Wall clock time and date at job start Fri Apr 10 2020 17:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 119.99988 * 2 1 4 4 O 1.21588 * 120.00185 * 180.02562 * 3 2 1 5 5 N 1.34779 * 119.99954 * 359.97438 * 3 2 1 6 6 C 1.46500 * 119.99859 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.47126 * 180.02562 * 6 5 3 8 8 H 1.08002 * 119.99685 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00216 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00069 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99806 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46845 * 90.00621 * 11 9 7 13 13 H 1.48503 * 109.47399 * 210.00111 * 11 9 7 14 14 H 1.48498 * 109.47295 * 330.00717 * 11 9 7 15 15 C 1.46500 * 120.00172 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.88796 * 177.57232 * 15 2 1 17 17 C 1.55156 * 111.00038 * 301.45326 * 15 2 1 18 18 C 1.54324 * 102.94177 * 153.57820 * 17 15 2 19 19 N 1.47027 * 107.26925 * 337.80372 * 18 17 15 20 20 S 1.65597 * 125.64617 * 178.99065 * 19 18 17 21 21 C 1.81401 * 104.45073 * 89.97457 * 20 19 18 22 22 O 1.42101 * 104.27635 * 206.04423 * 20 19 18 23 23 O 1.42101 * 104.28178 * 333.90383 * 20 19 18 24 24 C 1.47420 * 108.70055 * 358.94211 * 19 18 17 25 25 H 1.08999 * 109.47612 * 90.00166 * 1 2 3 26 26 H 1.09007 * 109.47320 * 210.00102 * 1 2 3 27 27 H 1.08998 * 109.47587 * 330.00021 * 1 2 3 28 28 H 0.96999 * 120.00168 * 0.02562 * 5 3 2 29 29 H 1.08999 * 109.47567 * 60.00215 * 6 5 3 30 30 H 1.09001 * 109.47193 * 300.00140 * 6 5 3 31 31 H 0.97000 * 119.99667 * 179.97438 * 10 9 7 32 32 H 1.09007 * 110.72145 * 271.93502 * 17 15 2 33 33 H 1.09003 * 110.72298 * 35.21287 * 17 15 2 34 34 H 1.08999 * 109.88580 * 97.22494 * 18 17 15 35 35 H 1.09005 * 109.88039 * 218.38895 * 18 17 15 36 36 H 1.08997 * 109.47295 * 60.00281 * 21 20 19 37 37 H 1.09004 * 109.46855 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.46980 * 299.99893 * 21 20 19 39 39 H 1.09001 * 110.36424 * 265.28836 * 24 19 18 40 40 H 1.09004 * 110.36487 * 142.97061 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4649 2.3344 -0.0005 6 6 2.1974 3.6031 -0.0011 7 6 1.2181 4.7486 -0.0010 8 1 0.1563 4.5512 -0.0009 9 6 1.6777 6.0485 -0.0020 10 7 0.8231 7.0481 -0.0024 11 14 3.5143 6.3898 -0.0028 12 1 4.0004 6.4795 -1.4031 13 1 3.7797 7.6728 0.6964 14 1 4.2227 5.2886 0.6976 15 6 2.1975 -1.2687 -0.0006 16 1 3.2729 -1.0965 -0.0436 17 6 1.8210 -2.1287 1.2347 18 6 2.0896 -3.5685 0.7483 19 7 2.0419 -3.5488 -0.7210 20 16 2.2927 -4.8514 -1.7123 21 6 0.6447 -5.5771 -1.9319 22 8 2.7529 -4.2817 -2.9300 23 8 3.1213 -5.7179 -0.9495 24 6 1.7328 -2.1777 -1.1656 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 0.4949 2.3344 -0.0005 29 1 2.8241 3.6605 -0.8911 30 1 2.8241 3.6612 0.8889 31 1 1.1464 7.9626 -0.0027 32 1 2.4585 -1.8835 2.0842 33 1 0.7693 -1.9977 1.4899 34 1 3.0741 -3.8953 1.0830 35 1 1.3226 -4.2396 1.1352 36 1 -0.0186 -4.8414 -2.3867 37 1 0.7158 -6.4510 -2.5794 38 1 0.2465 -5.8746 -0.9618 39 1 0.6612 -2.0649 -1.3306 40 1 2.2845 -1.9404 -2.0753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490388251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:01 Heat of formation + Delta-G solvation = -79.119177 kcal Electronic energy + Delta-G solvation = -23468.530894 eV Core-core repulsion = 19832.476963 eV Total energy + Delta-G solvation = -3636.053931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10623 -38.33006 -37.43946 -36.26605 -34.89761 -34.36441 -32.35667 -30.61620 -29.85348 -29.09355 -27.64904 -26.62574 -23.02335 -22.33721 -21.03687 -19.38686 -19.25508 -18.35736 -18.04775 -16.95434 -16.49996 -16.19016 -16.04097 -15.26308 -15.19169 -14.40499 -14.20053 -14.05704 -13.78474 -13.56446 -13.50114 -13.42616 -13.20497 -13.06353 -12.49095 -12.45044 -12.37807 -12.20110 -12.13826 -12.06280 -11.80038 -11.58259 -11.40531 -11.00284 -10.85932 -10.76040 -9.96523 -9.60123 -9.46878 -9.36663 -8.78540 -8.59881 -8.03212 -6.21483 -4.23538 -0.15340 2.21377 2.96590 3.28400 3.35407 3.44037 3.52687 3.61808 3.74195 4.19921 4.33550 4.34686 4.38895 4.58505 4.66117 4.79322 4.94551 5.03153 5.09224 5.14386 5.20182 5.23025 5.40320 5.49216 5.59371 5.68215 5.72792 5.81276 5.95918 6.01431 6.55632 6.78255 7.10820 7.20614 7.34481 7.46043 8.23678 8.62242 8.77710 9.13245 9.39652 10.90423 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.033681 B = 0.002850 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.120394 B = 9822.750910 C = 9968.970004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.631 5.631 3 C 0.698 3.302 4 O -0.598 6.598 5 N -0.719 5.719 6 C 0.237 3.763 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.078 3.922 10 N -0.893 5.893 11 Si 0.877 3.123 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.154 3.846 16 H 0.119 0.881 17 C -0.143 4.143 18 C 0.124 3.876 19 N -1.012 6.012 20 S 2.629 3.371 21 C -0.674 4.674 22 O -0.949 6.949 23 O -0.953 6.953 24 C 0.104 3.896 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.393 0.607 29 H 0.019 0.981 30 H 0.024 0.976 31 H 0.268 0.732 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.071 0.929 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.751 -25.545 -0.088 25.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.369 5.369 3 C 0.399 3.601 4 O -0.477 6.477 5 N -0.373 5.373 6 C 0.114 3.886 7 C -0.580 4.580 8 H 0.096 0.904 9 C -0.126 4.126 10 N -0.531 5.531 11 Si 0.704 3.296 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.047 3.953 16 H 0.137 0.863 17 C -0.183 4.183 18 C -0.002 4.002 19 N -0.851 5.851 20 S 2.723 3.277 21 C -0.823 4.823 22 O -0.940 6.940 23 O -0.943 6.943 24 C -0.022 4.022 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.228 0.772 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.089 0.911 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.045 -25.620 -0.500 25.805 hybrid contribution -0.601 0.272 0.086 0.665 sum -3.646 -25.348 -0.413 25.612 Atomic orbital electron populations 1.21714 0.80241 1.03066 1.01738 1.46839 1.05963 1.04372 1.79738 1.16029 0.85423 0.80461 0.78169 1.90868 1.11747 1.86195 1.58897 1.45546 1.09946 1.04908 1.76876 1.19387 0.92918 0.79551 0.96731 1.21071 0.94320 0.89350 1.53291 0.90362 1.24777 0.98190 0.95775 0.93853 1.69879 1.34451 0.99212 1.49512 0.86810 0.85447 0.78294 0.79099 1.19830 1.20959 1.18411 1.21901 0.98909 0.81715 0.92742 0.86304 1.23061 1.03078 0.93181 0.98995 1.21692 1.02192 0.97810 0.78501 1.58527 1.87679 1.21809 1.17067 1.04395 0.76882 0.73121 0.73335 1.30584 1.26207 1.13935 1.11601 1.93628 1.78601 1.76330 1.45421 1.93609 1.63451 1.66415 1.70836 1.22395 1.00849 0.79902 0.99091 0.92698 0.91087 0.90808 0.77192 0.96269 0.95858 0.92262 0.89391 0.90043 0.90456 0.91526 0.85339 0.85460 0.85456 0.91111 0.89077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.73 8.87 59.84 0.53 1.26 16 2 N -0.63 -8.58 2.91 -177.21 -0.52 -9.09 16 3 C 0.70 13.40 8.28 -86.92 -0.72 12.68 16 4 O -0.60 -13.83 15.72 5.29 0.08 -13.75 16 5 N -0.72 -14.51 5.41 -66.41 -0.36 -14.87 16 6 C 0.24 5.81 4.50 -5.19 -0.02 5.79 16 7 C -0.54 -14.72 9.83 -34.44 -0.34 -15.06 16 8 H 0.08 2.20 7.84 -52.49 -0.41 1.79 16 9 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 10 N -0.89 -26.31 13.96 55.43 0.77 -25.54 16 11 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 15 C 0.15 1.82 3.46 -65.79 -0.23 1.59 16 16 H 0.12 1.73 7.01 -51.93 -0.36 1.36 16 17 C -0.14 -1.20 6.51 -24.90 -0.16 -1.37 16 18 C 0.12 0.91 6.90 -3.06 -0.02 0.89 16 19 N -1.01 -8.47 3.62 -111.42 -0.40 -8.88 16 20 S 2.63 21.91 6.29 -107.50 -0.68 21.23 16 21 C -0.67 -2.78 10.99 101.05 1.11 -1.67 16 22 O -0.95 -11.62 17.28 -57.54 -0.99 -12.61 16 23 O -0.95 -10.88 17.60 -57.54 -1.01 -11.89 16 24 C 0.10 1.00 6.64 -2.53 -0.02 0.99 16 25 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.07 0.48 6.32 -51.93 -0.33 0.15 16 27 H 0.07 0.74 6.36 -51.93 -0.33 0.41 16 28 H 0.39 6.91 6.05 -40.82 -0.25 6.67 16 29 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 30 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.08 0.57 6.31 -51.93 -0.33 0.24 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.13 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.13 0.39 8.14 -51.92 -0.42 -0.04 16 38 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.07 0.52 7.04 -51.93 -0.37 0.16 16 40 H 0.09 1.01 7.67 -51.93 -0.40 0.62 16 LS Contribution 337.08 15.07 5.08 5.08 Total: -1.00 -37.47 337.08 -8.32 -45.80 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.66 Total: 0.59 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: 0.04 Total: 7.19 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.50 Total: -58.37 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.92 Total: -38.25 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 21.91 SS G_CDS: -0.68 Total: 21.23 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -37.47 -8.32 -45.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490388251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.324 kcal (2) G-P(sol) polarization free energy of solvation -37.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds