Wall clock time and date at job start Fri Apr 10 2020 17:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00129 * 2 1 4 4 O 1.21586 * 119.99923 * 180.02562 * 3 2 1 5 5 N 1.34779 * 120.00123 * 0.02562 * 3 2 1 6 6 C 1.46498 * 120.00250 * 180.02562 * 5 3 2 7 7 C 1.50695 * 109.47302 * 179.97438 * 6 5 3 8 8 H 1.08001 * 119.99977 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00152 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99968 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00176 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47277 * 90.00066 * 11 9 7 13 13 H 1.48499 * 109.47312 * 210.00427 * 11 9 7 14 14 H 1.48503 * 109.47080 * 330.00014 * 11 9 7 15 15 C 1.46499 * 119.99692 * 180.27749 * 2 1 3 16 16 H 1.09000 * 110.88475 * 190.51856 * 15 2 1 17 17 C 1.55165 * 111.00415 * 66.64169 * 15 2 1 18 18 C 1.54320 * 102.94192 * 277.42496 * 17 15 2 19 19 N 1.47023 * 107.27404 * 337.80805 * 18 17 15 20 20 S 1.65590 * 125.65011 * 178.98541 * 19 18 17 21 21 C 1.81401 * 104.45153 * 89.97518 * 20 19 18 22 22 O 1.42099 * 104.27946 * 206.04548 * 20 19 18 23 23 O 1.42101 * 104.28064 * 333.90377 * 20 19 18 24 24 C 1.47431 * 108.69965 * 358.94107 * 19 18 17 25 25 H 1.09006 * 109.46896 * 275.00715 * 1 2 3 26 26 H 1.09000 * 109.47283 * 35.00562 * 1 2 3 27 27 H 1.09000 * 109.47675 * 155.00850 * 1 2 3 28 28 H 0.97005 * 119.99981 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.46878 * 299.99897 * 6 5 3 30 30 H 1.09001 * 109.47241 * 59.99666 * 6 5 3 31 31 H 0.97005 * 119.99968 * 179.97438 * 10 9 7 32 32 H 1.09002 * 110.71768 * 35.78915 * 17 15 2 33 33 H 1.08999 * 110.72008 * 159.06092 * 17 15 2 34 34 H 1.09000 * 109.88110 * 97.22535 * 18 17 15 35 35 H 1.08998 * 109.88199 * 218.23246 * 18 17 15 36 36 H 1.08997 * 109.46955 * 59.99867 * 21 20 19 37 37 H 1.08998 * 109.47465 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.47095 * 300.00100 * 21 20 19 39 39 H 1.09000 * 110.36499 * 265.28934 * 24 19 18 40 40 H 1.09004 * 110.36797 * 142.96808 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3547 1.1671 -0.0005 5 7 1.4650 2.3344 0.0005 6 6 2.1975 3.6031 0.0000 7 6 1.2183 4.7485 0.0001 8 1 0.1565 4.5512 0.0010 9 6 1.6779 6.0484 0.0001 10 7 2.9709 6.2887 -0.0004 11 14 0.4641 7.4683 0.0010 12 1 0.1431 7.8443 1.4012 13 1 1.0636 8.6326 -0.6991 14 1 -0.7796 7.0568 -0.6985 15 6 2.1974 -1.2687 -0.0061 16 1 3.2588 -1.1056 0.1806 17 6 1.9781 -2.0311 -1.3397 18 6 0.6288 -2.7446 -1.1120 19 7 0.4301 -2.8495 0.3410 20 16 -0.8867 -3.5189 1.0892 21 6 -0.4531 -5.2690 1.2885 22 8 -0.9388 -2.8710 2.3528 23 8 -1.9390 -3.3702 0.1458 24 6 1.5981 -2.2609 1.0214 25 1 -0.3633 0.0897 1.0238 26 1 -0.3634 0.8417 -0.5895 27 1 -0.3634 -0.9314 -0.4342 28 1 0.4950 2.3344 0.0005 29 1 2.8248 3.6608 0.8895 30 1 2.8235 3.6608 -0.8905 31 1 3.2942 7.2033 -0.0007 32 1 1.9098 -1.3346 -2.1753 33 1 2.7748 -2.7563 -1.5048 34 1 -0.1783 -2.1615 -1.5554 35 1 0.6555 -3.7390 -1.5576 36 1 0.4472 -5.3532 1.8972 37 1 -1.2733 -5.7930 1.7793 38 1 -0.2724 -5.7124 0.3093 39 1 2.3237 -3.0359 1.2682 40 1 1.2858 -1.7319 1.9219 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490388246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:51:59 Heat of formation + Delta-G solvation = -105.688610 kcal Electronic energy + Delta-G solvation = -23955.043647 eV Core-core repulsion = 20317.837578 eV Total energy + Delta-G solvation = -3637.206068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.44228 -39.43732 -38.16418 -36.99049 -36.16718 -35.60638 -34.23512 -31.50575 -30.24888 -30.07125 -29.09916 -27.40299 -24.87423 -23.34216 -22.38720 -20.75018 -19.92838 -19.56987 -18.73988 -18.16346 -17.72883 -17.27448 -16.83839 -16.70988 -16.54109 -15.85392 -15.18877 -15.02207 -14.81460 -14.61576 -14.12007 -14.07626 -13.90329 -13.89273 -13.73705 -13.59373 -13.42587 -13.18372 -13.09388 -12.89640 -12.72767 -12.61432 -12.49686 -12.24278 -12.11085 -12.01469 -11.91478 -11.47487 -11.06436 -10.80348 -10.11962 -9.90261 -9.36994 -8.28723 -6.45073 -0.71805 1.42748 1.45615 1.56452 1.66106 1.77329 2.19795 2.38411 2.98295 3.05925 3.08453 3.21717 3.48153 3.78272 4.06518 4.13175 4.17674 4.26399 4.33114 4.46586 4.50569 4.58005 4.76468 4.79295 4.90735 4.95100 5.06197 5.08985 5.13892 5.24834 5.27511 5.39277 5.47129 5.56803 5.78698 5.85507 6.10907 6.65971 7.16016 7.24919 7.68906 8.83601 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.026061 B = 0.003259 C = 0.003051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.130689 B = 8590.799068 C = 9175.632906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.617 5.617 3 C 0.692 3.308 4 O -0.642 6.642 5 N -0.726 5.726 6 C 0.287 3.713 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.985 3.015 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.257 1.257 15 C 0.134 3.866 16 H 0.103 0.897 17 C -0.130 4.130 18 C 0.116 3.884 19 N -1.016 6.016 20 S 2.624 3.376 21 C -0.646 4.646 22 O -0.995 6.995 23 O -0.989 6.989 24 C 0.115 3.885 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.400 0.600 29 H -0.014 1.014 30 H -0.012 1.012 31 H 0.269 0.731 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.148 0.852 37 H 0.142 0.858 38 H 0.152 0.848 39 H 0.119 0.881 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 -27.785 -0.626 28.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.354 5.354 3 C 0.394 3.606 4 O -0.524 6.524 5 N -0.381 5.381 6 C 0.164 3.836 7 C -0.595 4.595 8 H 0.097 0.903 9 C -0.194 4.194 10 N -0.567 5.567 11 Si 0.808 3.192 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.181 1.181 15 C 0.028 3.972 16 H 0.121 0.879 17 C -0.170 4.170 18 C -0.008 4.008 19 N -0.854 5.854 20 S 2.723 3.277 21 C -0.800 4.800 22 O -0.985 6.985 23 O -0.980 6.980 24 C -0.011 4.011 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.237 0.763 29 H 0.004 0.996 30 H 0.006 0.994 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.167 0.833 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.137 0.863 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.519 -27.184 -0.338 28.207 hybrid contribution -0.175 0.735 0.058 0.758 sum -7.695 -26.450 -0.280 27.548 Atomic orbital electron populations 1.22089 0.79053 1.04668 1.01912 1.46926 1.06715 1.03826 1.77906 1.16256 0.85046 0.81416 0.77913 1.90811 1.13659 1.87056 1.60904 1.45506 1.10184 1.04859 1.77501 1.18397 0.91742 0.79505 0.93986 1.21577 0.93714 0.91085 1.53102 0.90312 1.26038 0.97423 1.02137 0.93794 1.70137 1.15033 1.21729 1.49835 0.85151 0.78350 0.77070 0.78594 1.19637 1.20662 1.18124 1.22231 0.96980 0.81287 0.96674 0.87866 1.23053 0.98111 0.99463 0.96390 1.21904 0.97447 1.02322 0.79121 1.58562 1.36544 1.74827 1.15508 1.04280 0.72124 0.78933 0.72361 1.30327 1.14050 1.21777 1.13843 1.93579 1.86017 1.74523 1.44422 1.93569 1.54065 1.87125 1.63200 1.22412 0.87744 0.96081 0.94906 0.93204 0.91475 0.87904 0.76328 0.99649 0.99436 0.92168 0.91057 0.86538 0.91779 0.87758 0.83342 0.83977 0.82932 0.86290 0.91187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.76 9.07 127.77 1.16 2.91 16 2 N -0.62 -19.43 2.91 -832.81 -2.42 -21.86 16 3 C 0.69 30.25 8.28 179.06 1.48 31.74 16 4 O -0.64 -33.19 15.75 -3.99 -0.06 -33.25 16 5 N -0.73 -33.60 5.41 -482.31 -2.61 -36.21 16 6 C 0.29 16.47 5.43 85.63 0.46 16.94 16 7 C -0.56 -31.47 9.28 25.60 0.24 -31.24 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.01 0.33 5.46 84.65 0.46 0.79 16 10 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 11 Si 0.99 43.42 29.54 68.60 2.03 45.45 16 12 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 14 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 15 C 0.13 3.12 3.63 46.38 0.17 3.29 16 16 H 0.10 2.80 7.08 -2.39 -0.02 2.79 16 17 C -0.13 -2.04 6.56 31.78 0.21 -1.83 16 18 C 0.12 1.45 5.83 86.73 0.51 1.96 16 19 N -1.02 -14.33 2.41 -506.42 -1.22 -15.55 16 20 S 2.62 38.83 6.29 -56.49 -0.36 38.47 16 21 C -0.65 -2.47 10.99 113.37 1.25 -1.22 16 22 O -0.99 -23.57 17.28 -127.65 -2.21 -25.78 16 23 O -0.99 -21.23 17.60 -127.65 -2.25 -23.48 16 24 C 0.11 1.91 6.23 86.85 0.54 2.45 16 25 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.07 1.79 6.64 -2.39 -0.02 1.77 16 27 H 0.10 2.31 3.73 -2.39 -0.01 2.30 16 28 H 0.40 16.11 6.16 -92.70 -0.57 15.54 16 29 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H -0.01 -0.79 8.14 -2.39 -0.02 -0.80 16 31 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 0.98 6.59 -2.39 -0.02 0.96 16 35 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 38 H 0.15 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.07 1.51 7.67 -2.38 -0.02 1.49 16 Total: -1.00 -85.96 337.74 -1.85 -87.81 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.49 Total: 15.25 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 6.48 Total: 25.79 kcal Atomic # 7 Polarization: -124.30 SS G_CDS: -5.97 Total: -130.27 kcal Atomic # 8 Polarization: -77.98 SS G_CDS: -4.52 Total: -82.50 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: 38.83 SS G_CDS: -0.36 Total: 38.47 kcal Total: -85.96 -1.85 -87.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490388246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.875 kcal (2) G-P(sol) polarization free energy of solvation -85.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds