Wall clock time and date at job start Fri Apr 10 2020 17:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46497 * 119.99729 * 2 1 4 4 C 1.50701 * 109.47217 * 269.99384 * 3 2 1 5 5 H 1.08004 * 119.99925 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00153 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99784 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 119.99720 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47540 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47012 * 119.99694 * 8 6 4 11 11 H 1.48507 * 109.46973 * 239.99470 * 8 6 4 12 12 C 1.34771 * 120.00388 * 179.97438 * 2 1 3 13 13 O 1.21282 * 120.00505 * 184.87405 * 12 2 1 14 14 C 1.50712 * 119.99817 * 4.87337 * 12 2 1 15 15 H 1.08994 * 109.52093 * 309.63289 * 14 12 2 16 16 C 1.53036 * 109.49540 * 69.71326 * 14 12 2 17 17 C 1.53043 * 109.52712 * 181.32693 * 16 14 12 18 18 C 1.53195 * 109.30530 * 298.61160 * 17 16 14 19 19 N 1.46919 * 108.76779 * 54.65834 * 18 17 16 20 20 S 1.65605 * 120.63300 * 126.40007 * 19 18 17 21 21 N 1.65592 * 107.21878 * 269.97764 * 20 19 18 22 22 O 1.42098 * 106.39934 * 23.52139 * 20 19 18 23 23 O 1.42100 * 106.39940 * 156.43567 * 20 19 18 24 24 C 1.46928 * 118.73675 * 306.38187 * 19 18 17 25 25 H 1.08996 * 109.47666 * 263.32567 * 1 2 3 26 26 H 1.09001 * 109.46821 * 23.33375 * 1 2 3 27 27 H 1.09004 * 109.46409 * 143.32615 * 1 2 3 28 28 H 1.09004 * 109.47376 * 29.99648 * 3 2 1 29 29 H 1.09005 * 109.47352 * 149.99486 * 3 2 1 30 30 H 0.97001 * 119.99595 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.46150 * 301.33695 * 16 14 12 32 32 H 1.08997 * 109.46185 * 61.30653 * 16 14 12 33 33 H 1.08993 * 109.49801 * 58.57242 * 17 16 14 34 34 H 1.09002 * 109.49753 * 178.68024 * 17 16 14 35 35 H 1.09004 * 109.60127 * 294.86322 * 18 17 16 36 36 H 1.08999 * 109.69850 * 174.50758 * 18 17 16 37 37 H 0.97007 * 120.00052 * 149.99576 * 21 20 19 38 38 H 0.97002 * 120.00227 * 330.00141 * 21 20 19 39 39 H 1.09005 * 109.58804 * 293.81701 * 24 19 18 40 40 H 1.09003 * 109.69887 * 173.46828 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0976 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6731 8 14 3.4378 3.4169 -3.4339 9 1 2.8600 2.4168 -4.3674 10 1 2.8006 4.7379 -3.6668 11 1 4.9003 3.5246 -3.6679 12 6 2.1390 -1.1671 0.0005 13 8 3.3485 -1.1690 0.0898 14 6 1.3895 -2.4700 -0.1098 15 1 0.5838 -2.4899 0.6239 16 6 0.8027 -2.6042 -1.5168 17 6 0.0137 -3.9115 -1.6195 18 6 0.9575 -5.0932 -1.3748 19 7 1.6356 -4.8976 -0.0863 20 16 1.5974 -6.0776 1.0750 21 7 0.2660 -5.7943 2.0181 22 8 1.3547 -7.3017 0.3954 23 8 2.7304 -5.8607 1.9048 24 6 2.3487 -3.6353 0.1523 25 1 -0.3634 -0.1194 1.0206 26 1 -0.3633 0.9436 -0.4071 27 1 -0.3632 -0.8243 -0.6138 28 1 1.6083 2.0284 0.5138 29 1 3.1499 1.1385 0.5139 30 1 4.0309 4.4435 -0.8504 31 1 0.1387 -1.7628 -1.7151 32 1 1.6107 -2.6092 -2.2483 33 1 -0.7789 -3.9178 -0.8714 34 1 -0.4235 -3.9953 -2.6144 35 1 1.6975 -5.1416 -2.1737 36 1 0.3858 -6.0209 -1.3498 37 1 -0.1915 -6.5348 2.4463 38 1 -0.0565 -4.8879 2.1422 39 1 3.2023 -3.5647 -0.5219 40 1 2.6950 -3.5984 1.1852 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596909666.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:20 Heat of formation + Delta-G solvation = -143.429544 kcal Electronic energy + Delta-G solvation = -24271.842800 eV Core-core repulsion = 20633.000162 eV Total energy + Delta-G solvation = -3638.842638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.124 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20311 -38.82149 -38.33401 -36.96298 -36.62672 -34.81731 -34.00028 -33.55382 -32.27141 -29.71371 -27.41547 -25.82899 -25.60982 -23.89305 -21.90857 -20.27951 -19.96145 -19.17116 -18.65412 -18.43383 -17.85920 -17.40083 -17.11012 -16.67565 -16.22710 -16.13588 -15.61545 -15.39308 -14.84891 -14.64270 -14.52508 -14.01456 -13.77317 -13.64646 -13.48059 -13.28003 -13.23448 -13.18954 -13.06209 -12.95094 -12.79828 -12.57122 -12.41335 -12.20718 -11.95463 -11.83789 -11.61325 -11.49462 -11.25863 -10.64373 -10.53273 -10.10101 -9.37504 -8.21545 -6.36400 -0.44810 1.37069 1.39755 1.50965 1.82012 1.85413 2.34264 2.48648 2.61134 3.08430 3.38611 3.52692 3.72962 3.84206 4.01284 4.10270 4.26648 4.35653 4.42748 4.55609 4.74183 4.79403 4.86405 4.92501 4.96645 5.04391 5.06736 5.14316 5.25621 5.27676 5.33853 5.46054 5.52510 5.58181 5.86254 6.07145 6.39649 6.71586 6.81287 7.29480 7.49293 8.85633 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.027631 B = 0.003605 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.108215 B = 7765.540384 C = 7943.631890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.606 5.606 3 C 0.256 3.744 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.264 1.264 10 H -0.270 1.270 11 H -0.285 1.285 12 C 0.500 3.500 13 O -0.600 6.600 14 C -0.107 4.107 15 H 0.132 0.868 16 C -0.114 4.114 17 C -0.120 4.120 18 C 0.110 3.890 19 N -0.995 5.995 20 S 2.816 3.184 21 N -1.242 6.242 22 O -1.006 7.006 23 O -1.022 7.022 24 C 0.143 3.857 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.102 0.898 28 H 0.023 0.977 29 H -0.004 1.004 30 H 0.266 0.734 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.429 0.571 38 H 0.427 0.573 39 H 0.062 0.938 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.879 -18.111 0.804 24.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.336 5.336 3 C 0.135 3.865 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.193 4.193 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.188 1.188 10 H -0.195 1.195 11 H -0.211 1.211 12 C 0.288 3.712 13 O -0.481 6.481 14 C -0.129 4.129 15 H 0.150 0.850 16 C -0.152 4.152 17 C -0.158 4.158 18 C -0.015 4.015 19 N -0.836 5.836 20 S 2.821 3.179 21 N -0.921 5.921 22 O -0.989 6.989 23 O -1.005 7.005 24 C 0.017 3.983 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.120 0.880 28 H 0.041 0.959 29 H 0.014 0.986 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.069 0.931 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.127 0.873 37 H 0.261 0.739 38 H 0.256 0.744 39 H 0.081 0.919 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.390 -18.723 0.897 23.631 hybrid contribution 0.388 1.352 -0.373 1.456 sum -14.001 -17.370 0.524 22.317 Atomic orbital electron populations 1.22203 0.77825 1.04444 1.02956 1.48113 1.08424 1.06124 1.70983 1.18776 0.91183 0.80525 0.96039 1.21747 1.36544 1.06454 0.93039 0.92482 1.25869 0.95002 0.96550 1.01847 1.70066 1.39054 1.14844 1.33019 0.85373 0.77726 0.78463 0.79268 1.18780 1.19527 1.21107 1.21217 0.87561 0.86499 0.75886 1.90656 1.17018 1.88134 1.52334 1.21658 0.99213 0.89691 1.02370 0.84995 1.21643 1.00225 1.00358 0.92954 1.21926 0.97562 0.91415 1.04939 1.21757 0.95934 1.00170 0.83593 1.57689 1.66244 1.30701 1.28970 1.00750 0.73164 0.71557 0.72443 1.53161 1.51353 1.18984 1.68610 1.93579 1.86217 1.44481 1.74627 1.93615 1.52325 1.85764 1.68757 1.21021 0.93494 0.81243 1.02591 0.90863 0.91506 0.88022 0.95926 0.98594 0.92492 0.89378 0.93121 0.88521 0.87973 0.91077 0.87283 0.73949 0.74365 0.91929 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.75 9.84 127.77 1.26 3.00 16 2 N -0.61 -24.08 2.86 -851.11 -2.43 -26.52 16 3 C 0.26 13.55 5.17 85.63 0.44 13.99 16 4 C -0.54 -30.32 9.39 25.60 0.24 -30.08 16 5 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.35 5.46 84.66 0.46 0.81 16 7 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 8 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 9 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 12 C 0.50 19.50 6.94 87.66 0.61 20.10 16 13 O -0.60 -30.36 15.43 -3.03 -0.05 -30.40 16 14 C -0.11 -2.58 1.86 -11.46 -0.02 -2.60 16 15 H 0.13 2.11 7.68 -2.39 -0.02 2.09 16 16 C -0.11 -2.23 4.85 30.62 0.15 -2.08 16 17 C -0.12 -1.31 6.08 30.67 0.19 -1.13 16 18 C 0.11 1.57 6.38 86.36 0.55 2.12 16 19 N -1.00 -18.73 3.35 -513.08 -1.72 -20.44 16 20 S 2.82 55.53 6.70 -56.49 -0.38 55.15 16 21 N -1.24 -12.31 9.58 37.02 0.35 -11.95 16 22 O -1.01 -24.18 16.85 -128.00 -2.16 -26.34 16 23 O -1.02 -30.06 16.86 -128.00 -2.16 -32.21 16 24 C 0.14 3.70 5.10 86.36 0.44 4.14 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.07 1.88 8.02 -2.39 -0.02 1.86 16 27 H 0.10 1.87 4.38 -2.38 -0.01 1.86 16 28 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 29 H 0.00 -0.25 7.36 -2.38 -0.02 -0.27 16 30 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 31 H 0.09 1.63 5.45 -2.39 -0.01 1.62 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.11 1.23 7.12 -2.39 -0.02 1.22 16 37 H 0.43 2.71 8.96 -96.74 -0.87 1.84 16 38 H 0.43 2.43 8.96 -96.75 -0.87 1.56 16 39 H 0.06 1.95 7.82 -2.38 -0.02 1.93 16 40 H 0.09 2.40 7.13 -2.39 -0.02 2.38 16 Total: -1.00 -85.75 334.63 -2.56 -88.31 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -0.65 Total: 5.58 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 4.32 Total: 8.27 kcal Atomic # 7 Polarization: -111.09 SS G_CDS: -3.51 Total: -114.60 kcal Atomic # 8 Polarization: -84.59 SS G_CDS: -4.36 Total: -88.95 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 55.53 SS G_CDS: -0.38 Total: 55.15 kcal Total: -85.75 -2.56 -88.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596909666.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.115 kcal (2) G-P(sol) polarization free energy of solvation -85.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds