Wall clock time and date at job start Fri Apr 10 2020 17:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 119.99988 * 2 1 4 4 O 1.21588 * 120.00185 * 180.02562 * 3 2 1 5 5 N 1.34779 * 119.99954 * 359.97438 * 3 2 1 6 6 C 1.46500 * 119.99859 * 180.02562 * 5 3 2 7 7 C 1.50703 * 109.47126 * 180.02562 * 6 5 3 8 8 H 1.08002 * 119.99685 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00216 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00069 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99806 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.46845 * 90.00621 * 11 9 7 13 13 H 1.48503 * 109.47399 * 210.00111 * 11 9 7 14 14 H 1.48498 * 109.47295 * 330.00717 * 11 9 7 15 15 C 1.46500 * 120.00172 * 180.02562 * 2 1 3 16 16 H 1.08997 * 110.88796 * 177.57232 * 15 2 1 17 17 C 1.55156 * 111.00038 * 301.45326 * 15 2 1 18 18 C 1.54324 * 102.94177 * 153.57820 * 17 15 2 19 19 N 1.47027 * 107.26925 * 337.80372 * 18 17 15 20 20 S 1.65597 * 125.64617 * 178.99065 * 19 18 17 21 21 C 1.81401 * 104.45073 * 89.97457 * 20 19 18 22 22 O 1.42101 * 104.27635 * 206.04423 * 20 19 18 23 23 O 1.42101 * 104.28178 * 333.90383 * 20 19 18 24 24 C 1.47420 * 108.70055 * 358.94211 * 19 18 17 25 25 H 1.08999 * 109.47612 * 90.00166 * 1 2 3 26 26 H 1.09007 * 109.47320 * 210.00102 * 1 2 3 27 27 H 1.08998 * 109.47587 * 330.00021 * 1 2 3 28 28 H 0.96999 * 120.00168 * 0.02562 * 5 3 2 29 29 H 1.08999 * 109.47567 * 60.00215 * 6 5 3 30 30 H 1.09001 * 109.47193 * 300.00140 * 6 5 3 31 31 H 0.97000 * 119.99667 * 179.97438 * 10 9 7 32 32 H 1.09007 * 110.72145 * 271.93502 * 17 15 2 33 33 H 1.09003 * 110.72298 * 35.21287 * 17 15 2 34 34 H 1.08999 * 109.88580 * 97.22494 * 18 17 15 35 35 H 1.09005 * 109.88039 * 218.38895 * 18 17 15 36 36 H 1.08997 * 109.47295 * 60.00281 * 21 20 19 37 37 H 1.09004 * 109.46855 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.46980 * 299.99893 * 21 20 19 39 39 H 1.09001 * 110.36424 * 265.28836 * 24 19 18 40 40 H 1.09004 * 110.36487 * 142.97061 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1672 -0.0005 5 7 1.4649 2.3344 -0.0005 6 6 2.1974 3.6031 -0.0011 7 6 1.2181 4.7486 -0.0010 8 1 0.1563 4.5512 -0.0009 9 6 1.6777 6.0485 -0.0020 10 7 0.8231 7.0481 -0.0024 11 14 3.5143 6.3898 -0.0028 12 1 4.0004 6.4795 -1.4031 13 1 3.7797 7.6728 0.6964 14 1 4.2227 5.2886 0.6976 15 6 2.1975 -1.2687 -0.0006 16 1 3.2729 -1.0965 -0.0436 17 6 1.8210 -2.1287 1.2347 18 6 2.0896 -3.5685 0.7483 19 7 2.0419 -3.5488 -0.7210 20 16 2.2927 -4.8514 -1.7123 21 6 0.6447 -5.5771 -1.9319 22 8 2.7529 -4.2817 -2.9300 23 8 3.1213 -5.7179 -0.9495 24 6 1.7328 -2.1777 -1.1656 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3634 -0.8900 0.5139 27 1 -0.3634 0.8899 0.5138 28 1 0.4949 2.3344 -0.0005 29 1 2.8241 3.6605 -0.8911 30 1 2.8241 3.6612 0.8889 31 1 1.1464 7.9626 -0.0027 32 1 2.4585 -1.8835 2.0842 33 1 0.7693 -1.9977 1.4899 34 1 3.0741 -3.8953 1.0830 35 1 1.3226 -4.2396 1.1352 36 1 -0.0186 -4.8414 -2.3867 37 1 0.7158 -6.4510 -2.5794 38 1 0.2465 -5.8746 -0.9618 39 1 0.6612 -2.0649 -1.3306 40 1 2.2845 -1.9404 -2.0753 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490388251.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:01 Heat of formation + Delta-G solvation = -110.663373 kcal Electronic energy + Delta-G solvation = -23469.898753 eV Core-core repulsion = 19832.476963 eV Total energy + Delta-G solvation = -3637.421790 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.35425 -39.36358 -38.20544 -37.03296 -36.18750 -36.04788 -34.34997 -31.45555 -30.24387 -30.16988 -29.16427 -27.65470 -24.45664 -23.39633 -22.30411 -20.75680 -19.96407 -19.66642 -18.75375 -18.47234 -17.67426 -17.20577 -16.94394 -16.65030 -16.53520 -15.85166 -15.31576 -14.95794 -14.76820 -14.61930 -14.42927 -14.37361 -14.01908 -13.93848 -13.90087 -13.74316 -13.25984 -13.17581 -13.12979 -13.06408 -12.85747 -12.70636 -12.49927 -12.38846 -11.97376 -11.92173 -11.65139 -11.60164 -11.20561 -10.90527 -10.13218 -9.96386 -9.41795 -8.38777 -6.44992 -0.75044 1.33954 1.36250 1.49031 1.50147 1.84605 2.16194 2.29728 2.97026 2.97105 3.04868 3.19498 3.51830 3.73927 4.01421 4.09119 4.18363 4.23567 4.33162 4.36211 4.56991 4.66657 4.74524 4.79141 4.89243 4.93391 4.94564 5.06150 5.08222 5.10322 5.21264 5.26461 5.32827 5.55496 5.63393 5.94748 6.20717 6.56367 7.10529 7.21250 7.64148 8.75774 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.033681 B = 0.002850 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.120394 B = 9822.750910 C = 9968.970004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.618 5.618 3 C 0.694 3.306 4 O -0.645 6.645 5 N -0.719 5.719 6 C 0.250 3.750 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.029 3.971 10 N -0.930 5.930 11 Si 0.935 3.065 12 H -0.267 1.267 13 H -0.273 1.273 14 H -0.262 1.262 15 C 0.140 3.860 16 H 0.078 0.922 17 C -0.131 4.131 18 C 0.121 3.879 19 N -1.015 6.015 20 S 2.627 3.373 21 C -0.641 4.641 22 O -1.000 7.000 23 O -0.992 6.992 24 C 0.112 3.888 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.069 0.931 28 H 0.406 0.594 29 H 0.007 0.993 30 H 0.009 0.991 31 H 0.272 0.728 32 H 0.079 0.921 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.107 0.893 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.106 0.894 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -27.831 0.259 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.354 5.354 3 C 0.395 3.605 4 O -0.528 6.528 5 N -0.374 5.374 6 C 0.126 3.874 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.171 4.171 10 N -0.569 5.569 11 Si 0.759 3.241 12 H -0.192 1.192 13 H -0.198 1.198 14 H -0.186 1.186 15 C 0.034 3.966 16 H 0.096 0.904 17 C -0.171 4.171 18 C -0.004 4.004 19 N -0.853 5.853 20 S 2.727 3.273 21 C -0.796 4.796 22 O -0.991 6.991 23 O -0.983 6.983 24 C -0.015 4.015 25 H 0.090 0.910 26 H 0.130 0.870 27 H 0.087 0.913 28 H 0.243 0.757 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.127 0.873 34 H 0.081 0.919 35 H 0.125 0.875 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.173 0.827 39 H 0.124 0.876 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.216 -27.943 -0.141 28.426 hybrid contribution -0.040 0.864 -0.032 0.865 sum -5.255 -27.079 -0.173 27.585 Atomic orbital electron populations 1.22072 0.77157 1.04880 1.03449 1.46805 1.07728 1.02991 1.77916 1.16200 0.84945 0.81514 0.77875 1.90832 1.14025 1.87094 1.60845 1.45229 1.10409 1.04114 1.77620 1.18947 0.92257 0.80828 0.95374 1.21246 0.94050 0.90282 1.52472 0.92031 1.25530 1.02203 0.95765 0.93651 1.69969 1.36349 0.99787 1.50776 0.85899 0.80524 0.78320 0.79385 1.19165 1.19765 1.18635 1.22027 0.96884 0.81603 0.96110 0.90354 1.23023 1.04450 0.92755 0.96887 1.21828 1.02993 0.97720 0.77844 1.58375 1.88233 1.21212 1.17478 1.04197 0.78666 0.72571 0.71915 1.30296 1.20914 1.14459 1.13909 1.93565 1.80996 1.77330 1.47222 1.93556 1.66497 1.66932 1.71332 1.22268 1.02327 0.80007 0.96910 0.91021 0.87030 0.91281 0.75681 0.97557 0.97298 0.91842 0.90183 0.87274 0.91863 0.87499 0.83304 0.83692 0.82714 0.87631 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.05 8.87 127.77 1.13 2.18 16 2 N -0.62 -16.10 2.91 -832.83 -2.42 -18.52 16 3 C 0.69 26.89 8.28 179.05 1.48 28.38 16 4 O -0.65 -30.98 15.72 -3.99 -0.06 -31.05 16 5 N -0.72 -29.12 5.41 -482.29 -2.61 -31.73 16 6 C 0.25 12.47 4.50 85.63 0.38 12.86 16 7 C -0.54 -29.80 9.83 25.60 0.25 -29.55 16 8 H 0.06 3.51 7.84 -2.91 -0.02 3.49 16 9 C 0.03 1.63 5.47 84.65 0.46 2.10 16 10 N -0.93 -55.16 13.96 21.45 0.30 -54.86 16 11 Si 0.93 44.42 27.47 68.60 1.88 46.31 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.26 -12.46 6.54 99.48 0.65 -11.81 16 15 C 0.14 3.22 3.46 46.38 0.16 3.38 16 16 H 0.08 2.44 7.01 -2.39 -0.02 2.42 16 17 C -0.13 -1.90 6.51 31.78 0.21 -1.69 16 18 C 0.12 1.48 6.90 86.73 0.60 2.08 16 19 N -1.01 -15.10 3.62 -506.42 -1.83 -16.94 16 20 S 2.63 40.17 6.29 -56.49 -0.36 39.81 16 21 C -0.64 -2.21 10.99 113.37 1.25 -0.97 16 22 O -1.00 -24.75 17.28 -127.65 -2.21 -26.96 16 23 O -0.99 -22.16 17.60 -127.65 -2.25 -24.40 16 24 C 0.11 1.98 6.64 86.85 0.58 2.55 16 25 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 26 H 0.11 0.91 6.32 -2.38 -0.02 0.89 16 27 H 0.07 1.21 6.36 -2.39 -0.02 1.19 16 28 H 0.41 14.09 6.05 -92.71 -0.56 13.53 16 29 H 0.01 0.34 7.57 -2.39 -0.02 0.32 16 30 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 31 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 32 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 33 H 0.11 0.99 6.31 -2.39 -0.02 0.98 16 34 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.11 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.15 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.14 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.15 -0.14 8.14 -2.39 -0.02 -0.16 16 39 H 0.11 1.14 7.04 -2.39 -0.02 1.12 16 40 H 0.07 1.50 7.67 -2.38 -0.02 1.48 16 Total: -1.00 -85.63 337.08 -2.61 -88.24 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 0.44 Total: 8.78 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 6.50 Total: 21.31 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -6.57 Total: -122.05 kcal Atomic # 8 Polarization: -77.89 SS G_CDS: -4.52 Total: -82.40 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: 40.17 SS G_CDS: -0.36 Total: 39.81 kcal Total: -85.63 -2.61 -88.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490388251.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.421 kcal (2) G-P(sol) polarization free energy of solvation -85.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds