0.91 19.59 29.54 -169.99 -5.02 14.57 16 20 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 C 0.10 2.24 6.99 -2.85 -0.02 2.22 16 24 N -0.42 -7.38 7.87 -9.65 -0.08 -7.46 16 25 C 0.08 1.04 11.12 -17.34 -0.19 0.84 16 26 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.10 0.42 8.12 -51.93 -0.42 0.00 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.42 1.73 8.82 -40.82 -0.36 1.37 16 30 H 0.15 1.92 6.47 -52.49 -0.34 1.58 16 31 H 0.15 2.29 7.63 -52.49 -0.40 1.89 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.09 1.81 8.09 -51.93 -0.42 1.39 16 34 H 0.39 10.28 6.60 45.56 0.30 10.58 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.08 1.74 8.09 -51.93 -0.42 1.32 16 37 H 0.08 1.90 7.19 -51.93 -0.37 1.53 16 38 H 0.16 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 333.01 15.07 5.02 5.02 Total: -1.00 -32.82 333.01 -6.50 -39.33 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -3.67 Total: 12.41 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: -2.37 Total: 13.89 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -0.15 Total: -49.46 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.30 Total: -35.74 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.82 -6.50 -39.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356551228.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.405 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds