Wall clock time and date at job start Fri Apr 10 2020 17:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46499 * 119.99740 * 274.99310 * 3 2 1 5 5 H 1.09001 * 110.43113 * 179.30152 * 4 3 2 6 6 C 1.54629 * 110.48982 * 301.84802 * 4 3 2 7 7 C 1.54686 * 101.67263 * 143.39603 * 6 4 3 8 8 N 1.46765 * 105.52966 * 334.73811 * 7 6 4 9 9 C 1.34415 * 111.30440 * 16.92670 * 8 7 6 10 10 O 1.21282 * 124.94545 * 179.62981 * 9 8 7 11 11 S 1.65597 * 119.99944 * 95.00236 * 3 2 1 12 12 O 1.42105 * 106.39833 * 203.53552 * 11 3 2 13 13 O 1.42100 * 106.40334 * 336.44970 * 11 3 2 14 14 N 1.65593 * 107.22013 * 89.99653 * 11 3 2 15 15 C 1.46500 * 119.99982 * 269.99549 * 14 11 3 16 16 C 1.46500 * 120.00117 * 90.00139 * 14 11 3 17 17 C 1.50703 * 109.47532 * 94.99795 * 16 14 11 18 18 H 1.08000 * 119.99289 * 359.97438 * 17 16 14 19 19 C 1.37875 * 119.99835 * 179.97438 * 17 16 14 20 20 N 1.31515 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99532 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47110 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46736 * 120.00300 * 21 19 17 24 24 H 1.48500 * 109.46903 * 239.99613 * 21 19 17 25 25 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 28 28 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 29 29 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 30 30 H 1.09003 * 110.96793 * 261.59700 * 6 4 3 31 31 H 1.09002 * 110.96668 * 25.35111 * 6 4 3 32 32 H 1.08999 * 110.29502 * 215.68331 * 7 6 4 33 33 H 1.08992 * 110.21492 * 93.75542 * 7 6 4 34 34 H 0.97002 * 124.34661 * 196.94297 * 8 7 6 35 35 H 1.08996 * 109.47221 * 90.00009 * 15 14 11 36 36 H 1.09000 * 109.47572 * 210.00152 * 15 14 11 37 37 H 1.09004 * 109.47168 * 330.00178 * 15 14 11 38 38 H 1.09010 * 109.46912 * 214.99890 * 16 14 11 39 39 H 1.09002 * 109.47160 * 334.99528 * 16 14 11 40 40 H 0.96998 * 120.00099 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1584 2.1086 -1.2639 5 1 2.5197 3.1208 -1.0824 6 6 3.1138 1.3558 -2.2187 7 6 2.4498 1.6122 -3.5921 8 7 1.0315 1.8554 -3.3036 9 6 0.8396 2.1421 -2.0044 10 8 -0.2346 2.3907 -1.4992 11 16 2.4122 2.1202 1.4287 12 8 2.3057 3.5187 1.1997 13 8 1.6868 1.4416 2.4448 14 7 4.0144 1.8137 1.7137 15 6 4.4089 0.6239 2.4718 16 6 5.0372 2.7325 1.2079 17 6 5.4044 3.7187 2.2866 18 1 4.9235 3.6666 3.2523 19 6 6.3542 4.6875 2.0407 20 7 6.9400 4.7506 0.8650 21 14 6.8087 5.9104 3.3777 22 1 6.0128 5.6273 4.5989 23 1 8.2552 5.7868 3.6904 24 1 6.5202 7.2888 2.9065 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 4.1166 1.7814 -2.1824 31 1 3.1352 0.2905 -1.9889 32 1 2.5595 0.7382 -4.2341 33 1 2.8934 2.4869 -4.0675 34 1 0.3235 1.8143 -3.9654 35 1 4.5591 -0.2103 1.7866 36 1 5.3366 0.8254 3.0076 37 1 3.6247 0.3712 3.1855 38 1 5.9221 2.1664 0.9167 39 1 4.6479 3.2688 0.3425 40 1 7.6079 5.4324 0.6918 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000443084000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:49 Heat of formation + Delta-G solvation = -125.689932 kcal Electronic energy + Delta-G solvation = -25178.495440 eV Core-core repulsion = 21540.422050 eV Total energy + Delta-G solvation = -3638.073391 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.56775 -38.41565 -37.71146 -37.20448 -36.94075 -36.77920 -34.49107 -32.25636 -30.29950 -29.64147 -27.74846 -26.76004 -24.22009 -24.18135 -22.62636 -21.58626 -19.93925 -19.21573 -18.47564 -18.39093 -18.34991 -17.42520 -16.88439 -16.70487 -16.18889 -15.45842 -15.18158 -15.05765 -14.88333 -14.81815 -14.36220 -14.20502 -14.09982 -13.86972 -13.78052 -13.45119 -13.34488 -13.10812 -13.03120 -12.94554 -12.68250 -12.56267 -12.47945 -12.39154 -12.10903 -11.92109 -11.77401 -11.69292 -11.26021 -10.58268 -10.06989 -9.99946 -9.76128 -8.20134 -6.30371 -0.46451 1.37836 1.41206 1.42468 1.52016 2.00328 2.35269 2.41004 2.55282 3.11102 3.30082 3.32643 3.52535 3.86816 3.99763 4.05051 4.12633 4.30065 4.33258 4.50032 4.67180 4.75586 4.77231 4.82933 4.86475 5.06398 5.07900 5.11038 5.20450 5.25625 5.34691 5.45391 5.55844 5.71581 5.83152 5.95930 6.02268 6.12950 6.76889 7.22580 7.38072 8.87187 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.018504 B = 0.005534 C = 0.004910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.812951 B = 5058.062806 C = 5701.367251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.113 3.887 3 N -0.984 5.984 4 C 0.103 3.897 5 H 0.108 0.892 6 C -0.139 4.139 7 C 0.104 3.896 8 N -0.712 5.712 9 C 0.511 3.489 10 O -0.563 6.563 11 S 2.788 3.212 12 O -1.010 7.010 13 O -1.005 7.005 14 N -0.999 5.999 15 C 0.087 3.913 16 C 0.274 3.726 17 C -0.552 4.552 18 H 0.045 0.955 19 C 0.018 3.982 20 N -0.918 5.918 21 Si 0.949 3.051 22 H -0.275 1.275 23 H -0.267 1.267 24 H -0.280 1.280 25 H 0.063 0.937 26 H 0.088 0.912 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.422 0.578 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.037 0.963 39 H 0.020 0.980 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 -13.817 -11.803 18.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.011 4.011 3 N -0.823 5.823 4 C -0.007 4.007 5 H 0.125 0.875 6 C -0.178 4.178 7 C -0.019 4.019 8 N -0.368 5.368 9 C 0.294 3.706 10 O -0.442 6.442 11 S 2.799 3.201 12 O -0.994 6.994 13 O -0.988 6.988 14 N -0.841 5.841 15 C -0.058 4.058 16 C 0.150 3.850 17 C -0.591 4.591 18 H 0.063 0.937 19 C -0.182 4.182 20 N -0.558 5.558 21 Si 0.775 3.225 22 H -0.200 1.200 23 H -0.192 1.192 24 H -0.206 1.206 25 H 0.082 0.918 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.109 0.891 29 H 0.133 0.867 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.263 0.737 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.038 0.962 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.094 -13.112 -10.987 18.160 hybrid contribution 0.098 1.062 0.457 1.161 sum -5.997 -12.050 -10.529 17.089 Atomic orbital electron populations 1.22432 0.96460 1.02913 1.02241 1.21545 0.94343 0.80023 1.05151 1.57777 1.79697 1.24392 1.20476 1.21688 0.95408 0.98504 0.85111 0.87460 1.23174 0.99157 1.03061 0.92385 1.22389 0.78301 1.04432 0.96825 1.46065 1.11660 1.70187 1.08892 1.21071 0.90074 0.75182 0.84234 1.90696 1.30698 1.50056 1.72711 1.01543 0.73024 0.72343 0.73232 1.93545 1.86744 1.33153 1.85919 1.93486 1.71853 1.76385 1.57123 1.57547 1.24044 1.34851 1.67662 1.21610 1.02102 0.85866 0.96198 1.18650 0.86470 0.86686 0.93164 1.21866 1.22122 1.15280 0.99849 0.93654 1.25621 0.95913 0.98877 0.97810 1.69969 1.27654 1.35495 1.22646 0.85643 0.78421 0.78983 0.79487 1.19970 1.19195 1.20568 0.91789 0.89295 0.95229 0.89125 0.86670 0.87732 0.86862 0.85906 0.89265 0.73735 0.90128 0.90949 0.91226 0.94488 0.96202 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.86 9.68 71.98 0.70 -4.16 16 2 C 0.11 2.70 5.67 86.38 0.49 3.19 16 3 N -0.98 -30.98 2.88 -493.41 -1.42 -32.40 16 4 C 0.10 2.97 3.33 44.99 0.15 3.12 16 5 H 0.11 3.75 6.98 -2.39 -0.02 3.74 16 6 C -0.14 -2.35 6.74 31.72 0.21 -2.14 16 7 C 0.10 1.16 7.79 86.90 0.68 1.83 16 8 N -0.71 -12.17 6.24 -459.46 -2.87 -15.03 16 9 C 0.51 14.51 6.49 87.90 0.57 15.08 16 10 O -0.56 -21.09 15.62 -3.04 -0.05 -21.14 16 11 S 2.79 117.42 6.01 -56.49 -0.34 117.08 16 12 O -1.01 -52.39 15.70 -128.00 -2.01 -54.40 16 13 O -1.00 -44.08 15.71 -128.00 -2.01 -46.09 16 14 N -1.00 -40.72 3.23 -543.21 -1.75 -42.47 16 15 C 0.09 2.81 10.68 127.77 1.36 4.17 16 16 C 0.27 13.34 5.08 85.63 0.43 13.78 16 17 C -0.55 -31.07 9.38 25.60 0.24 -30.83 16 18 H 0.05 2.62 7.81 -2.91 -0.02 2.60 16 19 C 0.02 0.99 5.46 84.65 0.46 1.46 16 20 N -0.92 -52.02 13.29 21.45 0.28 -51.73 16 21 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 25 H 0.06 1.86 4.59 -2.39 -0.01 1.85 16 26 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.09 2.02 7.61 -2.39 -0.02 2.00 16 29 H 0.12 1.79 6.30 -2.39 -0.02 1.77 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 1.43 6.22 -2.39 -0.01 1.42 16 32 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.42 5.41 8.96 -92.71 -0.83 4.58 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 37 H 0.07 2.17 7.02 -2.39 -0.02 2.16 16 38 H 0.04 1.78 8.11 -2.38 -0.02 1.76 16 39 H 0.02 1.03 7.61 -2.39 -0.02 1.01 16 40 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -80.57 336.26 -2.60 -83.17 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.23 Total: 10.97 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.30 Total: 5.51 kcal Atomic # 7 Polarization: -135.88 SS G_CDS: -5.75 Total: -141.63 kcal Atomic # 8 Polarization: -117.56 SS G_CDS: -4.07 Total: -121.62 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 117.42 SS G_CDS: -0.34 Total: 117.08 kcal Total: -80.57 -2.60 -83.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000443084000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.518 kcal (2) G-P(sol) polarization free energy of solvation -80.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds