Wall clock time and date at job start Fri Apr 10 2020 17:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46499 * 119.99758 * 2 1 4 4 S 1.65597 * 119.99977 * 180.02562 * 2 1 3 5 5 O 1.42096 * 106.40432 * 329.88299 * 4 2 1 6 6 O 1.42102 * 106.39903 * 196.96467 * 4 2 1 7 7 N 1.65600 * 107.21815 * 83.42353 * 4 2 1 8 8 C 1.36936 * 120.00302 * 263.17625 * 7 4 2 9 9 H 1.07999 * 120.00081 * 123.40370 * 8 7 4 10 10 C 1.38810 * 119.99902 * 303.40534 * 8 7 4 11 11 N 1.31621 * 120.00062 * 159.90086 * 10 8 7 12 12 Si 1.86802 * 119.99797 * 339.90559 * 10 8 7 13 13 H 1.48498 * 109.47333 * 95.33264 * 12 10 8 14 14 H 1.48506 * 109.46773 * 215.33234 * 12 10 8 15 15 H 1.48494 * 109.47477 * 335.33101 * 12 10 8 16 16 C 1.46509 * 119.99818 * 83.17551 * 7 4 2 17 17 C 1.50694 * 109.46940 * 265.00062 * 16 7 4 18 18 O 1.21287 * 120.00551 * 359.97438 * 17 16 7 19 19 N 1.34772 * 120.00018 * 180.27787 * 17 16 7 20 20 C 1.47023 * 125.64632 * 359.41383 * 19 17 16 21 21 C 1.54316 * 107.27551 * 180.97148 * 20 19 17 22 22 C 1.55156 * 102.86375 * 22.52384 * 21 20 19 23 23 C 1.47428 * 125.65292 * 179.72276 * 19 17 16 24 24 H 1.08994 * 109.46903 * 183.90038 * 1 2 3 25 25 H 1.09001 * 109.47248 * 303.89700 * 1 2 3 26 26 H 1.08997 * 109.46808 * 63.89910 * 1 2 3 27 27 H 1.08995 * 109.47578 * 269.99905 * 3 2 1 28 28 H 1.09002 * 109.47365 * 30.00143 * 3 2 1 29 29 H 1.09004 * 109.46697 * 149.99958 * 3 2 1 30 30 H 0.96997 * 119.99734 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.46515 * 145.00044 * 16 7 4 32 32 H 1.09004 * 109.47114 * 25.00060 * 16 7 4 33 33 H 1.09001 * 109.88188 * 300.51075 * 20 19 17 34 34 H 1.08998 * 109.88308 * 61.67963 * 20 19 17 35 35 H 1.09008 * 110.92271 * 264.10920 * 21 20 19 36 36 H 1.08999 * 110.59372 * 140.78966 * 21 20 19 37 37 H 1.09002 * 111.00101 * 206.22284 * 22 21 20 38 38 H 1.09001 * 111.00266 * 82.38255 * 22 21 20 39 39 H 1.09000 * 110.36666 * 274.67361 * 23 19 17 40 40 H 1.09001 * 110.36086 * 36.88994 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2931 -1.4341 -0.0006 5 8 1.4726 -2.3715 0.6829 6 8 3.6229 -1.1298 0.3973 7 7 2.3813 -1.9485 -1.5722 8 6 1.4762 -2.8603 -2.0461 9 1 0.8746 -2.6244 -2.9115 10 6 1.3319 -4.0878 -1.4142 11 7 0.2352 -4.7939 -1.5906 12 14 2.6941 -4.7374 -0.3133 13 1 2.4007 -4.3833 1.0987 14 1 2.7762 -6.2142 -0.4466 15 1 3.9882 -4.1312 -0.7169 16 6 3.4277 -1.4280 -2.4557 17 6 2.8859 -0.2641 -3.2447 18 8 1.7385 0.0952 -3.0852 19 7 3.6745 0.3740 -4.1320 20 6 5.0791 0.0483 -4.4193 21 6 5.5757 1.0550 -5.4782 22 6 4.5983 2.2476 -5.3061 23 6 3.2735 1.5182 -4.9708 24 1 -0.3633 -1.0252 0.0699 25 1 -0.3634 0.5731 0.8530 26 1 -0.3633 0.4521 -0.9229 27 1 2.3792 1.5835 -1.0276 28 1 1.6085 2.0284 0.5139 29 1 3.1500 1.1384 0.5139 30 1 0.1342 -5.6515 -1.1487 31 1 3.7488 -2.2131 -3.1403 32 1 4.2771 -1.0977 -1.8576 33 1 5.6742 0.1396 -3.5106 34 1 5.1517 -0.9659 -4.8120 35 1 5.4986 0.6348 -6.4811 36 1 6.5997 1.3617 -5.2652 37 1 4.5082 2.8156 -6.2321 38 1 4.9088 2.8916 -4.4833 39 1 2.7913 1.1687 -5.8837 40 1 2.6048 2.1778 -4.4179 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408007217.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:53:09 Heat of formation + Delta-G solvation = -106.466301 kcal Electronic energy + Delta-G solvation = -25441.054001 eV Core-core repulsion = 21803.814209 eV Total energy + Delta-G solvation = -3637.239792 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92046 -38.43973 -38.24141 -37.02288 -36.87429 -36.61099 -34.09138 -32.62791 -30.12643 -28.98556 -28.74507 -25.87308 -25.30207 -24.01884 -21.96202 -21.00581 -20.39066 -19.56080 -18.55237 -17.97239 -17.85166 -17.43988 -17.17019 -16.71805 -16.02112 -15.61786 -15.52635 -15.31019 -14.99763 -14.45403 -14.38107 -14.22493 -14.08905 -13.82124 -13.60499 -13.57002 -13.29260 -13.22661 -13.11560 -13.05037 -12.73443 -12.55042 -12.31692 -12.17039 -12.09674 -12.06218 -11.76632 -11.51466 -11.21106 -10.79948 -9.90805 -9.77112 -9.54441 -8.57274 -6.34994 -0.18399 1.21173 1.26502 1.40104 1.70761 1.89405 2.19568 2.31281 2.65683 2.84376 3.55172 3.57618 3.77055 3.96077 4.02985 4.08128 4.20558 4.40017 4.41881 4.47344 4.52409 4.57023 4.71330 4.75171 4.80807 4.94624 4.95591 4.99416 5.03665 5.08244 5.15907 5.18403 5.37259 5.51114 5.64828 5.85196 6.15957 6.55257 6.96280 7.06835 7.29020 8.52621 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.017212 B = 0.006642 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.392275 B = 4214.378476 C = 4840.041891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -1.011 6.011 3 C 0.092 3.908 4 S 2.696 3.304 5 O -0.999 6.999 6 O -1.023 7.023 7 N -0.842 5.842 8 C -0.289 4.289 9 H 0.062 0.938 10 C 0.067 3.933 11 N -0.872 5.872 12 Si 0.854 3.146 13 H -0.266 1.266 14 H -0.256 1.256 15 H -0.237 1.237 16 C 0.097 3.903 17 C 0.504 3.496 18 O -0.553 6.553 19 N -0.626 5.626 20 C 0.081 3.919 21 C -0.120 4.120 22 C -0.122 4.122 23 C 0.097 3.903 24 H 0.054 0.946 25 H 0.080 0.920 26 H 0.054 0.946 27 H 0.044 0.956 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.282 0.718 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.549 13.877 -7.111 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.850 5.850 3 C -0.053 4.053 4 S 2.715 3.285 5 O -0.982 6.982 6 O -1.007 7.007 7 N -0.671 5.671 8 C -0.429 4.429 9 H 0.080 0.920 10 C -0.144 4.144 11 N -0.509 5.509 12 Si 0.676 3.324 13 H -0.191 1.191 14 H -0.180 1.180 15 H -0.160 1.160 16 C -0.033 4.033 17 C 0.291 3.709 18 O -0.431 6.431 19 N -0.362 5.362 20 C -0.041 4.041 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.025 4.025 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.097 0.903 39 H 0.081 0.919 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.177 13.552 -6.047 18.578 hybrid contribution -0.318 -0.541 0.288 0.690 sum 10.858 13.011 -5.760 17.898 Atomic orbital electron populations 1.21335 0.78533 1.02229 1.01906 1.57736 1.15489 1.21976 1.89807 1.21503 0.96793 0.85540 1.01503 1.06078 0.72734 0.73109 0.76539 1.93483 1.70269 1.61232 1.73252 1.93388 1.38362 1.85386 1.83593 1.52965 1.36684 1.49423 1.28047 1.18229 1.16260 0.92900 1.15544 0.92000 1.26106 0.96854 0.95663 0.95769 1.69823 1.24884 1.14411 1.41743 0.87075 0.82277 0.81130 0.81935 1.19123 1.18041 1.16013 1.21482 0.90598 0.95791 0.95472 1.21306 0.85665 0.84027 0.79920 1.90672 1.18777 1.66651 1.66950 1.48693 1.13813 1.33748 1.39972 1.22432 0.80386 1.00841 1.00424 1.22645 1.00376 0.94167 0.98615 1.22769 0.92441 0.97320 1.03457 1.22349 0.98857 0.87387 0.93937 0.92688 0.90198 0.92692 0.93775 0.88807 0.91149 0.90749 0.85906 0.87114 0.90377 0.90481 0.89484 0.87699 0.87699 0.90335 0.91876 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.16 10.67 127.77 1.36 5.52 16 2 N -1.01 -42.51 3.64 -562.67 -2.05 -44.56 16 3 C 0.09 3.07 10.66 127.77 1.36 4.44 16 4 S 2.70 134.74 4.81 -56.49 -0.27 134.47 16 5 O -1.00 -56.87 11.84 -128.00 -1.52 -58.38 16 6 O -1.02 -50.19 15.36 -128.00 -1.97 -52.16 16 7 N -0.84 -41.55 1.62 -347.17 -0.56 -42.11 16 8 C -0.29 -16.24 9.40 84.03 0.79 -15.45 16 9 H 0.06 3.81 8.06 -2.91 -0.02 3.78 16 10 C 0.07 3.89 4.64 84.86 0.39 4.28 16 11 N -0.87 -52.19 13.97 21.65 0.30 -51.89 16 12 Si 0.85 44.35 25.31 68.60 1.74 46.09 16 13 H -0.27 -14.84 6.31 99.48 0.63 -14.21 16 14 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 15 H -0.24 -11.34 7.11 99.48 0.71 -10.64 16 16 C 0.10 3.81 5.32 85.63 0.46 4.26 16 17 C 0.50 18.96 7.89 87.66 0.69 19.65 16 18 O -0.55 -24.95 16.17 -3.05 -0.05 -25.00 16 19 N -0.63 -17.28 3.33 -811.82 -2.70 -19.98 16 20 C 0.08 1.51 6.48 86.73 0.56 2.07 16 21 C -0.12 -1.38 6.95 31.78 0.22 -1.16 16 22 C -0.12 -1.60 7.08 31.98 0.23 -1.37 16 23 C 0.10 2.19 6.91 86.85 0.60 2.79 16 24 H 0.05 2.49 7.04 -2.39 -0.02 2.47 16 25 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.04 1.47 7.71 -2.39 -0.02 1.46 16 28 H 0.09 2.47 8.07 -2.39 -0.02 2.45 16 29 H 0.07 2.32 7.00 -2.38 -0.02 2.30 16 30 H 0.28 15.79 8.31 -92.71 -0.77 15.02 16 31 H 0.12 4.35 8.08 -2.39 -0.02 4.33 16 32 H 0.11 3.93 7.02 -2.39 -0.02 3.91 16 33 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.06 1.50 8.03 -2.39 -0.02 1.48 16 Total: -1.00 -76.07 335.19 0.54 -75.54 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: 0.95 Total: 12.97 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 6.67 Total: 25.03 kcal Atomic # 7 Polarization: -153.54 SS G_CDS: -5.01 Total: -158.55 kcal Atomic # 8 Polarization: -132.01 SS G_CDS: -3.53 Total: -135.54 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 1.74 Total: 46.09 kcal Atomic # 16 Polarization: 134.74 SS G_CDS: -0.27 Total: 134.47 kcal Total: -76.07 0.54 -75.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408007217.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.931 kcal (2) G-P(sol) polarization free energy of solvation -76.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds