Wall clock time and date at job start Fri Apr 10 2020 17:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46499 * 119.99758 * 2 1 4 4 S 1.65597 * 119.99977 * 180.02562 * 2 1 3 5 5 O 1.42096 * 106.40432 * 329.88299 * 4 2 1 6 6 O 1.42102 * 106.39903 * 196.96467 * 4 2 1 7 7 N 1.65600 * 107.21815 * 83.42353 * 4 2 1 8 8 C 1.36936 * 120.00302 * 263.17625 * 7 4 2 9 9 H 1.07999 * 120.00081 * 123.40370 * 8 7 4 10 10 C 1.38810 * 119.99902 * 303.40534 * 8 7 4 11 11 N 1.31621 * 120.00062 * 159.90086 * 10 8 7 12 12 Si 1.86802 * 119.99797 * 339.90559 * 10 8 7 13 13 H 1.48498 * 109.47333 * 95.33264 * 12 10 8 14 14 H 1.48506 * 109.46773 * 215.33234 * 12 10 8 15 15 H 1.48494 * 109.47477 * 335.33101 * 12 10 8 16 16 C 1.46509 * 119.99818 * 83.17551 * 7 4 2 17 17 C 1.50694 * 109.46940 * 265.00062 * 16 7 4 18 18 O 1.21287 * 120.00551 * 359.97438 * 17 16 7 19 19 N 1.34772 * 120.00018 * 180.27787 * 17 16 7 20 20 C 1.47023 * 125.64632 * 359.41383 * 19 17 16 21 21 C 1.54316 * 107.27551 * 180.97148 * 20 19 17 22 22 C 1.55156 * 102.86375 * 22.52384 * 21 20 19 23 23 C 1.47428 * 125.65292 * 179.72276 * 19 17 16 24 24 H 1.08994 * 109.46903 * 183.90038 * 1 2 3 25 25 H 1.09001 * 109.47248 * 303.89700 * 1 2 3 26 26 H 1.08997 * 109.46808 * 63.89910 * 1 2 3 27 27 H 1.08995 * 109.47578 * 269.99905 * 3 2 1 28 28 H 1.09002 * 109.47365 * 30.00143 * 3 2 1 29 29 H 1.09004 * 109.46697 * 149.99958 * 3 2 1 30 30 H 0.96997 * 119.99734 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.46515 * 145.00044 * 16 7 4 32 32 H 1.09004 * 109.47114 * 25.00060 * 16 7 4 33 33 H 1.09001 * 109.88188 * 300.51075 * 20 19 17 34 34 H 1.08998 * 109.88308 * 61.67963 * 20 19 17 35 35 H 1.09008 * 110.92271 * 264.10920 * 21 20 19 36 36 H 1.08999 * 110.59372 * 140.78966 * 21 20 19 37 37 H 1.09002 * 111.00101 * 206.22284 * 22 21 20 38 38 H 1.09001 * 111.00266 * 82.38255 * 22 21 20 39 39 H 1.09000 * 110.36666 * 274.67361 * 23 19 17 40 40 H 1.09001 * 110.36086 * 36.88994 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 1.4726 -2.3715 0.6829 6 8 3.6229 -1.1298 0.3973 7 7 2.3813 -1.9485 -1.5722 8 6 1.4762 -2.8603 -2.0461 9 1 0.8746 -2.6244 -2.9115 10 6 1.3319 -4.0878 -1.4142 11 7 0.2352 -4.7939 -1.5906 12 14 2.6941 -4.7374 -0.3133 13 1 2.4007 -4.3833 1.0987 14 1 2.7762 -6.2142 -0.4466 15 1 3.9882 -4.1312 -0.7169 16 6 3.4277 -1.4280 -2.4557 17 6 2.8859 -0.2641 -3.2447 18 8 1.7385 0.0952 -3.0852 19 7 3.6745 0.3740 -4.1320 20 6 5.0791 0.0483 -4.4193 21 6 5.5757 1.0550 -5.4782 22 6 4.5983 2.2476 -5.3061 23 6 3.2735 1.5182 -4.9708 24 1 -0.3633 -1.0252 0.0699 25 1 -0.3634 0.5731 0.8530 26 1 -0.3633 0.4521 -0.9229 27 1 2.3792 1.5835 -1.0276 28 1 1.6085 2.0284 0.5139 29 1 3.1500 1.1384 0.5139 30 1 0.1342 -5.6515 -1.1487 31 1 3.7488 -2.2131 -3.1403 32 1 4.2771 -1.0977 -1.8576 33 1 5.6742 0.1396 -3.5106 34 1 5.1517 -0.9659 -4.8120 35 1 5.4986 0.6348 -6.4811 36 1 6.5997 1.3617 -5.2652 37 1 4.5082 2.8156 -6.2321 38 1 4.9088 2.8916 -4.4833 39 1 2.7913 1.1687 -5.8837 40 1 2.6048 2.1778 -4.4179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408007217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:10 Heat of formation + Delta-G solvation = -80.658109 kcal Electronic energy + Delta-G solvation = -25439.934874 eV Core-core repulsion = 21803.814209 eV Total energy + Delta-G solvation = -3636.120664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.65565 -37.21299 -36.16589 -35.20952 -35.05822 -34.61760 -32.10505 -31.48766 -29.17138 -27.42552 -27.18469 -24.08389 -23.66051 -22.71419 -21.19238 -19.16554 -18.92217 -17.71410 -16.82639 -16.54727 -16.31089 -15.96042 -15.30589 -14.84477 -14.56540 -14.18815 -13.94852 -13.58513 -13.52700 -13.32057 -12.96079 -12.62345 -12.52052 -12.36639 -12.13019 -11.91742 -11.59486 -11.54126 -11.43388 -11.35558 -11.31071 -11.25300 -10.87167 -10.85390 -10.69397 -10.39522 -10.08535 -9.78362 -9.49980 -8.76395 -8.38539 -8.20462 -7.87185 -6.45046 -4.21459 1.76218 3.15415 3.21879 3.27759 3.36398 3.51644 3.94907 4.34235 4.44769 4.53198 4.59177 4.78928 4.93702 5.20599 5.23709 5.32354 5.47106 5.57776 5.58968 5.61080 5.72021 5.73053 5.85016 5.93227 5.94404 5.99765 6.04828 6.06729 6.19397 6.26865 6.51958 6.58306 6.71083 6.91764 7.41777 7.70249 7.84094 8.36294 8.68806 9.07675 9.13535 10.59787 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.006642 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.392275 B = 4214.378476 C = 4840.041891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -1.009 6.009 3 C 0.096 3.904 4 S 2.675 3.325 5 O -0.966 6.966 6 O -1.023 7.023 7 N -0.831 5.831 8 C -0.289 4.289 9 H 0.093 0.907 10 C 0.100 3.900 11 N -0.829 5.829 12 Si 0.833 3.167 13 H -0.241 1.241 14 H -0.278 1.278 15 H -0.258 1.258 16 C 0.108 3.892 17 C 0.506 3.494 18 O -0.509 6.509 19 N -0.630 5.630 20 C 0.097 3.903 21 C -0.131 4.131 22 C -0.134 4.134 23 C 0.106 3.894 24 H 0.084 0.916 25 H 0.040 0.960 26 H 0.051 0.949 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.279 0.721 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.088 11.691 -6.566 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.845 5.845 3 C -0.051 4.051 4 S 2.697 3.303 5 O -0.950 6.950 6 O -1.007 7.007 7 N -0.658 5.658 8 C -0.431 4.431 9 H 0.111 0.889 10 C -0.115 4.115 11 N -0.464 5.464 12 Si 0.657 3.343 13 H -0.165 1.165 14 H -0.204 1.204 15 H -0.182 1.182 16 C -0.024 4.024 17 C 0.293 3.707 18 O -0.382 6.382 19 N -0.369 5.369 20 C -0.027 4.027 21 C -0.169 4.169 22 C -0.172 4.172 23 C -0.017 4.017 24 H 0.102 0.898 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.658 11.393 -5.411 15.298 hybrid contribution 0.382 -0.117 0.125 0.419 sum 9.040 11.276 -5.286 15.389 Atomic orbital electron populations 1.21278 0.79524 1.03315 0.99979 1.58087 1.14766 1.21640 1.89982 1.21272 0.96422 0.86606 1.00760 1.07678 0.72876 0.72724 0.76974 1.93508 1.69463 1.59689 1.72301 1.93384 1.38529 1.85142 1.83643 1.53013 1.35945 1.48809 1.28020 1.18638 1.16208 0.92232 1.16062 0.88915 1.25697 0.95782 0.95243 0.94773 1.69778 1.23593 1.13513 1.39551 0.87440 0.82678 0.79794 0.84437 1.16537 1.20397 1.18216 1.21232 0.91355 0.94607 0.95206 1.21644 0.85889 0.84032 0.79099 1.90700 1.17025 1.65356 1.65118 1.48692 1.12590 1.34065 1.41532 1.22041 0.82605 0.99269 0.98765 1.22624 0.99495 0.95608 0.99150 1.22783 0.94984 0.97289 1.02164 1.22115 0.96682 0.88109 0.94756 0.89774 0.94127 0.93007 0.93899 0.92451 0.91432 0.91021 0.87438 0.88728 0.91257 0.91149 0.90597 0.90182 0.90164 0.90723 0.91924 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.11 10.67 59.85 0.64 2.75 16 2 N -1.01 -21.83 3.64 -129.20 -0.47 -22.30 16 3 C 0.10 1.73 10.66 59.85 0.64 2.37 16 4 S 2.68 67.51 4.81 -107.50 -0.52 66.99 16 5 O -0.97 -27.21 11.84 -57.17 -0.68 -27.88 16 6 O -1.02 -25.92 15.36 -57.17 -0.88 -26.80 16 7 N -0.83 -20.42 1.62 -61.08 -0.10 -20.52 16 8 C -0.29 -7.86 9.40 -15.06 -0.14 -8.00 16 9 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 10 C 0.10 2.83 4.64 -17.43 -0.08 2.75 16 11 N -0.83 -23.94 13.97 55.49 0.78 -23.17 16 12 Si 0.83 21.79 25.31 -169.99 -4.30 17.48 16 13 H -0.24 -6.68 6.31 56.52 0.36 -6.32 16 14 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 15 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 16 C 0.11 2.16 5.32 -5.19 -0.03 2.13 16 17 C 0.51 9.64 7.89 -10.99 -0.09 9.55 16 18 O -0.51 -11.34 16.17 5.55 0.09 -11.25 16 19 N -0.63 -9.18 3.33 -170.53 -0.57 -9.75 16 20 C 0.10 1.03 6.48 -3.07 -0.02 1.02 16 21 C -0.13 -1.02 6.95 -24.90 -0.17 -1.19 16 22 C -0.13 -1.12 7.08 -24.59 -0.17 -1.29 16 23 C 0.11 1.28 6.91 -2.53 -0.02 1.27 16 24 H 0.08 1.87 7.04 -51.93 -0.37 1.51 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.04 0.76 7.71 -51.93 -0.40 0.36 16 28 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 29 H 0.07 1.20 7.00 -51.93 -0.36 0.84 16 30 H 0.28 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.11 1.94 8.08 -51.93 -0.42 1.52 16 32 H 0.09 1.76 7.02 -51.93 -0.36 1.40 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.98 8.03 -51.93 -0.42 0.56 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -34.02 335.19 -7.20 -41.22 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -6.16 Total: -0.43 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 0.56 Total: 11.35 kcal Atomic # 7 Polarization: -75.37 SS G_CDS: -0.36 Total: -75.73 kcal Atomic # 8 Polarization: -64.46 SS G_CDS: -1.47 Total: -65.93 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.30 Total: 17.48 kcal Atomic # 16 Polarization: 67.51 SS G_CDS: -0.52 Total: 66.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.02 -7.20 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408007217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.436 kcal (2) G-P(sol) polarization free energy of solvation -34.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds