Wall clock time and date at job start Fri Apr 10 2020 17:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99729 * 2 1 4 4 C 1.50701 * 109.47217 * 269.99384 * 3 2 1 5 5 H 1.08004 * 119.99925 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00153 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99784 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99720 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47540 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47012 * 119.99694 * 8 6 4 11 11 H 1.48507 * 109.46973 * 239.99470 * 8 6 4 12 12 C 1.34771 * 120.00388 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00505 * 184.87405 * 12 2 1 14 14 C 1.50712 * 119.99817 * 4.87337 * 12 2 1 15 15 H 1.08994 * 109.52093 * 309.63289 * 14 12 2 16 16 C 1.53036 * 109.49540 * 69.71326 * 14 12 2 17 17 C 1.53043 * 109.52712 * 181.32693 * 16 14 12 18 18 C 1.53195 * 109.30530 * 298.61160 * 17 16 14 19 19 N 1.46919 * 108.76779 * 54.65834 * 18 17 16 20 20 S 1.65605 * 120.63300 * 126.40007 * 19 18 17 21 21 N 1.65592 * 107.21878 * 269.97764 * 20 19 18 22 22 O 1.42098 * 106.39934 * 23.52139 * 20 19 18 23 23 O 1.42100 * 106.39940 * 156.43567 * 20 19 18 24 24 C 1.46928 * 118.73675 * 306.38187 * 19 18 17 25 25 H 1.08996 * 109.47666 * 263.32567 * 1 2 3 26 26 H 1.09001 * 109.46821 * 23.33375 * 1 2 3 27 27 H 1.09004 * 109.46409 * 143.32615 * 1 2 3 28 28 H 1.09004 * 109.47376 * 29.99648 * 3 2 1 29 29 H 1.09005 * 109.47352 * 149.99486 * 3 2 1 30 30 H 0.97001 * 119.99595 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.46150 * 301.33695 * 16 14 12 32 32 H 1.08997 * 109.46185 * 61.30653 * 16 14 12 33 33 H 1.08993 * 109.49801 * 58.57242 * 17 16 14 34 34 H 1.09002 * 109.49753 * 178.68024 * 17 16 14 35 35 H 1.09004 * 109.60127 * 294.86322 * 18 17 16 36 36 H 1.08999 * 109.69850 * 174.50758 * 18 17 16 37 37 H 0.97007 * 120.00052 * 149.99576 * 21 20 19 38 38 H 0.97002 * 120.00227 * 330.00141 * 21 20 19 39 39 H 1.09005 * 109.58804 * 293.81701 * 24 19 18 40 40 H 1.09003 * 109.69887 * 173.46828 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0976 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6731 8 14 3.4378 3.4169 -3.4339 9 1 2.8600 2.4168 -4.3674 10 1 2.8006 4.7379 -3.6668 11 1 4.9003 3.5246 -3.6679 12 6 2.1390 -1.1671 0.0005 13 8 3.3485 -1.1690 0.0898 14 6 1.3895 -2.4700 -0.1098 15 1 0.5838 -2.4899 0.6239 16 6 0.8027 -2.6042 -1.5168 17 6 0.0137 -3.9115 -1.6195 18 6 0.9575 -5.0932 -1.3748 19 7 1.6356 -4.8976 -0.0863 20 16 1.5974 -6.0776 1.0750 21 7 0.2660 -5.7943 2.0181 22 8 1.3547 -7.3017 0.3954 23 8 2.7304 -5.8607 1.9048 24 6 2.3487 -3.6353 0.1523 25 1 -0.3634 -0.1194 1.0206 26 1 -0.3633 0.9436 -0.4071 27 1 -0.3632 -0.8243 -0.6138 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 4.0309 4.4435 -0.8504 31 1 0.1387 -1.7628 -1.7151 32 1 1.6107 -2.6092 -2.2483 33 1 -0.7789 -3.9178 -0.8714 34 1 -0.4235 -3.9953 -2.6144 35 1 1.6975 -5.1416 -2.1737 36 1 0.3858 -6.0209 -1.3498 37 1 -0.1915 -6.5348 2.4463 38 1 -0.0565 -4.8879 2.1422 39 1 3.2023 -3.5647 -0.5219 40 1 2.6950 -3.5984 1.1852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596909666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:20 Heat of formation + Delta-G solvation = -111.938938 kcal Electronic energy + Delta-G solvation = -24270.477265 eV Core-core repulsion = 20633.000162 eV Total energy + Delta-G solvation = -3637.477103 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88383 -37.69377 -37.34992 -35.97748 -34.95227 -33.37657 -33.04290 -32.31584 -31.32155 -27.86642 -26.04246 -24.72440 -24.30552 -22.42097 -20.96754 -19.42426 -18.68489 -18.19836 -17.63918 -16.76934 -16.54730 -16.37857 -15.85839 -15.38636 -14.90621 -14.70370 -14.51741 -14.16062 -13.85941 -13.51426 -13.28819 -12.68167 -12.47275 -12.34867 -12.22271 -12.20639 -12.05356 -12.04760 -11.88107 -11.52785 -11.22823 -11.13581 -11.06981 -10.80368 -10.77854 -10.61309 -10.48117 -10.18873 -9.65264 -9.35577 -8.86422 -8.47715 -7.69435 -6.08337 -4.13526 0.41148 2.68997 3.26568 3.28348 3.35087 3.38623 3.39152 3.86562 4.33423 4.41167 4.43188 4.70696 4.74417 4.94676 4.97161 5.13582 5.25169 5.28665 5.37158 5.49289 5.58760 5.68923 5.71809 5.76133 5.83069 5.92351 5.99065 6.07481 6.16400 6.30831 6.33187 6.81979 7.00157 7.40988 7.48601 7.87864 8.18675 8.34852 8.84770 9.01755 9.51917 10.99752 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027631 B = 0.003605 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.108215 B = 7765.540384 C = 7943.631890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.599 5.599 3 C 0.243 3.757 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 C 0.511 3.489 13 O -0.539 6.539 14 C -0.122 4.122 15 H 0.090 0.910 16 C -0.115 4.115 17 C -0.131 4.131 18 C 0.119 3.881 19 N -1.002 6.002 20 S 2.794 3.206 21 N -1.262 6.262 22 O -0.985 6.985 23 O -0.977 6.977 24 C 0.137 3.863 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.263 0.737 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.417 0.583 38 H 0.415 0.585 39 H 0.090 0.910 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.680 -16.854 1.883 21.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.331 5.331 3 C 0.124 3.876 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 C 0.296 3.704 13 O -0.417 6.417 14 C -0.145 4.145 15 H 0.108 0.892 16 C -0.153 4.153 17 C -0.170 4.170 18 C -0.006 4.006 19 N -0.843 5.843 20 S 2.799 3.201 21 N -0.935 5.935 22 O -0.968 6.968 23 O -0.959 6.959 24 C 0.012 3.988 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.246 0.754 38 H 0.241 0.759 39 H 0.108 0.892 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.117 -17.439 1.977 20.775 hybrid contribution -0.594 0.982 -0.758 1.375 sum -11.710 -16.457 1.219 20.235 Atomic orbital electron populations 1.21866 0.81626 1.03280 1.00220 1.48109 1.06094 1.07765 1.71123 1.19329 0.92710 0.78004 0.97546 1.21456 1.36557 1.06347 0.92236 0.92411 1.24943 0.95338 0.96409 0.97423 1.69943 1.38298 1.14320 1.30684 0.86446 0.78127 0.78308 0.84533 1.19825 1.20972 1.20858 1.20070 0.87853 0.84796 0.77644 1.90689 1.14018 1.87116 1.49877 1.21678 0.99139 0.94067 0.99651 0.89197 1.21613 1.00521 0.97848 0.95302 1.21937 0.97928 0.94610 1.02574 1.21492 0.95652 0.98663 0.84764 1.57881 1.66128 1.32238 1.28040 1.01646 0.73333 0.72304 0.72778 1.53646 1.52654 1.17710 1.69509 1.93609 1.85886 1.43294 1.74037 1.93661 1.49478 1.85260 1.67501 1.21303 0.93823 0.79856 1.03833 0.93902 0.90606 0.91747 0.95033 0.93676 0.92727 0.89979 0.90741 0.91389 0.90231 0.90572 0.89151 0.75402 0.75867 0.89201 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 9.84 59.85 0.59 1.64 16 2 N -0.60 -11.89 2.86 -182.95 -0.52 -12.41 16 3 C 0.24 6.17 5.17 -5.20 -0.03 6.14 16 4 C -0.53 -14.49 9.39 -34.44 -0.32 -14.82 16 5 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -26.17 13.29 55.43 0.74 -25.44 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.51 9.84 6.94 -10.98 -0.08 9.76 16 13 O -0.54 -12.90 15.43 5.56 0.09 -12.81 16 14 C -0.12 -1.59 1.86 -91.65 -0.17 -1.76 16 15 H 0.09 0.92 7.68 -51.93 -0.40 0.52 16 16 C -0.12 -1.29 4.85 -26.69 -0.13 -1.42 16 17 C -0.13 -1.02 6.08 -26.61 -0.16 -1.18 16 18 C 0.12 1.03 6.38 -3.71 -0.02 1.01 16 19 N -1.00 -10.33 3.35 -113.52 -0.38 -10.71 16 20 S 2.79 29.82 6.70 -107.50 -0.72 29.10 16 21 N -1.26 -8.23 9.58 60.35 0.58 -7.66 16 22 O -0.98 -12.76 16.85 -57.17 -0.96 -13.73 16 23 O -0.98 -14.44 16.86 -57.17 -0.96 -15.40 16 24 C 0.14 1.79 5.10 -3.71 -0.02 1.77 16 25 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.08 1.14 8.02 -51.93 -0.42 0.72 16 27 H 0.06 0.73 4.38 -51.93 -0.23 0.50 16 28 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 29 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 30 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 31 H 0.08 0.92 5.45 -51.93 -0.28 0.63 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.68 7.12 -51.93 -0.37 0.32 16 37 H 0.42 2.00 8.96 -34.47 -0.31 1.69 16 38 H 0.41 2.00 8.96 -34.47 -0.31 1.69 16 39 H 0.09 1.32 7.82 -51.93 -0.41 0.92 16 40 H 0.10 1.32 7.13 -51.93 -0.37 0.94 16 LS Contribution 334.63 15.07 5.04 5.04 Total: -1.00 -37.02 334.63 -8.12 -45.13 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -5.55 Total: -0.28 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -0.44 Total: 2.77 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: 0.41 Total: -56.22 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.84 Total: -41.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 29.82 SS G_CDS: -0.72 Total: 29.10 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -37.02 -8.12 -45.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596909666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.805 kcal (2) G-P(sol) polarization free energy of solvation -37.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds