Wall clock time and date at job start Fri Apr 10 2020 17:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.46992 * 2 1 4 4 C 1.46763 * 124.34806 * 90.00467 * 3 2 1 5 5 C 1.54482 * 105.47085 * 197.01692 * 4 3 2 6 6 H 1.08995 * 110.97376 * 92.70400 * 5 4 3 7 7 N 1.46501 * 110.96404 * 216.46414 * 5 4 3 8 8 S 1.65602 * 119.99692 * 214.99823 * 7 5 4 9 9 O 1.42104 * 106.40226 * 178.54014 * 8 7 5 10 10 O 1.42103 * 106.40377 * 311.45826 * 8 7 5 11 11 N 1.65598 * 107.21755 * 65.00123 * 8 7 5 12 12 C 1.46500 * 120.00282 * 90.00422 * 11 8 7 13 13 C 1.46503 * 119.99784 * 269.99735 * 11 8 7 14 14 C 1.50697 * 109.46920 * 95.00229 * 13 11 8 15 15 H 1.08001 * 120.00018 * 0.02562 * 14 13 11 16 16 C 1.37881 * 120.00111 * 179.97438 * 14 13 11 17 17 N 1.31523 * 119.99601 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00243 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47097 * 90.00344 * 18 16 14 20 20 H 1.48499 * 109.47280 * 210.00090 * 18 16 14 21 21 H 1.48496 * 109.47139 * 330.00316 * 18 16 14 22 22 C 1.54627 * 101.76258 * 334.57759 * 5 4 3 23 23 C 1.34415 * 124.35240 * 269.70019 * 3 2 1 24 24 O 1.21288 * 124.94000 * 359.57121 * 23 3 2 25 25 H 1.09008 * 109.47142 * 59.99450 * 1 2 3 26 26 H 1.08992 * 109.47123 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00285 * 1 2 3 28 28 H 1.09000 * 109.46884 * 240.00615 * 2 1 3 29 29 H 1.09000 * 109.46955 * 119.99931 * 2 1 3 30 30 H 1.08999 * 110.24140 * 316.01119 * 4 3 2 31 31 H 1.08993 * 110.25038 * 77.92305 * 4 3 2 32 32 H 0.96998 * 120.00241 * 34.99502 * 7 5 4 33 33 H 1.08992 * 109.47636 * 89.99419 * 12 11 8 34 34 H 1.09001 * 109.47148 * 210.00086 * 12 11 8 35 35 H 1.09007 * 109.46667 * 329.99352 * 12 11 8 36 36 H 1.09008 * 109.47140 * 215.00089 * 13 11 8 37 37 H 1.08997 * 109.47044 * 335.00234 * 13 11 8 38 38 H 0.97001 * 119.99508 * 180.02562 * 17 16 14 39 39 H 1.09000 * 110.47953 * 143.47864 * 22 5 4 40 40 H 1.08998 * 110.48875 * 265.99028 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1620 1.2117 5 6 2.3529 3.6346 0.7487 6 1 1.3781 4.1128 0.8448 7 7 3.3744 4.3773 1.4911 8 16 3.1260 5.9692 1.8741 9 8 4.2662 6.3869 2.6122 10 8 2.6974 6.6073 0.6790 11 7 1.8442 6.0273 2.9210 12 6 2.0736 5.9412 4.3653 13 6 0.4809 6.1649 2.4027 14 6 -0.1480 4.8013 2.2752 15 1 0.4117 3.9204 2.5529 16 6 -1.4384 4.6785 1.8051 17 7 -2.1201 5.7514 1.4673 18 14 -2.2177 2.9883 1.6464 19 1 -2.9109 2.6419 2.9132 20 1 -3.1991 2.9984 0.5320 21 1 -1.1628 1.9810 1.3679 22 6 2.7504 3.4822 -0.7378 23 6 2.2766 2.0945 -1.1097 24 8 2.1463 1.6857 -2.2441 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8900 30 1 1.4933 2.0265 1.9383 31 1 3.2493 1.8628 1.6438 32 1 4.1961 3.9367 1.7583 33 1 2.2157 6.9427 4.7711 34 1 1.2120 5.4745 4.8429 35 1 2.9638 5.3419 4.5567 36 1 -0.1085 6.7743 3.0879 37 1 0.5108 6.6441 1.4241 38 1 -3.0280 5.6649 1.1369 39 1 2.2491 4.2352 -1.3458 40 1 3.8316 3.5579 -0.8532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451861305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:53 Heat of formation + Delta-G solvation = -130.954635 kcal Electronic energy + Delta-G solvation = -25148.434898 eV Core-core repulsion = 21510.133213 eV Total energy + Delta-G solvation = -3638.301685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.48723 -38.33456 -37.91119 -37.16563 -36.84840 -36.04206 -34.44778 -33.01910 -29.90176 -29.62973 -28.18160 -26.70911 -24.36449 -24.17681 -22.80741 -20.72110 -20.26825 -19.02588 -18.43910 -18.25406 -17.79844 -17.48449 -16.93397 -16.67841 -16.29072 -15.44849 -15.13685 -15.03469 -14.97590 -14.75159 -14.64407 -14.26414 -13.98086 -13.89833 -13.48181 -13.33324 -13.25905 -13.12501 -13.03333 -13.00163 -12.82867 -12.69343 -12.43542 -12.34914 -12.16699 -11.97088 -11.62993 -11.52316 -11.14630 -10.52887 -10.42241 -9.75418 -9.72873 -8.14353 -6.27447 -0.27968 1.45252 1.46789 1.49213 1.55623 1.89907 2.13028 2.44559 2.64718 3.17085 3.36841 3.47307 3.53600 3.90867 4.09544 4.12916 4.17877 4.25979 4.44567 4.49457 4.58273 4.65830 4.79533 4.81084 4.86870 4.92179 4.96220 5.15251 5.22285 5.28525 5.37304 5.53830 5.58998 5.77969 5.89683 6.05510 6.12386 6.25362 6.84995 7.09568 7.42252 8.92616 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.011789 B = 0.008210 C = 0.005683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.427503 B = 3409.464239 C = 4926.008406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.120 3.880 3 N -0.613 5.613 4 C 0.103 3.897 5 C 0.129 3.871 6 H 0.122 0.878 7 N -1.095 6.095 8 S 2.803 3.197 9 O -1.004 7.004 10 O -1.013 7.013 11 N -1.001 6.001 12 C 0.098 3.902 13 C 0.252 3.748 14 C -0.536 4.536 15 H 0.091 0.909 16 C 0.016 3.984 17 N -0.927 5.927 18 Si 0.931 3.069 19 H -0.279 1.279 20 H -0.307 1.307 21 H -0.219 1.219 22 C -0.171 4.171 23 C 0.517 3.483 24 O -0.579 6.579 25 H 0.029 0.971 26 H 0.091 0.909 27 H 0.061 0.939 28 H 0.077 0.923 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.428 0.572 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.019 0.981 37 H 0.019 0.981 38 H 0.262 0.738 39 H 0.092 0.908 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.757 -10.826 5.131 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.001 4.001 3 N -0.346 5.346 4 C -0.021 4.021 5 C 0.020 3.980 6 H 0.140 0.860 7 N -0.857 5.857 8 S 2.810 3.190 9 O -0.988 6.988 10 O -0.996 6.996 11 N -0.843 5.843 12 C -0.048 4.048 13 C 0.128 3.872 14 C -0.574 4.574 15 H 0.109 0.891 16 C -0.185 4.185 17 N -0.567 5.567 18 Si 0.757 3.243 19 H -0.205 1.205 20 H -0.234 1.234 21 H -0.142 1.142 22 C -0.213 4.213 23 C 0.306 3.694 24 O -0.459 6.459 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.080 0.920 28 H 0.096 0.904 29 H 0.134 0.866 30 H 0.114 0.886 31 H 0.132 0.868 32 H 0.265 0.735 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.850 -10.208 4.163 14.784 hybrid contribution -1.064 -0.631 -0.178 1.250 sum 8.786 -10.839 3.985 14.511 Atomic orbital electron populations 1.22425 0.96555 1.03341 1.01641 1.21537 0.93865 0.80176 1.04481 1.48455 1.64546 1.14653 1.06926 1.22516 1.04387 0.88215 0.86946 1.21957 0.93247 0.93903 0.88910 0.86015 1.55568 1.28124 1.31565 1.70401 1.01120 0.71824 0.73448 0.72582 1.93549 1.50714 1.81235 1.73287 1.93559 1.82960 1.74741 1.48388 1.57482 1.21028 1.88374 1.17390 1.21479 1.02664 1.01753 0.78885 1.18861 0.77368 0.96998 0.93990 1.21882 0.98710 0.93844 1.43005 0.89101 1.25772 0.97963 0.99773 0.94953 1.70075 1.11446 1.30667 1.44480 0.86038 0.79584 0.81763 0.76905 1.20466 1.23396 1.14155 1.22893 1.05167 0.94645 0.98622 1.21065 0.75942 0.88151 0.84265 1.90658 1.56021 1.76422 1.22817 0.95136 0.89011 0.91981 0.90441 0.86645 0.88636 0.86817 0.73499 0.93048 0.90460 0.89856 0.96260 0.96260 0.92944 0.88981 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.31 10.24 71.98 0.74 -3.57 16 2 C 0.12 2.53 6.66 86.38 0.58 3.11 16 3 N -0.61 -15.79 2.93 -817.98 -2.40 -18.19 16 4 C 0.10 2.26 7.08 86.83 0.61 2.87 16 5 C 0.13 3.67 3.32 46.05 0.15 3.82 16 6 H 0.12 4.44 4.60 -2.39 -0.01 4.43 16 7 N -1.10 -27.65 5.62 -165.00 -0.93 -28.58 16 8 S 2.80 96.48 6.03 -56.49 -0.34 96.14 16 9 O -1.00 -35.42 17.21 -128.00 -2.20 -37.62 16 10 O -1.01 -43.83 16.45 -128.00 -2.11 -45.94 16 11 N -1.00 -36.10 3.23 -543.22 -1.75 -37.86 16 12 C 0.10 2.77 10.31 127.77 1.32 4.09 16 13 C 0.25 11.53 5.30 85.63 0.45 11.98 16 14 C -0.54 -24.32 6.94 25.60 0.18 -24.14 16 15 H 0.09 3.60 6.48 -2.91 -0.02 3.58 16 16 C 0.02 0.77 5.46 84.65 0.46 1.23 16 17 N -0.93 -51.44 13.29 21.45 0.28 -51.15 16 18 Si 0.93 37.93 29.54 68.60 2.03 39.96 16 19 H -0.28 -11.22 7.11 99.48 0.71 -10.51 16 20 H -0.31 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.22 -7.54 4.61 99.48 0.46 -7.09 16 22 C -0.17 -5.09 6.59 30.59 0.20 -4.89 16 23 C 0.52 16.75 8.02 87.90 0.71 17.46 16 24 O -0.58 -22.99 17.59 -3.05 -0.05 -23.04 16 25 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.06 1.58 5.65 -2.39 -0.01 1.57 16 28 H 0.08 1.70 7.92 -2.39 -0.02 1.68 16 29 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 2.08 7.64 -2.39 -0.02 2.06 16 31 H 0.11 1.62 7.89 -2.39 -0.02 1.60 16 32 H 0.43 7.34 8.70 -96.75 -0.84 6.50 16 33 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 2.15 8.07 -2.39 -0.02 2.13 16 35 H 0.08 1.88 7.79 -2.38 -0.02 1.86 16 36 H 0.02 0.95 8.11 -2.38 -0.02 0.93 16 37 H 0.02 1.02 6.91 -2.39 -0.02 1.00 16 38 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 39 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.13 3.13 8.08 -2.39 -0.02 3.11 16 Total: -1.00 -70.41 337.45 -2.10 -72.51 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.03 Total: 21.80 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.40 Total: 11.95 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -4.79 Total: -135.78 kcal Atomic # 8 Polarization: -102.24 SS G_CDS: -4.36 Total: -106.60 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Atomic # 16 Polarization: 96.48 SS G_CDS: -0.34 Total: 96.14 kcal Total: -70.41 -2.10 -72.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451861305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.442 kcal (2) G-P(sol) polarization free energy of solvation -70.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds