Wall clock time and date at job start Fri Apr 10 2020 17:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46763 * 124.34806 * 90.00467 * 3 2 1 5 5 C 1.54482 * 105.47085 * 197.01692 * 4 3 2 6 6 H 1.08995 * 110.97376 * 92.70400 * 5 4 3 7 7 N 1.46501 * 110.96404 * 216.46414 * 5 4 3 8 8 S 1.65602 * 119.99692 * 214.99823 * 7 5 4 9 9 O 1.42104 * 106.40226 * 178.54014 * 8 7 5 10 10 O 1.42103 * 106.40377 * 311.45826 * 8 7 5 11 11 N 1.65598 * 107.21755 * 65.00123 * 8 7 5 12 12 C 1.46500 * 120.00282 * 90.00422 * 11 8 7 13 13 C 1.46503 * 119.99784 * 269.99735 * 11 8 7 14 14 C 1.50697 * 109.46920 * 95.00229 * 13 11 8 15 15 H 1.08001 * 120.00018 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00111 * 179.97438 * 14 13 11 17 17 N 1.31523 * 119.99601 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00243 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47097 * 90.00344 * 18 16 14 20 20 H 1.48499 * 109.47280 * 210.00090 * 18 16 14 21 21 H 1.48496 * 109.47139 * 330.00316 * 18 16 14 22 22 C 1.54627 * 101.76258 * 334.57759 * 5 4 3 23 23 C 1.34415 * 124.35240 * 269.70019 * 3 2 1 24 24 O 1.21288 * 124.94000 * 359.57121 * 23 3 2 25 25 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 26 26 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 28 28 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 29 29 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 30 30 H 1.08999 * 110.24140 * 316.01119 * 4 3 2 31 31 H 1.08993 * 110.25038 * 77.92305 * 4 3 2 32 32 H 0.96998 * 120.00241 * 34.99502 * 7 5 4 33 33 H 1.08992 * 109.47636 * 89.99419 * 12 11 8 34 34 H 1.09001 * 109.47148 * 210.00086 * 12 11 8 35 35 H 1.09007 * 109.46667 * 329.99352 * 12 11 8 36 36 H 1.09008 * 109.47140 * 215.00089 * 13 11 8 37 37 H 1.08997 * 109.47044 * 335.00234 * 13 11 8 38 38 H 0.97001 * 119.99508 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.47953 * 143.47864 * 22 5 4 40 40 H 1.08998 * 110.48875 * 265.99028 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 2.3529 3.6346 0.7487 6 1 1.3781 4.1128 0.8448 7 7 3.3744 4.3773 1.4911 8 16 3.1260 5.9692 1.8741 9 8 4.2662 6.3869 2.6122 10 8 2.6974 6.6073 0.6790 11 7 1.8442 6.0273 2.9210 12 6 2.0736 5.9412 4.3653 13 6 0.4809 6.1649 2.4027 14 6 -0.1480 4.8013 2.2752 15 1 0.4117 3.9204 2.5529 16 6 -1.4384 4.6785 1.8051 17 7 -2.1201 5.7514 1.4673 18 14 -2.2177 2.9883 1.6464 19 1 -2.9109 2.6419 2.9132 20 1 -3.1991 2.9984 0.5320 21 1 -1.1628 1.9810 1.3679 22 6 2.7504 3.4822 -0.7378 23 6 2.2766 2.0945 -1.1097 24 8 2.1463 1.6857 -2.2441 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.4933 2.0265 1.9383 31 1 3.2493 1.8628 1.6438 32 1 4.1961 3.9367 1.7583 33 1 2.2157 6.9427 4.7711 34 1 1.2120 5.4745 4.8429 35 1 2.9638 5.3419 4.5567 36 1 -0.1085 6.7743 3.0879 37 1 0.5108 6.6441 1.4241 38 1 -3.0280 5.6649 1.1369 39 1 2.2491 4.2352 -1.3458 40 1 3.8316 3.5579 -0.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451861305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:53 Heat of formation + Delta-G solvation = -106.331106 kcal Electronic energy + Delta-G solvation = -25147.367142 eV Core-core repulsion = 21510.133213 eV Total energy + Delta-G solvation = -3637.233929 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.26307 -36.84977 -36.53141 -35.60596 -35.29139 -34.87078 -32.63996 -31.86893 -28.71932 -27.96132 -27.00708 -25.18571 -23.29489 -22.45580 -21.58896 -19.43464 -18.94113 -17.54051 -16.92132 -16.68448 -16.45542 -16.19660 -15.61568 -15.23229 -14.72799 -14.06896 -13.92940 -13.70899 -13.57258 -13.47421 -13.26124 -13.11158 -12.45668 -12.36624 -12.25400 -12.09079 -11.87580 -11.74565 -11.57963 -11.42229 -11.39076 -11.26732 -11.05805 -10.92059 -10.58791 -10.53579 -10.08167 -9.87682 -9.84153 -9.14540 -8.63383 -8.61162 -8.16898 -6.26111 -4.35120 1.17396 2.77880 3.08378 3.14165 3.18422 3.25399 3.43337 4.05182 4.21869 4.57364 4.70523 4.88051 5.03006 5.09230 5.20079 5.21865 5.33204 5.43102 5.48529 5.59553 5.70128 5.73086 5.79224 5.96120 6.00896 6.14300 6.20626 6.33844 6.43241 6.53716 6.66903 7.12564 7.23087 7.26079 7.33203 7.52992 7.69839 7.98466 8.34505 8.69258 9.31172 10.80545 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.008210 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.427503 B = 3409.464239 C = 4926.008406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.125 3.875 3 N -0.617 5.617 4 C 0.100 3.900 5 C 0.130 3.870 6 H 0.156 0.844 7 N -1.117 6.117 8 S 2.787 3.213 9 O -0.999 6.999 10 O -0.973 6.973 11 N -0.997 5.997 12 C 0.107 3.893 13 C 0.239 3.761 14 C -0.552 4.552 15 H 0.067 0.933 16 C 0.070 3.930 17 N -0.880 5.880 18 Si 0.879 3.121 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.253 1.253 22 C -0.172 4.172 23 C 0.524 3.476 24 O -0.539 6.539 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.071 0.929 32 H 0.407 0.593 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.040 0.960 37 H 0.053 0.947 38 H 0.267 0.733 39 H 0.113 0.887 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 -8.073 3.332 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.004 3.996 3 N -0.352 5.352 4 C -0.025 4.025 5 C 0.021 3.979 6 H 0.173 0.827 7 N -0.873 5.873 8 S 2.794 3.206 9 O -0.983 6.983 10 O -0.957 6.957 11 N -0.839 5.839 12 C -0.040 4.040 13 C 0.117 3.883 14 C -0.591 4.591 15 H 0.085 0.915 16 C -0.135 4.135 17 N -0.516 5.516 18 Si 0.706 3.294 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.178 1.178 22 C -0.214 4.214 23 C 0.312 3.688 24 O -0.416 6.416 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.240 0.760 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.131 0.869 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.931 -7.431 2.292 11.107 hybrid contribution -0.554 -1.521 0.351 1.657 sum 7.377 -8.952 2.643 11.897 Atomic orbital electron populations 1.22438 0.95782 1.02074 1.03804 1.21288 0.94562 0.81201 1.02595 1.48311 1.65705 1.13884 1.07285 1.22389 1.01923 0.90518 0.87652 1.22182 0.94652 0.92365 0.88664 0.82703 1.56101 1.27376 1.32905 1.70956 1.01797 0.72418 0.72944 0.73464 1.93559 1.50839 1.80624 1.73285 1.93600 1.82396 1.73152 1.46505 1.57602 1.22775 1.87857 1.15699 1.21220 1.01210 1.00550 0.80998 1.19289 0.75517 0.97471 0.95991 1.21549 0.99184 0.93107 1.45279 0.91467 1.24974 0.96990 0.96805 0.94740 1.69925 1.11232 1.28368 1.42113 0.86864 0.80024 0.84610 0.77858 1.20709 1.21125 1.17817 1.22906 1.03865 0.95664 0.98921 1.20899 0.76043 0.87622 0.84239 1.90683 1.54068 1.75624 1.21205 0.92170 0.91807 0.90966 0.90278 0.90585 0.89182 0.91052 0.76029 0.93718 0.90752 0.92808 0.94238 0.92882 0.92336 0.86914 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 10.24 37.16 0.38 -2.06 16 2 C 0.13 1.56 6.66 -4.04 -0.03 1.53 16 3 N -0.62 -8.94 2.93 -172.41 -0.51 -9.45 16 4 C 0.10 1.31 7.08 -3.12 -0.02 1.29 16 5 C 0.13 2.00 3.32 -66.30 -0.22 1.78 16 6 H 0.16 2.91 4.60 -51.93 -0.24 2.67 16 7 N -1.12 -15.75 5.62 -3.50 -0.02 -15.77 16 8 S 2.79 49.87 6.03 -107.50 -0.65 49.22 16 9 O -1.00 -18.80 17.21 -57.17 -0.98 -19.78 16 10 O -0.97 -20.82 16.45 -57.17 -0.94 -21.76 16 11 N -1.00 -18.51 3.23 -123.05 -0.40 -18.90 16 12 C 0.11 1.64 10.31 59.85 0.62 2.26 16 13 C 0.24 5.40 5.30 -5.19 -0.03 5.37 16 14 C -0.55 -12.68 6.94 -34.44 -0.24 -12.92 16 15 H 0.07 1.42 6.48 -52.49 -0.34 1.08 16 16 C 0.07 1.73 5.46 -17.81 -0.10 1.63 16 17 N -0.88 -23.55 13.29 55.43 0.74 -22.81 16 18 Si 0.88 18.62 29.54 -169.99 -5.02 13.60 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.25 -4.83 4.61 56.52 0.26 -4.57 16 22 C -0.17 -2.65 6.59 -26.74 -0.18 -2.83 16 23 C 0.52 8.85 8.02 -10.86 -0.09 8.76 16 24 O -0.54 -10.76 17.59 5.55 0.10 -10.66 16 25 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.06 5.65 -51.93 -0.29 0.77 16 28 H 0.08 0.98 7.92 -51.93 -0.41 0.57 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.21 7.64 -51.93 -0.40 0.82 16 31 H 0.07 0.74 7.89 -51.93 -0.41 0.33 16 32 H 0.41 4.40 8.70 -34.47 -0.30 4.10 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 35 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 36 H 0.04 0.94 8.11 -51.92 -0.42 0.52 16 37 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.52 16 39 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 40 H 0.10 1.39 8.08 -51.93 -0.42 0.97 16 LS Contribution 337.45 15.07 5.09 5.09 Total: -1.00 -31.23 337.45 -8.30 -39.52 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -5.80 Total: 6.90 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 0.10 Total: 4.80 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -0.19 Total: -66.93 kcal Atomic # 8 Polarization: -50.38 SS G_CDS: -1.83 Total: -52.21 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Atomic # 16 Polarization: 49.87 SS G_CDS: -0.65 Total: 49.22 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.23 -8.30 -39.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451861305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.809 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds